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Joshua N. Adkins
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2020 – today
- 2021
- [j15]Ahmed A. Zayed
, Dominik Lücking
, Mohamed Mohssen
, Dylan Cronin, Ben Bolduc, Ann C. Gregory, Katherine R. Hargreaves
, Paul D. Piehowski
, Richard Allen White III
, Eric L. Huang, Joshua N. Adkins, Simon Roux
, Cristina Moraru, Matthew B. Sullivan
:
efam: an expanded, metaproteome-supported HMM profile database of viral protein families. Bioinform. 37(22): 4202-4208 (2021)
2010 – 2019
- 2019
- [j14]Ryan S. McClure, Jason P. Wendler
, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford
, Katrina M. Waters
, Jason E. McDermott
:
Unified feature association networks through integration of transcriptomic and proteomic data. PLoS Comput. Biol. 15(9) (2019) - 2013
- [j13]Brian J. Schmidt, Ali Ebrahim
, Thomas O. Metz
, Joshua N. Adkins, Bernhard Ø. Palsson, Daniel R. Hyduke:
GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data. Bioinform. 29(22): 2900-2908 (2013) - 2011
- [j12]Ines Thiele
, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen
, Susanna Bazzani, Pep Charusanti
, Feng-Chi Chen, Ronan M. T. Fleming
, Chao A. Hsiung, Sigrid C. J. De Keersmaecker
, Yu-Chieh Liao
, Kathleen Marchal
, Monica L. Mo, Emre Özdemir
, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir
, Jonas Steinmann, Suresh Sudarsan
, Neil Swainston, Inge M. Thijs, Karsten Zengler
, Bernhard O. Palsson, Joshua N. Adkins
, Dirk Bumann:
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst. Biol. 5: 8 (2011) - [j11]Hyunjin Yoon, Charles Ansong, Jason E. McDermott
, Marina A. Gritsenko, Richard D. Smith
, Fred Heffron, Joshua N. Adkins
:
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella. BMC Syst. Biol. 5: 100 (2011) - [j10]Pep Charusanti
, Sadhana Chauhan, Kathleen McAteer, Joshua A. Lerman
, Daniel R. Hyduke, Vladimir L. Motin
, Charles Ansong, Joshua N. Adkins
, Bernhard O. Palsson:
An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. BMC Syst. Biol. 5: 163 (2011) - 2010
- [j9]Anuj R. Shah, Joshua N. Adkins
, Douglas J. Baxter, William R. Cannon
, Daniel G. Chavarría-Miranda, Sutanay Choudhury, Ian Gorton, Deborah K. Gracio
, Todd D. Halter, Navdeep Jaitly, John R. Johnson, Richard T. Kouzes
, Matthew C. Macduff, Andrès Márquez, Matthew E. Monroe, Christopher S. Oehmen, William A. Pike, Chad Scherrer, Oreste Villa, Bobbie-Jo M. Webb-Robertson
, Paul D. Whitney, Nino Zuljevic:
Applications in Data-Intensive Computing. Adv. Comput. 79: 1-70 (2010) - [c5]Mudita Singhal, Anuj R. Shah, Joshua N. Adkins
, Roslyn Brown:
Using support vector machine for improving protein-protein interaction prediction utilizing domain interactions. BCB 2010: 537-545
2000 – 2009
- 2009
- [j8]Yuliya V. Karpievitch, Jeff Stanley, Thomas Taverner, Jianhua Huang, Joshua N. Adkins, Charles Ansong, Fred Heffron, Thomas O. Metz
, Wei-Jun Qian
, Hyunjin Yoon, Richard D. Smith
, Alan R. Dabney:
A statistical framework for protein quantitation in bottom-up MS-based proteomics. Bioinform. 25(16): 2028-2034 (2009) - [j7]Yuliya V. Karpievitch, Thomas Taverner, Joshua N. Adkins, Stephen J. Callister, Gordon A. Anderson, Richard D. Smith
, Alan R. Dabney:
Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition. Bioinform. 25(19): 2573-2580 (2009) - [j6]Navdeep Jaitly, Anoop M. Mayampurath, Kyle Littlefield, Joshua N. Adkins
, Gordon A. Anderson, Richard D. Smith
:
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data. BMC Bioinform. 10 (2009) - [c4]Anuj R. Shah, Navdeep Jaitly, Nino Zuljevic, Matthew E. Monroe, Andrei Liyu, Ashoka D. Polpitiya, Joshua N. Adkins
, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith, Ian Gorton:
An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry. eScience 2009: 88-93 - 2008
- [j5]Anoop M. Mayampurath, Navdeep Jaitly, Samuel O. Purvine
, Matthew E. Monroe, Kenneth J. Auberry, Joshua N. Adkins, Richard D. Smith
:
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra. Bioinform. 24(7): 1021-1023 (2008) - [j4]Ashoka D. Polpitiya, Wei-Jun Qian
, Navdeep Jaitly, Vladislav A. Petyuk
, Joshua N. Adkins, David G. Camp II, Gordon A. Anderson, Richard D. Smith
:
DAnTE: a statistical tool for quantitative analysis of -omics data. Bioinform. 24(13): 1556-1558 (2008) - [j3]Matthew E. Monroe, Jason L. Shaw, Don Simone Daly, Joshua N. Adkins
, Richard D. Smith
:
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features. Comput. Biol. Chem. 32(3): 215-217 (2008) - 2007
- [j2]Bobbie-Jo M. Webb-Robertson
, Elena S. Peterson, Mudita Singhal, Kyle R. Klicker, Christopher S. Oehmen, Joshua N. Adkins, Susan L. Havre:
PQuad - a visual analysis platform for proteomic data exploration of microbial organisms. Bioinform. 23(13): 1705-1707 (2007) - [j1]Matthew E. Monroe, Nikola Tolic, Navdeep Jaitly, Jason L. Shaw, Joshua N. Adkins, Richard D. Smith
:
VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinform. 23(15): 2021-2023 (2007) - 2006
- [c3]Bobbie-Jo M. Webb-Robertson, William R. Cannon, Joshua N. Adkins, Deborah K. Gracio:
Session Introduction. Pacific Symposium on Biocomputing 2006: 212-218 - [c2]Christopher S. Oehmen, Lee Ann McCue
, Joshua N. Adkins
, Katrina M. Waters
, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson
, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker:
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. SC 2006: 299 - 2004
- [c1]Joel C. Hunter, Joshua N. Adkins, Joel G. Pounds, John H. Miller:
Facilitating interpretation of mass spectrometry based proteomics data. METMBS 2004: 471-477
Coauthor Index
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