![](https://dblp.org/img/logo.ua.320x120.png)
![](https://dblp.org/img/dropdown.dark.16x16.png)
![](https://dblp.org/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.org/img/search.dark.16x16.png)
![search dblp](https://dblp.org/img/search.dark.16x16.png)
default search action
Jouni Sirén
Person information
Refine list
![note](https://dblp.org/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
- [c18]Andrej Baláz, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén:
Wheeler Maps. LATIN (1) 2024: 178-192 - 2023
- [i15]Andrej Baláz, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén:
Wheeler maps. CoRR abs/2308.09836 (2023) - 2022
- [j11]Jouni Sirén
, Benedict Paten:
GBZ file format for pangenome graphs. Bioinform. 38(22): 5012-5018 (2022) - [j10]Jasmijn A. Baaijens, Paola Bonizzoni, Christina Boucher, Gianluca Della Vedova
, Yuri Pirola, Raffaella Rizzi
, Jouni Sirén:
Computational graph pangenomics: a tutorial on data structures and their applications. Nat. Comput. 21(1): 81-108 (2022) - 2021
- [c17]Marco Oliva, Massimiliano Rossi, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie, Christina Boucher:
Efficiently Merging r-indexes. DCC 2021: 203-212 - 2020
- [j9]Jouni Sirén, Erik Garrison, Adam M. Novak
, Benedict Paten, Richard Durbin
:
Haplotype-aware graph indexes. Bioinform. 36(2): 400-407 (2020) - [j8]Xian Chang, Jordan Eizenga, Adam M. Novak
, Jouni Sirén, Benedict Paten:
Distance indexing and seed clustering in sequence graphs. Bioinform. 36(Supplement-1): i146-i153 (2020)
2010 – 2019
- 2018
- [j7]Andrea Farruggia, Travis Gagie
, Gonzalo Navarro, Simon J. Puglisi
, Jouni Sirén:
Relative Suffix Trees. Comput. J. 61(5): 773-788 (2018) - [c16]Jouni Sirén, Erik Garrison, Adam M. Novak
, Benedict Paten, Richard Durbin:
Haplotype-aware graph indexes. WABI 2018: 4:1-4:13 - [i14]Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin:
Haplotype-aware graph indexes. CoRR abs/1805.03834 (2018) - 2017
- [j6]Travis Gagie
, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi
, Jouni Sirén
:
Document retrieval on repetitive string collections. Inf. Retr. J. 20(3): 253-291 (2017) - [j5]Travis Gagie
, Giovanni Manzini
, Jouni Sirén
:
Wheeler graphs: A framework for BWT-based data structures. Theor. Comput. Sci. 698: 67-78 (2017) - [c15]Jouni Sirén:
Indexing Variation Graphs. ALENEX 2017: 13-27 - 2016
- [c14]Jouni Sirén:
Burrows-Wheeler Transform for Terabases. DCC 2016: 211-220 - [c13]Anthony J. Cox, Andrea Farruggia, Travis Gagie
, Simon J. Puglisi, Jouni Sirén:
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. SPIRE 2016: 1-14 - [i13]Jouni Sirén:
Indexing Variation Graphs. CoRR abs/1604.06605 (2016) - [i12]Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén:
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. CoRR abs/1605.04421 (2016) - [i11]Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Retrieval on Repetitive String Collections. CoRR abs/1605.09362 (2016) - 2015
- [j4]Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen
, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki:
Fast in-memory XPath search using compressed indexes. Softw. Pract. Exp. 45(3): 399-434 (2015) - [c12]Travis Gagie
, Aleksi Hartikainen, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi
, Jouni Sirén:
Document Counting in Compressed Space. DCC 2015: 103-112 - [c11]Christina Boucher, Alexander Bowe, Travis Gagie
, Giovanni Manzini
, Jouni Sirén:
Relative Select. SPIRE 2015: 149-155 - [i10]Christina Boucher, Alexander Bowe, Travis Gagie, Giovanni Manzini, Jouni Sirén:
Relative Select. CoRR abs/1506.03262 (2015) - [i9]Travis Gagie, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Relative Compressed Suffix Trees. CoRR abs/1508.02550 (2015) - [i8]Jouni Sirén:
Burrows-Wheeler transform for terabases. CoRR abs/1511.00898 (2015) - 2014
- [j3]Veli Mäkinen
, Niko Välimäki, Jouni Sirén
:
Indexing Graphs for Path Queries with Applications in Genome Research. IEEE ACM Trans. Comput. Biol. Bioinform. 11(2): 375-388 (2014) - [c10]Gonzalo Navarro, Simon J. Puglisi
, Jouni Sirén:
Document Retrieval on Repetitive Collections. ESA 2014: 725-736 - [c9]Djamal Belazzougui, Travis Gagie, Simon Gog, Giovanni Manzini, Jouni Sirén:
Relative FM-Indexes. SPIRE 2014: 52-64 - [i7]Travis Gagie, Giovanni Manzini, Jouni Sirén:
Reusing an FM-index. CoRR abs/1404.4814 (2014) - [i6]Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Retrieval on Repetitive Collections. CoRR abs/1404.4909 (2014) - [i5]Travis Gagie, Aleksi Hartikainen, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Counting in Practice. CoRR abs/1409.6780 (2014) - 2013
- [j2]Paolo Ferragina
, Jouni Sirén, Rossano Venturini
:
Distribution-Aware Compressed Full-Text Indexes. Algorithmica 67(4): 529-546 (2013) - [c8]Travis Gagie
, Kalle Karhu, Gonzalo Navarro, Simon J. Puglisi
, Jouni Sirén:
Document Listing on Repetitive Collections. CPM 2013: 107-119 - 2012
- [b1]Jouni Sirén:
Compressed Full-Text Indexes for Highly Repetitive Collections. University of Helsinki, Finland, 2012 - 2011
- [c7]Paolo Ferragina
, Jouni Sirén, Rossano Venturini
:
Distribution-Aware Compressed Full-Text Indexes. ESA 2011: 760-771 - [c6]Jouni Sirén, Niko Välimäki, Veli Mäkinen
:
Indexing Finite Language Representation of Population Genotypes. WABI 2011: 270-281 - 2010
- [j1]Veli Mäkinen
, Gonzalo Navarro, Jouni Sirén
, Niko Välimäki:
Storage and Retrieval of Highly Repetitive Sequence Collections. J. Comput. Biol. 17(3): 281-308 (2010) - [c5]Jouni Sirén:
Sampled Longest Common Prefix Array. CPM 2010: 227-237 - [c4]Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen
, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki:
Fast in-memory XPath search using compressed indexes. ICDE 2010: 417-428 - [i4]Jouni Sirén:
Sampled Longest Common Prefix Array. CoRR abs/1001.2101 (2010) - [i3]Jouni Sirén, Niko Välimäki, Veli Mäkinen:
Indexing Finite Language Representation of Population Genotypes. CoRR abs/1010.2656 (2010)
2000 – 2009
- 2009
- [c3]Veli Mäkinen
, Gonzalo Navarro, Jouni Sirén, Niko Välimäki:
Storage and Retrieval of Individual Genomes. RECOMB 2009: 121-137 - [c2]Jouni Sirén:
Compressed Suffix Arrays for Massive Data. SPIRE 2009: 63-74 - [i2]Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki:
Fast In-Memory XPath Search over Compressed Text and Tree Indexes. CoRR abs/0907.2089 (2009) - 2008
- [c1]Jouni Sirén, Niko Välimäki, Veli Mäkinen
, Gonzalo Navarro:
Run-Length Compressed Indexes Are Superior for Highly Repetitive Sequence Collections. SPIRE 2008: 164-175 - [i1]Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki:
Storage and Retrieval of Individual Genomes. Structure-Based Compression of Complex Massive Data 2008
Coauthor Index
![](https://dblp.org/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-06-11 20:42 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint