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2020 – today
- 2020
[j10]Maureen Kachman, Hani Habra
, William Duren, Janis E. Wigginton, Peter Sajjakulnukit, George Michailidis, Charles F. Burant, Alla Karnovsky:
Deep annotation of untargeted LC-MS metabolomics data with Binner. Bioinform. 36(6): 1801-1806 (2020)
2010 – 2019
- 2019
- [j9]Jing Ma, Alla Karnovsky, Farsad Afshinnia, Janis E. Wigginton, Daniel J. Rader, Loki Natarajan, Kumar Sharma, Anna C. Porter, Mahboob Rahman, Jiang He, Lee Hamm, Tariq Shafi, Debbie S. Gipson, Crystal Gadegbeku, Harold Feldman, George Michailidis:
Differential network enrichment analysis reveals novel lipid pathways in chronic kidney disease. Bioinform. 35(18): 3441-3452 (2019) - 2017
- [j8]Sumanta Basu, William Duren, Charles R. Evans, Charles F. Burant, George Michailidis, Alla Karnovsky:
Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data. Bioinform. 33(10): 1545-1553 (2017) - 2016
- [j7]Raymond G. Cavalcante, Snehal Patil, Terry E. Weymouth, Kestutis G. Bendinskas, Alla Karnovsky, Maureen A. Sartor:
ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts. Bioinform. 32(10): 1536-1543 (2016) - 2014
- [j6]William Duren, Terry E. Weymouth, Tim Hull, Gilbert S. Omenn, Brian D. Athey, Charles F. Burant, Alla Karnovsky:
MetDisease - connecting metabolites to diseases via literature. Bioinform. 30(15): 2239-2241 (2014) - [c3]Frank J. Manion, Elizabeth Eisenhauer, Alla Karnovsky, Yongqun He, Yu Lin, Marcelline R. Harris:
Analysis of Content Coverage for Informed Consent Concepts. AMIA 2014 - [c2]Yu Lin, Marcelline R. Harris, Frank J. Manion, Elizabeth Eisenhauer, Bin Zhao, Wei Shi, Alla Karnovsky, Yongqun He:
Development of a BFO-Based Informed Consent Ontology (ICO). ICBO 2014: 84-86 - 2012
- [j5]Alla Karnovsky, Terry E. Weymouth, Tim Hull, V. Glenn Tarcea, Giovanni Scardoni, Carlo Laudanna, Maureen A. Sartor, Kathleen A. Stringer, H. V. Jagadish, Charles F. Burant, Brian D. Athey, Gilbert S. Omenn:
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. Bioinform. 28(3): 373-380 (2012) - [j4]Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky:
Metab2MeSH: annotating compounds with medical subject headings. Bioinform. 28(10): 1408-1410 (2012) - [j3]Richard C. McEachin, Keerthi S. Sannareddy, James D. Cavalcoli, Alla Karnovsky, Jacqueline M. Vink, Maureen A. Sartor:
Convergence of genetic influences in comorbidity. BMC Bioinform. 13(S-2): S8 (2012) - [c1]Alla Karnovsky, Frank J. Manion, Terry E. Weymouth, V. Glenn Tarcea, Lisa Powell, Blake Roessler, Nicholas Steneck:
Development of an Informed Consent Ontology to Support Biobanking. AMIA 2012 - 2010
- [j2]Maureen A. Sartor, Vasudeva Mahavisno, Venkateshwar G. Keshamouni, James D. Cavalcoli, Zach Wright, Alla Karnovsky, Rork Kuick, H. V. Jagadish, Barbara Mirel, Terry E. Weymouth, Brian D. Athey, Gilbert S. Omenn:
ConceptGen: a gene set enrichment and gene set relation mapping tool. Bioinform. 26(4): 456-463 (2010) - [j1]Jing Gao, V. Glenn Tarcea, Alla Karnovsky, Barbara R. Mirel, Terry E. Weymouth, Christopher W. Beecher, James D. Cavalcoli, Brian D. Athey, Gilbert S. Omenn, Charles F. Burant, H. V. Jagadish:
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks. Bioinform. 26(7): 971-973 (2010)
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