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Oliver Stegle
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2020 – today
- 2024
- [c17]Martin Rohbeck, Brian Clarke, Katharina Mikulik, Alexandra Pettet, Oliver Stegle, Kai Ueltzhöffer:
Bicycle: Intervention-Based Causal Discovery with Cycles. CLeaR 2024: 209-242 - [e1]Andreas K. Maier
, Julia A. Schnabel
, Pallavi Tiwari
, Oliver Stegle
:
Machine Learning for Multimodal Healthcare Data - First International Workshop, ML4MHD 2023, Honolulu, Hawaii, USA, July 29, 2023, Proceedings. Lecture Notes in Computer Science 14315, Springer 2024, ISBN 978-3-031-47678-5 [contents] - 2023
- [j14]Florin C. Walter
, Oliver Stegle
, Britta Velten:
FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution. Bioinform. 39(5) (2023) - 2020
- [j13]Claudia Calabrese
, Natalie R. Davidson
, Deniz Demircioglu
, Nuno A. Fonseca
, Yao He, André Kahles, Kjong-Van Lehmann
, Fenglin Liu
, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban
, Liliana Greger, Siliang Li, Dongbing Liu
, Marc D. Perry
, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey
, Serap Erkek
, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen
, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström
, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak
, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson
, B. F. Francis Ouellette
, Kui Wu
, Huanming Yang
, Samirkumar B. Amin
, Aurélien Chateigner, Isidro Cortés-Ciriano
, Brian Craft, Milana Frenkel-Morgenstern
, Mary Goldman, Ekta Khurana, Fabien C. Lamaze
, Chang Li, Xiaobo Li
, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen
, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen
, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke
, Roland F. Schwarz
, Oliver Stegle
, Zemin Zhang, Alvis Brazma
, Gunnar Rätsch, Angela N. Brooks:
Genomic basis for RNA alterations in cancer. Nat. 578(7793): 129-136 (2020)
2010 – 2019
- 2019
- [i3]David Laehnemann
, Johannes Köster
, Ewa Szczurek, Davis J. McCarthy
, Stephanie C. Hicks
, Mark D. Robinson
, Catalina A. Vallejos
, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz
, Luca Pinello, Pavel Skums, Alexandros Stamatakis
, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens
, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh
, Maria Florescu
, Victor Guryev, Rens Holmer
, Katharina Jahn, Thamar Jessurun Lobo
, Emma M. Keizer, Indu Khatri
, Szymon M. Kielbasa
, Jan O. Korbel, Alexey M. Kozlov
, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu
, John C. Marioni
, Tobias Marschall
, Felix Mölder
, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder
, Antoine-Emmanuel Saliba
, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [j12]Irene Papatheodorou
, Nuno A. Fonseca
, Maria Keays
, Y. Amy Tang
, Elisabet Barrera
, Wojciech Bazant, Melissa L. Burke
, Anja Füllgrabe
, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta
, Satu Koskinen, Suhaib Mohammed
, Matthew J. Geniza
, Justin Preece, Pankaj Jaiswal
, Andrew F. Jarnuczak
, Wolfgang Huber
, Oliver Stegle
, Juan Antonio Vizcaíno
, Alvis Brazma
, Robert Petryszak
:
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46(Database-Issue): D246-D251 (2018) - 2017
- [j11]Gautier Koscielny, Peter An, Denise Carvalho-Silva, Jennifer A. Cham
, Luca Fumis
, Rippa Gasparyan, Samiul Hasan, Nikiforos Karamanis
, Michael Maguire, Eliseo Papa
, Andrea Pierleoni, Miguel Pignatelli
, Theo Platt, Francis Rowland
, Priyanka Wankar, A. Patrícia Bento, Tony Burdett
, Antonio Fabregat
, Simon A. Forbes, Anna Gaulton, Cristina Yenyxe González
, Henning Hermjakob
, Anne Hersey, Steven Jupe
, Senay Kafkas, Maria Keays
, Catherine Leroy, Francisco-Javier Lopez, María P. Magariños
, James Malone, Johanna R. McEntyre, Alfonso Muñoz-Pomer Fuentes
, Claire O'Donovan
, Irene Papatheodorou
, Helen E. Parkinson
, Barbara Palka
, Justin E. Paschall, Robert Petryszak
, Naruemon Pratanwanich
, Sirarat Sarntivijai
, Gary Saunders
, Konstantinos Sidiropoulos
, Thomas Smith, Zbyslaw Sondka, Oliver Stegle, Y. Amy Tang
, Edward Turner, Brendan W. Vaughan, Olga Vrousgou, Xavier Watkins, Maria Jesus Martin, Philippe Sanseau, Jessica Vamathevan, Ewan Birney, Jeffrey Barrett, Ian Dunham:
Open Targets: a platform for therapeutic target identification and validation. Nucleic Acids Res. 45(Database-Issue): D985-D994 (2017) - 2016
- [j10]Daniel L. Greenfield, Oliver Stegle, Alban Rrustemi:
GeneCodeq: quality score compression and improved genotyping using a Bayesian framework. Bioinform. 32(20): 3124-3132 (2016) - [c16]Naruemon Pratanwanich
, Pietro Liò
, Oliver Stegle
:
Warped Matrix Factorisation for Multi-view Data Integration. ECML/PKDD (2) 2016: 789-804 - 2015
- [c15]Kjong-Van Lehmann, André Kahles, Cyriac Kandoth, William Lee, Nikolaus Schultz, Oliver Stegle, Gunnar Rätsch:
Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. Pacific Symposium on Biocomputing 2015: 44-55 - [c14]Joel T. Dudley, Jennifer Listgarten, Oliver Stegle, Steven E. Brenner, Leopold Parts:
Session introduction. Pacific Symposium on Biocomputing 2015: 342-346 - 2014
- [c13]Jennifer Listgarten, Oliver Stegle, Quaid Morris, Steven E. Brenner, Leopold Parts:
Session introduction. Pacific Symposium on Biocomputing 2014: 247-249 - 2013
- [j9]Barbara Rakitsch, Christoph Lippert
, Oliver Stegle
, Karsten M. Borgwardt
:
A Lasso multi-marker mixed model for association mapping with population structure correction. Bioinform. 29(2): 206-214 (2013) - [j8]Nicoló Fusi, Christoph Lippert
, Karsten M. Borgwardt
, Neil D. Lawrence
, Oliver Stegle
:
Detecting regulatory gene-environment interactions with unmeasured environmental factors. Bioinform. 29(11): 1382-1389 (2013) - [c12]Barbara Rakitsch, Christoph Lippert, Karsten M. Borgwardt, Oliver Stegle:
It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals. NIPS 2013: 1466-1474 - [c11]Oliver Stegle, Steven E. Brenner, Quaid Morris, Jennifer Listgarten:
Session introduction. Pacific Symposium on Biocomputing 2013: 171-174 - [c10]Quaid Morris, Steven E. Brenner, Jennifer Listgarten, Oliver Stegle:
The Future of Genome-Based Medicine. Pacific Symposium on Biocomputing 2013: 456-458 - 2012
- [j7]Theofanis Karaletsos, Oliver Stegle
, Christine Dreyer, John M. Winn, Karsten M. Borgwardt
:
ShapePheno: unsupervised extraction of shape phenotypes from biological image collections. Bioinform. 28(7): 1001-1008 (2012) - [j6]Nicoló Fusi, Oliver Stegle
, Neil D. Lawrence
:
Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies. PLoS Comput. Biol. 8(1) (2012) - [c9]Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten:
Session introduction. Pacific Symposium on Biocomputing 2012: 323-326 - [i2]Dominik Janzing, Eleni Sgouritsa, Oliver Stegle, Jonas Peters, Bernhard Schölkopf:
Detecting low-complexity unobserved causes. CoRR abs/1202.3737 (2012) - [i1]Dominik G. Grimm, Bastian Greshake, Stefan Kleeberger, Christoph Lippert, Oliver Stegle, Bernhard Schölkopf, Detlef Weigel, Karsten M. Borgwardt:
easyGWAS: An integrated interspecies platform for performing genome-wide association studies. CoRR abs/1212.4788 (2012) - 2011
- [j5]Karin Klotzbücher, Yasushi Kobayashi, Nino Shervashidze, Oliver Stegle, Bertram Müller-Myhsok, Detlef Weigel
, Karsten M. Borgwardt:
Efficient branch-and-bound techniques for two-locus association mapping. BMC Bioinform. 12(S-11): A3 (2011) - [c8]Oliver Stegle, Christoph Lippert, Joris M. Mooij, Neil D. Lawrence, Karsten M. Borgwardt:
Efficient inference in matrix-variate Gaussian models with \iid observation noise. NIPS 2011: 630-638 - [c7]Dominik Janzing, Eleni Sgouritsa, Oliver Stegle, Jonas Peters, Bernhard Schölkopf:
Detecting low-complexity unobserved causes. UAI 2011: 383-391 - 2010
- [j4]Oliver Stegle
, Katherine J. Denby
, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
:
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. J. Comput. Biol. 17(3): 355-367 (2010) - [j3]Oliver Stegle
, Leopold Parts
, Richard Durbin
, John M. Winn:
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. PLoS Comput. Biol. 6(5) (2010) - [c6]Joris M. Mooij, Oliver Stegle, Dominik Janzing, Kun Zhang, Bernhard Schölkopf:
Probabilistic latent variable models for distinguishing between cause and effect. NIPS 2010: 1687-1695
2000 – 2009
- 2009
- [j2]Oliver Stegle
, Linda Payet, Jean-Louis Mergny
, David J. C. MacKay, Julian Leon Huppert
:
Predicting and understanding the stability of G-quadruplexes. Bioinform. 25(12) (2009) - [c5]Oliver Stegle, Katherine J. Denby, David L. Wild, Stuart McHattie, Andrew Meade, Zoubin Ghahramani, Karsten M. Borgwardt:
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. GCB 2009: 133-142 - [c4]Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt:
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. RECOMB 2009: 201-216 - [c3]Christoph Lippert, Oliver Stegle, Zoubin Ghahramani, Karsten M. Borgwardt:
A kernel method for unsupervised structured network inference. AISTATS 2009: 368-375 - 2008
- [j1]Oliver Stegle
, Sebastian V. Fallert, David J. C. MacKay, Søren Brage:
Gaussian Process Robust Regression for Noisy Heart Rate Data. IEEE Trans. Biomed. Eng. 55(9): 2143-2151 (2008) - [c2]Ryan Prescott Adams, Oliver Stegle:
Gaussian process product models for nonparametric nonstationarity. ICML 2008: 1-8 - [c1]Oliver Stegle
, Anitha Kannan, Richard Durbin, John M. Winn:
Accounting for Non-genetic Factors Improves the Power of eQTL Studies. RECOMB 2008: 411-422
Coauthor Index
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last updated on 2024-06-10 20:30 CEST by the dblp team
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