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Alexander García Castro
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2020 – today
- 2020
- [j13]Leyla J. García
, Erick Antezana
, Alexander García Castro
, Evan Bolton
, Rafael C. Jiménez
, Pjotr Prins
, Juan M. Banda
, Toshiaki Katayama
:
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16(5) (2020) - [i3]Rutger A. Vos
, Toshiaki Katayama
, Hiroyuki Mishima
, Shin Kawano
, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya
, Toshiaki Tokimatsu, Atsuko Yamaguchi
, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana
, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman
, Evan E. Bolton
, Raoul Jean Pierre Bonnal, Hidemasa Bono
, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis
, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima
, Alexander García Castro, Naohisa Goto, Tudor Groza
, Colin Hercus, Robert Hoehndorf
, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera
, Kouji Kozaki
, Sadahiro Kumagai, Tatsuya Kushida
, Thomas Lütteke
, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen
, Hiroshi Mori, Yuki Naito, Takeru Nakazato
, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta
, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati
, Pjotr Prins
, Núria Queralt-Rosinach
, Daisuke Shinmachi, Shinya Suzuki
, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor
, Mark Thompson, Ikuo Uchiyama
, Bruno Vieira, Chih-Hsuan Wei
, Mark D. Wilkinson
, Issaku Yamada
, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2017
- [j12]Olga L. Giraldo
, Alexander García Castro
, Federico López
, Óscar Corcho:
Using semantics for representing experimental protocols. J. Biomed. Semant. 8(1): 52:1-52:15 (2017) - [c22]Alexander García Castro, Erick Antezana, Jael García, Olga L. Giraldo, Pjotr Prins, Rutger A. Vos:
Shō-coin: A Knowledge-Based Economy for Life Sciences. SWAT4LS 2017 - [c21]Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community:
Bioschemas: schema.org for the Life Sciences. SWAT4LS 2017 - 2015
- [j11]Andrés García-Silva, Leyla Jael García Castro
, Alexander García Castro, Óscar Corcho
:
Building Domain Ontologies Out of Folksonomies and Linked Data. Int. J. Artif. Intell. Tools 24(2): 1540014:1-1540014:22 (2015) - [j10]Leyla Jael García Castro
, Rafael Berlanga Llavori
, Alexander García Castro:
In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access. J. Biomed. Informatics 57: 204-218 (2015) - [c20]Olga L. Giraldo, Alexander García Castro, Óscar Corcho:
Using Semantics and NLP in the SMART Protocols Repository. ICBO 2015 - [c19]Alexander García Castro, Isabel Barth, Erich Weichselgartner
:
KOBPSY, a knowledge base in psychology and behavioral sciences. I-KNOW 2015: 29:1-29:4 - [c18]Olga L. Giraldo, Alexander García Castro, Óscar Corcho, Jose Figueredo:
Using Semantics and NLP in Experimental Protocols. SWAT4LS 2015: 132-141 - [e5]Axel Polleres, Alexander García Castro, V. Richard Benjamins:
Proceedings of the Industry Track at the International Semantic Web Conference 2014 Co-located with the 13th International Semantic Web Conference (ISWC 2014), Riva del Garda, Italy, October 19-23, 2014. CEUR Workshop Proceedings 1383, CEUR-WS.org 2015 [contents] - [i2]Alexander García Castro, Janna Hastings, Robert Stevens, Erich Weichselgartner:
Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302). Dagstuhl Reports 5(7): 42-68 (2015) - 2014
- [c17]Olga L. Giraldo, Alexander García Castro, Óscar Corcho:
SMART Protocols: SeMAntic RepresenTation for Experimental Protocols. LISC@ISWC 2014: 36-47 - [c16]Andrés García-Silva, Leyla Jael García Castro
, Alexander García Castro, Óscar Corcho
:
Social Tags and Linked Data for Ontology Development: A Case Study in the Financial Domain. WIMS 2014: 32:1-32:10 - [e4]Alexander García Castro, Christoph Lange, Phillip W. Lord, Robert Stevens:
Proceedings of the 4th Workshop on Semantic Publishing co-located with the 11th Extended Semantic Web Conference (ESWC 2014), Anissaras, Greece, May 25th, 2014. CEUR Workshop Proceedings 1155, CEUR-WS.org 2014 [contents] - [i1]Manuel Corpas
, Rafael C. Jiménez
, Seth Carbon, Alexander García Castro, Leyla Jael Castro
, Tatyana Goldberg, John Gómez, Alex Kalderimis, Suzanna E. Lewis, Ian Mulvany
, Aleksandra Pawlik, Francis Rowland
, Gustavo A. Salazar
, Fabian Schreiber, Ian Sillitoe, William Spooner, Anil S. Thanki
, Jose M. Villaveces, Guy Yachdav, Henning Hermjakob
:
BioJS: an open source standard for biological visualisation - its status in 2014. F1000Research 3: 55 (2014) - 2013
- [j9]John Gómez, Leyla J. García
, Gustavo A. Salazar
, Jose M. Villaveces, Swanand P. Gore
, Alexander García Castro
, Maria Jesus Martin
, Guillaume Launay
, Rafael Alcántara
, Noemi del-Toro
, Marine Dumousseau, Sandra E. Orchard
, Sameer Velankar
, Henning Hermjakob
, Chenggong Zong, Peipei Ping
, Manuel Corpas
, Rafael C. Jiménez
:
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013) - [j8]Leyla Jael García Castro, Casey McLaughlin, Alexander García Castro:
Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J. Biomed. Semant. 4(S-1): S5 (2013) - [c15]Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander García Castro:
Connections across Scientific Publications based on Semantic Annotations. SePublica 2013: 51-62 - [c14]Nestor Velasco Bermeo
, Miguel González-Mendoza, Alexander García Castro:
Semantic Representation of CAD Models Based on the IGES Standard. MICAI (1) 2013: 157-168 - [e3]Alexander García Castro, Christoph Lange, Phillip W. Lord, Robert Stevens:
Proceedings of the 3rd Workshop on Semantic Publishing, Montpellier, France, May 26th, 2013. CEUR Workshop Proceedings 994, CEUR-WS.org 2013 [contents] - 2012
- [c13]Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using annotations to model discourse: an extension to the Annotation Ontology. SePublica@ESWC 2012: 13-22 - [c12]Nestor Velasco Bermeo
, Miguel González-Mendoza
, Alexander García Castro, Irais Heras Dueñas:
Towards the Creation of Semantic Models Based on Computer-Aided Designs. MICAI (1) 2012: 298-310 - [c11]Leyla Jael García Castro, Alexander García Castro, John Gómez:
Conceptual Exploration of Documents and Digital Libraries in the Biomedical Domain. SWAT4LS 2012 - [e2]Alexander García Castro, Christoph Lange, Frank van Harmelen, Benjamin M. Good:
Proceedings of the 2nd Workshop on Semantic Publishing, co-located with the 9th Extended Semantic Web Conference, SePublica@ESWC 2012, Hersonissos, Crete, Greece, May 28, 2012. CEUR Workshop Proceedings 903, CEUR-WS.org 2012 [contents] - 2011
- [j7]Jose M. Villaveces, Rafael C. Jiménez
, Leyla J. García
, Gustavo A. Salazar
, Bernat Gel
, Nicola J. Mulder
, Maria Jesus Martin
, Alexander García Castro, Henning Hermjakob
:
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011) - [j6]Gustavo A. Salazar
, Rafael C. Jiménez
, Alexander García Castro, Henning Hermjakob
, Nicola J. Mulder
, Edwin H. Blake
:
DAS Writeback: A Collaborative Annotation System. BMC Bioinform. 12: 143 (2011) - [c10]Alexander García Castro, Olga L. Giraldo, Leyla J. García:
Annotating Experimental Records Using Ontologies. ICBO 2011 - [c9]Oliver Kutz, Till Mossakowski, Janna Hastings, Alexander García Castro, Aleksandra Sojic:
Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples. ICBO 2011 - [c8]Alexander García Castro, Leyla Jael García Castro
:
A translational model for representing research articles. SWAT4LS 2011: 20-21 - [c7]Leyla Jael García Castro
, Alexander García Castro:
Tagsty: augmented knowledge from community-based annotations on protein sequences. SWAT4LS 2011: 22-23 - [e1]Alexander García Castro, Christoph Lange, Evan Sandhaus, Anita de Waard:
Proceedings of the 1st Workshop on Semantic Publishing 2011, Hersonissos, Crete, Greece, May 30, 2011. CEUR Workshop Proceedings 721, CEUR-WS.org 2011 [contents] - 2010
- [j5]Alexander García Castro, Alberto Labarga
, Leyla J. García
, Olga L. Giraldo
, César Montaña, John A. Bateman
:
Semantic Web and Social Web heading towards Living Documents in the Life Sciences. J. Web Semant. 8(2-3): 155-162 (2010) - [c6]Leyla Jael García Castro
, Martin Hepp, Alexander García Castro:
TagSorting: A Tagging Environment for Collaboratively Building Ontologies. EKAW 2010: 462-472 - [c5]Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using the Annotation Ontology in Semantic Digital Libraries. ISWC (Posters & Demos) 2010 - [p1]Alexander García Castro, Kieran O'Neill
, Leyla Jael García Castro, Phillip W. Lord, Robert Stevens, Óscar Corcho
, Frank Gibson:
Developing Ontologies within Decentralised Settings. Semantic e-Science 2010: 99-139
2000 – 2009
- 2009
- [c4]Alexander García Castro, Leyla Jael García Castro
, Alberto Labarga
, Olga L. Giraldo, César Montaña, Kieran O'Neill, John A. Bateman
:
Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences. DEXA 2009: 287-301 - [c3]Leyla Jael García Castro
, Martin Hepp, Alexander García Castro:
Tags4Tags: Using Tagging to Consolidate Tags. DEXA 2009: 619-628 - 2008
- [j4]Rafael C. Jiménez
, Antony F. Quinn
, Alexander García Castro, Alberto Labarga
, Kieran O'Neill
, Fernando Martinez, Gustavo A. Salazar
, Henning Hermjakob
:
Dasty2, an Ajax protein DAS client. Bioinform. 24(18): 2119-2121 (2008) - [j3]Kieran O'Neill
, Alexander García Castro, Anita Schwegmann, Rafael C. Jiménez
, Dan Jacobson, Henning Hermjakob
:
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology. BMC Bioinform. 9 (2008) - [c2]Alexander García Castro, Angela Norena, Andres Betancourt, Leyla J. García:
CMAPS Supporting the Development of OWL Ontologies. ISWC (Posters & Demos) 2008 - [c1]Dionysios D. Kehagias, Alexander García Castro, Dimitrios Tzovaras, Dimitrios Giakoumis:
A Semantic Web Service Alignment Tool. ISWC (Posters & Demos) 2008 - 2006
- [j2]Alexander García Castro, Philippe Rocca-Serra, Robert Stevens, Chris F. Taylor, Karim Nashar, Mark A. Ragan
, Susanna-Assunta Sansone
:
The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case. BMC Bioinform. 7: 267 (2006) - 2005
- [j1]Alexander García Castro, Samuel Thoraval, Leyla J. García
, Mark A. Ragan
:
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. BMC Bioinform. 6: 87 (2005)
Coauthor Index
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