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ORCIDBruce Fischl
Bruce R. Fischl
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- affiliation: Massachusetts General Hospital, Charlestown, MA, USA
- affiliation: Harvard Medical School, Department of Radiology, USA
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2020 – today
- 2024
[j135]Jian Li
, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Adrian V. Dalca, Bruce Fischl:
JOSA: Joint surface-based registration and atlas construction of brain geometry and function. Medical Image Anal. 98: 103292 (2024)- [c47]Sean I. Young, Yaël Balbastre, Bruce Fischl, Polina Golland, Juan Eugenio Iglesias:
Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI. CVPR 2024: 11535-11545 - [c46]William Kelley, Nathan Ngo, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei, Malte Hoffmann:
Boosting Skull-Stripping Performance for Pediatric Brain Images. ISBI 2024: 1-5 - [i29]William Kelley, Nathan Ngo, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei, Malte Hoffmann:
Boosting Skull-Stripping Performance for Pediatric Brain Images. CoRR abs/2402.16634 (2024) - [i28]Etienne Chollet, Yaël Balbastre, Caroline Magnain, Bruce Fischl, Hui Wang:
A label-free and data-free training strategy for vasculature segmentation in serial sectioning OCT data. CoRR abs/2405.13757 (2024) - [i27]Etienne Chollet, Yaël Balbastre, Chiara Mauri, Caroline Magnain, Bruce Fischl, Hui Wang:
Neurovascular Segmentation in sOCT with Deep Learning and Synthetic Training Data. CoRR abs/2407.01419 (2024) - 2023
- [j134]Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining. Medical Image Anal. 86: 102789 (2023) - [c45]Iman Aganj, Bruce Fischl:
Intermediate Deformable Image Registration Via Windowed Cross-Correlation. ISBI 2023: 1-5 - [c44]Anees Kazi, Jocelyn S. Mora, Bruce Fischl, Adrian V. Dalca, Iman Aganj:
Multi-head Graph Convolutional Network for Structural Connectome Classification. GRAIL/OCELOT@MICCAI 2023: 27-36 - [c43]Nalini M. Singh, Neel Dey, Malte Hoffmann, Bruce Fischl, Elfar Adalsteinsson, Robert Frost, Adrian V. Dalca, Polina Golland:
Data Consistent Deep Rigid MRI Motion Correction. MIDL 2023: 368-381 - [c42]Jian Li, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Bruce Fischl, Adrian V. Dalca:
Joint cortical registration of geometry and function using semi-supervised learning. MIDL 2023: 862-876 - [c41]Malte Hoffmann, Andrew Hoopes, Bruce Fischl, Adrian V. Dalca:
Anatomy-specific acquisition-agnostic affine registration learned from fictitious images. Image Processing 2023 - [i26]Nalini M. Singh, Neel Dey, Malte Hoffmann, Bruce Fischl, Elfar Adalsteinsson, Robert Frost, Adrian V. Dalca, Polina Golland:
Data Consistent Deep Rigid MRI Motion Correction. CoRR abs/2301.10365 (2023) - [i25]Malte Hoffmann, Andrew Hoopes, Douglas N. Greve, Bruce Fischl, Adrian V. Dalca:
Anatomy-aware and acquisition-agnostic joint registration with SynthMorph. CoRR abs/2301.11329 (2023) - [i24]Jian Li, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Bruce Fischl, Adrian V. Dalca:
Joint cortical registration of geometry and function using semi-supervised learning. CoRR abs/2303.01592 (2023) - [i23]Anees Kazi, Jocelyn S. Mora, Bruce Fischl, Adrian V. Dalca, Iman Aganj:
Multi-Head Graph Convolutional Network for Structural Connectome Classification. CoRR abs/2305.02199 (2023) - [i22]Jian Li, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Adrian V. Dalca, Bruce Fischl:
JOSA: Joint surface-based registration and atlas construction of brain geometry and function. CoRR abs/2311.08544 (2023) - [i21]Sean I. Young, Yaël Balbastre, Bruce Fischl, Polina Golland, Juan Eugenio Iglesias:
Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI. CoRR abs/2312.03102 (2023) - 2022
- [j133]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022) - [j132]Divya Varadarajan, Caroline Magnain, Morgan Fogarty, David A. Boas, Bruce Fischl, Hui Wang:
A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images. NeuroImage 257: 119304 (2022) - [j131]Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann:
SynthStrip: skull-stripping for any brain image. NeuroImage 260: 119474 (2022) - [j130]Jiarui Yang, Shuaibin Chang, Ichun Anderson Chen, Sreekanth Kura, Grace A. Rosen, Nicole A. Saltiel, Bertrand R. Huber, Divya Varadarajan, Yaël Balbastre, Caroline Magnain, Shih-Chi Chen, Bruce Fischl, Ann C. McKee, David A. Boas, Hui Wang:
Volumetric Characterization of Microvasculature in Ex Vivo Human Brain Samples By Serial Sectioning Optical Coherence Tomography. IEEE Trans. Biomed. Eng. 69(12): 3645-3656 (2022) - [j129]Malte Hoffmann, Benjamin Billot, Douglas N. Greve, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. IEEE Trans. Medical Imaging 41(3): 543-558 (2022) - [c40]Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca:
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. MIDL 2022: 508-520 - [c39]Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. WBIR 2022: 103-115 - [i20]Sean I. Young, Adrian V. Dalca, Enzo Ferrante, Polina Golland, Bruce Fischl, Juan Eugenio Iglesias:
SUD: Supervision by Denoising for Medical Image Segmentation. CoRR abs/2202.02952 (2022) - [i19]Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann:
SynthStrip: Skull-Stripping for Any Brain Image. CoRR abs/2203.09974 (2022) - [i18]Andrew Hoopes, Malte Hoffmann, Douglas N. Greve, Bruce Fischl, John V. Guttag, Adrian V. Dalca:
Learning the Effect of Registration Hyperparameters with HyperMorph. CoRR abs/2203.16680 (2022) - [i17]Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. CoRR abs/2205.07399 (2022) - 2021
- [j128]Aina Frau-Pascual, Jean Augustinack, Divya Varadarajan, Anastasia Yendiki, David H. Salat, Bruce Fischl, Iman Aganj:
Conductance-Based Structural Brain Connectivity in Aging and Dementia. Brain Connect. 11(7): 566-583 (2021) - [j127]Donatas Sederevicius, Dídac Vidal-Piñeiro, Øystein Sørensen, Koenraad Van Leemput, Juan Eugenio Iglesias, Adrian V. Dalca, Douglas N. Greve, Bruce Fischl, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell:
Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. NeuroImage 237: 118113 (2021) - [j126]Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, R. Gilberto González, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. NeuroImage 237: 118206 (2021) - [j125]Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack:
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. NeuroImage 244: 118610 (2021) - [j124]Robert Jones, Chiara Maffei, Jean Augustinack, Bruce Fischl, Hui Wang, Berkin Bilgic, Anastasia Yendiki:
High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation. NeuroImage 244: 118621 (2021) - [j123]Chao J. Liu, William Ammon, Viviana Siless, Morgan Fogarty, Ruopeng Wang, Alessia Atzeni, Iman Aganj, Juan Eugenio Iglesias, Lilla Zöllei, Bruce Fischl, Jeremy D. Schmahmann, Hui Wang:
Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage 244: 118627 (2021) - [j122]Jian Li, William H. Curley, Bastien Guérin, Darin D. Dougherty, Adrian V. Dalca, Bruce Fischl, Andreas Horn, Brian L. Edlow:
Mapping the subcortical connectivity of the human default mode network. NeuroImage 245: 118758 (2021) - [j121]Iman Aganj, Bruce Fischl:
Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value. IEEE Trans. Medical Imaging 40(6): 1702-1710 (2021) - [c38]Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca:
HyperMorph: Amortized Hyperparameter Learning for Image Registration. IPMI 2021: 3-17 - [c37]Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Mri Contrast-Agnostic Registration. ISBI 2021: 899-903 - [d4]Giacomo Mazzamuto, Irene Costantini, Vladislav Gavryusev, Filippo Maria Castelli, Luca Pesce, Marina Scardigli, Matteo Roffilli, Ludovico Silvestri, Francesco Saverio Pavone, Patrick Hof, David A. Boas, Jiarui Yang, Leah Morgan, Bruce Fischl:
Broca's Area Light-Sheet Microscopy. Zenodo, 2021
- [d3]Giacomo Mazzamuto, Irene Costantini, Vladislav Gavryusev, Filippo Maria Castelli, Luca Pesce, Marina Scardigli, Matteo Roffilli, Ludovico Silvestri, Francesco Saverio Pavone, Patrick Hof, David A. Boas, Jiarui Yang, Leah Morgan, Bruce Fischl:
Broca's Area Light-Sheet Microscopy. Zenodo, 2021 - [d2]Giacomo Mazzamuto, Irene Costantini, Vladislav Gavryusev, Filippo Maria Castelli, Luca Pesce, Marina Scardigli, Matteo Roffilli, Ludovico Silvestri, Francesco Saverio Pavone, Patrick Hof, David A. Boas, Jiarui Yang, Leah Morgan, Bruce Fischl:
Broca's Area Light-Sheet Microscopy. Zenodo, 2021 - [d1]Giacomo Mazzamuto, Irene Costantini, Vladislav Gavryusev, Filippo Maria Castelli, Luca Pesce, Marina Scardigli, Matteo Roffilli, Ludovico Silvestri, Francesco Saverio Pavone, Patrick Hof, David A. Boas, Jiarui Yang, Leah Morgan, Bruce Fischl:
Broca's Area Light-Sheet Microscopy. Zenodo, 2021 - [i16]Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca:
HyperMorph: Amortized Hyperparameter Learning for Image Registration. CoRR abs/2101.01035 (2021) - [i15]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021) - [i14]Divya Varadarajan, Katherine L. Bouman, André J. W. van der Kouwe, Bruce Fischl, Adrian V. Dalca:
Unsupervised learning of MRI tissue properties using MRI physics models. CoRR abs/2107.02704 (2021) - [i13]Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. CoRR abs/2107.09559 (2021) - 2020
- [j120]Emma M. Brown, Meghan E. Pierce, Dustin C. Clark, Bruce R. Fischl, Juan Eugenio Iglesias, William P. Milberg, Regina E. McGlinchey, David H. Salat:
Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. NeuroImage 210: 116563 (2020) - [j119]Robert Jones, Giorgia Grisot, Jean Augustinack, Caroline Magnain, David A. Boas, Bruce Fischl, Hui Wang, Anastasia Yendiki:
Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. NeuroImage 214: 116704 (2020) - [j118]Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Patricia Ellen Grant, Bruce Fischl:
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. NeuroImage 218: 116946 (2020) - [j117]Leonie Henschel, Sailesh Conjeti, Santiago Estrada, Kersten Diers, Bruce Fischl, Martin Reuter:
FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. NeuroImage 219: 117012 (2020) - [j116]Jieyu Cheng, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei, Alzheimer's Disease Neuroimaging Initiative:
Cortical surface registration using unsupervised learning. NeuroImage 221: 117161 (2020) - [c36]Leonie Henschel, Sailesh Conjeti, Santiago Estrada, Kersten Diers, Bruce Fischl, Martin Reuter:
Abstract: FastSurfer. Bildverarbeitung für die Medizin 2020: 208 - [c35]Iman Aganj, Aina Frau-Pascual, Juan Eugenio Iglesias, Anastasia Yendiki, Jean C. Augustinack, David H. Salat, Bruce Fischl:
Compensatory Brain Connection Discovery in Alzheimer's Disease. ISBI 2020: 283-287 - [c34]Henry F. J. Tregidgo, Adrià Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology. MICCAI (5) 2020: 204-214 - [c33]Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. MIDL 2020: 75-93 - [i12]Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. CoRR abs/2003.01995 (2020) - [i11]Jieyu Cheng, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei:
Cortical surface registration using unsupervised learning. CoRR abs/2004.04617 (2020) - [i10]Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Multi-Modal Image Registration without Real Data. CoRR abs/2004.10282 (2020) - [i9]Henry F. J. Tregidgo, Adria Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology. CoRR abs/2009.05596 (2020) - [i8]Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. CoRR abs/2012.13340 (2020)
2010 – 2019
- 2019
- [j115]Susan Y. Bookheimer, David H. Salat, Melissa Terpstra, Beau M. Ances, Deanna M. Barch, Randy L. Buckner, Gregory C. Burgess, Sandra W. Curtiss, Mirella Diaz-Santos, Jennifer Stine Elam, Bruce Fischl, Douglas N. Greve, Hannah A. Hagy, Michael P. Harms, Olivia M. Hatch, Trey Hedden, Cynthia Hodge, Kevin C. Japardi, Essa Yacoub:
The Lifespan Human Connectome Project in Aging: An overview. NeuroImage 185: 335-348 (2019) - [j114]Aina Frau-Pascual, Morgan Fogarty, Bruce Fischl, Anastasia Yendiki, Iman Aganj:
Quantification of structural brain connectivity via a conductance model. NeuroImage 189: 485-496 (2019) - [j113]Anna I. Blazejewska, Bruce Fischl, Lawrence L. Wald, Jonathan R. Polimeni:
Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. NeuroImage 189: 601-614 (2019) - [j112]Michael A. Cohen, Daniel D. Dilks, Kami Koldewyn, Sarah Weigelt, Jenelle Feather, Alexander J. E. Kell, Boris Keil, Bruce Fischl, Lilla Zöllei, Lawrence L. Wald, Rebecca Saxe, Nancy Kanwisher:
Representational similarity precedes category selectivity in the developing ventral visual pathway. NeuroImage 197: 565-574 (2019) - [j111]Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl:
PSACNN: Pulse sequence adaptive fast whole brain segmentation. NeuroImage 199: 553-569 (2019) - [c32]Aina Frau-Pascual, Jean Augustinack, Divya Varadarajan, Anastasia Yendiki, Bruce Fischl, Iman Aganj:
Detecting Structural Brain Connectivity Differences in Dementia Through a Conductance Model. ACSSC 2019: 591-595 - [c31]Iman Aganj, Bruce Fischl:
Expected Label Value Computation for Atlas-Based Image Segmentation. ISBI 2019: 334-338 - [c30]Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. MICCAI (3) 2019: 356-365 - [i7]Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl:
PSACNN: Pulse Sequence Adaptive Fast Whole Brain Segmentation. CoRR abs/1901.05992 (2019) - [i6]Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised deep learning for Bayesian brain MRI segmentation. CoRR abs/1904.11319 (2019) - [i5]Amod Jog, Patricia Ellen Grant, Joseph L. Jacobson, André J. W. van der Kouwe, Ernesta M. Meintjes, Bruce Fischl, Lilla Zöllei:
Fast Infant MRI Skullstripping with Multiview 2D Convolutional Neural Networks. CoRR abs/1904.12101 (2019) - [i4]Leonie Henschel, Sailesh Conjeti, Santiago Estrada, Kersten Diers, Bruce Fischl, Martin Reuter:
FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. CoRR abs/1910.03866 (2019) - 2018
- [j110]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Medical Image Anal. 50: 127-144 (2018) - [j109]Natalia Zaretskaya, Bruce Fischl, Martin Reuter, Ville Renvall, Jonathan R. Polimeni:
Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. NeuroImage 165: 11-26 (2018) - [j108]Hui Wang, Caroline Magnain, Ruopeng Wang, Jay Dubb, Ani Varjabedian, Lee S. Tirrell, Allison Stevens, Jean C. Augustinack, Ender Konukoglu, Iman Aganj, Matthew P. Frosch, Jeremy D. Schmahmann, Bruce Fischl, David A. Boas:
as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. NeuroImage 165: 56-68 (2018) - [j107]Viviana Siless, Ken Chang, Bruce Fischl, Anastasia Yendiki:
AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity. NeuroImage 166: 32-45 (2018) - [j106]Jonathan R. Polimeni, Ville Renvall, Natalia Zaretskaya, Bruce Fischl:
Analysis strategies for high-resolution UHF-fMRI data. NeuroImage 168: 296-320 (2018) - [j105]Marta Bianciardi, Christian Strong, Nicola Toschi, Brian L. Edlow, Bruce Fischl, Emery N. Brown, Bruce R. Rosen, Lawrence L. Wald:
A probabilistic template of human mesopontine tegmental nuclei from in vivo 7 T MRI. NeuroImage 170: 222-230 (2018) - [j104]Douglas N. Greve, Bruce Fischl:
False positive rates in surface-based anatomical analysis. NeuroImage 171: 6-14 (2018) - [j103]Bruce Fischl, Martin I. Sereno:
Microstructural parcellation of the human brain. NeuroImage 182: 219-231 (2018) - [j102]Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. NeuroImage 183: 314-326 (2018) - [c29]Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren:
Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. MICCAI (2) 2018: 147-155 - [c28]Amod Jog, Bruce Fischl:
Pulse Sequence Resilient Fast Brain Segmentation. MICCAI (3) 2018: 654-662 - [i3]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. CoRR abs/1801.05284 (2018) - [i2]Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. CoRR abs/1806.08634 (2018) - [i1]Amod Jog, Bruce Fischl:
Pulse Sequence Resilient Fast Brain Segmentation. CoRR abs/1807.11598 (2018) - 2017
- [j101]Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl:
Mid-space-independent deformable image registration. NeuroImage 152: 158-170 (2017) - [j100]Zeynep M. Saygin, Dorit Kliemann, Juan Eugenio Iglesias, André J. W. van der Kouwe, Ellen Boyd, Martin Reuter, Allison Stevens, Koenraad Van Leemput, Alexis McKee, Matthew P. Frosch, Bruce Fischl, Jean C. Augustinack:
High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. NeuroImage 155: 370-382 (2017) - [j99]Tong Tong, Iman Aganj, Tian Ge, Jonathan R. Polimeni, Bruce Fischl:
Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. NeuroImage 158: 346-355 (2017) - [j98]Iman Aganj, Bruce Fischl:
Multimodal Image Registration Through Simultaneous Segmentation. IEEE Signal Process. Lett. 24(11): 1661-1665 (2017) - 2016
- [j97]M. Dylan Tisdall, Martin Reuter, Abid Y. Qureshi, Randy L. Buckner, Bruce Fischl, André J. W. van der Kouwe:
Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion. NeuroImage 127: 11-22 (2016) - [j96]Anastasia Yendiki, Martin Reuter, Paul Wilkens, H. Diana Rosas, Bruce Fischl:
Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors. NeuroImage 127: 277-286 (2016) - [j95]Ender Konukoglu, Jean-Philippe Coutu, David H. Salat, Bruce Fischl:
Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. NeuroImage 134: 573-586 (2016) - [j94]Juan Eugenio Iglesias, Koen Van Leemput, Jean Augustinack, Ricardo Insausti, Bruce Fischl, Martin Reuter:
Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. NeuroImage 141: 542-555 (2016) - [c27]Subhranil Koley, Chandan Chakraborty, Caterina Mainero, Bruce Fischl, Iman Aganj:
A Fast Approach to Automatic Detection of Brain Lesions. BrainLes@MICCAI 2016: 52-61 - [c26]Viviana Siless, Ken Chang, Bruce Fischl, Anastasia Yendiki:
Hierarchical Clustering of Tractography Streamlines Based on Anatomical Similarity. MICCAI (1) 2016: 184-191 - 2015
- [j93]Rebecca Shafee, Randy L. Buckner, Bruce Fischl:
Gray matter myelination of 1555 human brains using partial volume corrected MRI images. NeuroImage 105: 473-485 (2015) - [j92]Iman Aganj, Martin Reuter, Mert R. Sabuncu, Bruce Fischl:
Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint. NeuroImage 106: 238-251 (2015) - [j91]Juan Eugenio Iglesias, Mert Rory Sabuncu, Iman Aganj, Priyanka Bhatt, Christen Casillas, David H. Salat, Adam L. Boxer, Bruce Fischl, Koen Van Leemput:
An algorithm for optimal fusion of atlases with different labeling protocols. NeuroImage 106: 451-463 (2015) - [j90]Martin Reuter, M. Dylan Tisdall, Abid Y. Qureshi, Randy L. Buckner, André J. W. van der Kouwe, Bruce Fischl:
Head motion during MRI acquisition reduces gray matter volume and thickness estimates. NeuroImage 107: 107-115 (2015) - [j89]Mert R. Sabuncu, Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl:
Corrigendum to "Event time analysis of longitudinal neuroimage data" [NeuroImage 97 (15 August 2014) 9-18]. NeuroImage 108: 74 (2015) - [j88]Jorge L. Bernal-Rusiel, Douglas N. Greve, Martin Reuter, Bruce Fischl, Mert R. Sabuncu:
Corrigendum to "Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models" [NeuroImage 66 (1 February 2013) 249-260]. NeuroImage 108: 110 (2015) - [j87]Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl, Mert R. Sabuncu:
Corrigendum to "Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data" [NeuroImage 81 (1 November 2013) 358-370]. NeuroImage 108: 123 (2015) - [j86]Christian Wachinger, Polina Golland, William S. Kremen, Bruce Fischl, Martin Reuter:
BrainPrint: A discriminative characterization of brain morphology. NeuroImage 109: 232-248 (2015) - [j85]Juan Eugenio Iglesias, Koen Van Leemput, Priyanka Bhatt, Christen Casillas, Shubir Dutt, Norbert Schuff, Diana Truran-Sacrey, Adam L. Boxer, Bruce Fischl:
Bayesian segmentation of brainstem structures in MRI. NeuroImage 113: 184-195 (2015) - [j84]Juan Eugenio Iglesias, Jean C. Augustinack, Khoa Nguyen, Christopher M. Player, Allison Player, Michelle Wright, Nicole Roy, Matthew P. Frosch, Ann C. McKee, Lawrence L. Wald, Bruce Fischl, Koen Van Leemput:
A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. NeuroImage 115: 117-137 (2015) - [j83]