default search action
Bridget T. McInnes
Person information
- affiliation: Virginia Commonwealth University, Department of Computer Science, Richmond, VA, USA
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
- [j29]Halil Kilicoglu, Faezeh Ensan, Bridget T. McInnes, Lucy Lu Wang:
Semantics-enabled biomedical literature analytics. J. Biomed. Informatics 150: 104588 (2024) - [i8]Bridget T. McInnes, Jiawei Tang, Darshini Mahendran, Mai H. Nguyen:
BioBERT-based Deep Learning and Merged ChemProt-DrugProt for Enhanced Biomedical Relation Extraction. CoRR abs/2405.18605 (2024) - [i7]Yujuan Fu, Giridhar Kaushik Ramachandran, Ahmad Halwani, Bridget T. McInnes, Fei Xia, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner:
CACER: Clinical Concept Annotations for Cancer Events and Relations. CoRR abs/2409.03905 (2024) - 2023
- [j28]Evan French, Bridget T. McInnes:
An overview of biomedical entity linking throughout the years. J. Biomed. Informatics 137: 104252 (2023) - [j27]Clint Cuffy, Bridget T. McInnes:
Exploring a deep learning neural architecture for closed Literature-based discovery. J. Biomed. Informatics 143: 104362 (2023) - 2022
- [j26]Amy L. Olex, Evan French, Peter Burdette, Srilakshmi Sagiraju, Thomas Neumann, Tamas S. Gal, Bridget T. McInnes:
TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4. Database J. Biol. Databases Curation 2022(2022) (2022) - [j25]Megan Davis, Bridget T. McInnes, Irfan Ahmed:
Forensic investigation of instant messaging services on linux OS: Discord and Slack as case studies. Digit. Investig. 42(Supplement): 301401 (2022) - [j24]Amy L. Olex, Bridget T. McInnes:
Temporal disambiguation of relative temporal expressions in clinical texts. Frontiers Res. Metrics Anal. 7 (2022) - [j23]Steele Farnsworth, Gabrielle Gurdin, Jorge Vargas, Andriy Mulyar, Nastassja Lewinski, Bridget T. McInnes:
Extracting experimental parameter entities from scientific articles. J. Biomed. Informatics 126: 103970 (2022) - [j22]Nicholas E. Rodriguez, Mai H. Nguyen, Bridget T. McInnes:
Effects of data and entity ablation on multitask learning models for biomedical entity recognition. J. Biomed. Informatics 130: 104062 (2022) - [j21]Halil Kilicoglu, Faezeh Ensan, Bridget T. McInnes, Lucy Lu Wang:
Call for papers: Semantics-enabled biomedical literature analytics. J. Biomed. Informatics 132: 104134 (2022) - [c37]Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) 2022: 758-781 - [c36]Darshini Mahendran, Christina Tang, Bridget T. McInnes:
NLPatVCU: CLEF 2022 ChEMU Shared Task System Description. CLEF (Working Notes) 2022: 808-820 - [c35]Faezeh Ensan, Halil Kilicoglu, Bridget T. McInnes, Lucy Lu Wang:
The International Workshop on Semantics-enabled Biomedical Literature Analytics (SeBiLAn). WWW (Companion Volume) 2022: 818-820 - [c34]Clint Cuffy, Evan French, Sophia Fehrmann, Bridget T. McInnes:
Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization. WWW (Companion Volume) 2022: 823-832 - [c33]Darshini Mahendran, Christina Tang, Bridget T. McInnes:
Graph Convolutional Networks for Chemical Relation Extraction. WWW (Companion Volume) 2022: 833-842 - 2021
- [j20]Darshini Mahendran, Changqing Luo, Bridget T. McInnes:
Review: Privacy-Preservation in the Context of Natural Language Processing. IEEE Access 9: 147600-147612 (2021) - [j19]Sam Henry, D. Shanaka Wijesinghe, Aidan Myers, Bridget T. McInnes:
Using Literature Based Discovery to Gain Insights Into the Metabolomic Processes of Cardiac Arrest. Frontiers Res. Metrics Anal. 6: 644728 (2021) - [j18]Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes:
Identifying Chemical Reactions and Their Associated Attributes in Patents. Frontiers Res. Metrics Anal. 6: 688353 (2021) - [j17]Andriy Mulyar, Özlem Uzuner, Bridget T. McInnes:
MT-clinical BERT: scaling clinical information extraction with multitask learning. J. Am. Medical Informatics Assoc. 28(10): 2108-2115 (2021) - [j16]Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner:
Transferability of neural network clinical deidentification systems. J. Am. Medical Informatics Assoc. 28(12): 2661-2669 (2021) - [j15]Amy L. Olex, Bridget T. McInnes:
Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be. J. Biomed. Informatics 118: 103784 (2021) - [i6]Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner:
Transferability of Neural Network-based De-identification Systems. CoRR abs/2102.08517 (2021) - [i5]Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner:
Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. CoRR abs/2102.11031 (2021) - [i4]Darshini Mahendran, Bridget T. McInnes:
Extracting Adverse Drug Events from Clinical Notes. CoRR abs/2104.10791 (2021) - 2020
- [j14]Corey Sutphin, Kahyun Lee, Antonio Jimeno-Yepes, Özlem Uzuner, Bridget T. McInnes:
Adverse drug event detection using reason assignments in FDA drug labels. J. Biomed. Informatics 110: 103552 (2020) - [j13]Clint Cuffy, Nao Hagiwara, Scott Vrana, Bridget T. McInnes:
Measuring the quality of patient-physician communication. J. Biomed. Informatics 112: 103589 (2020) - [c32]Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner:
Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. AMIA 2020 - [c31]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020 - [c30]Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes:
NLPatVCU CLEF 2020 ChEMU Shared Task System Description. CLEF (Working Notes) 2020 - [c29]Darshini Mahendran, Cora Lewis, Bridget T. McInnes:
NLP@VCU: Identifying Adverse Effects in English Tweets for Unbalanced Data. SMM4H@COLING 2020: 158-160 - [i3]Andriy Mulyar, Bridget T. McInnes:
MT-Clinical BERT: Scaling Clinical Information Extraction with Multitask Learning. CoRR abs/2004.10220 (2020)
2010 – 2019
- 2019
- [j12]Sam Henry, Alex McQuilkin, Bridget T. McInnes:
Association measures for estimating semantic similarity and relatedness between biomedical concepts. Artif. Intell. Medicine 93: 1-10 (2019) - [j11]Sam Henry, Bridget T. McInnes:
Indirect association and ranking hypotheses for literature based discovery. BMC Bioinform. 20(1): 425:1-425:19 (2019) - [c28]Rachel Dorn, Scott Vrana, Bridget T. McInnes:
Improving Accuracy of Patient Speech Transcription Using Dialect-Specific Automatic Speech Recognition Models. AMIA 2019 - [c27]Amy L. Olex, Tamás Gál, Majid Afshar, Dmitriy Dligach, Niranjan S. Karnik, Travis Oakes, Brihat Sharma, Meng Xie, Bridget T. McInnes, Julian Solway, Abel N. Kho, William Cramer, F. G. Moeller:
Untapped Potential of Clinical Text for Opioid Surveillance. AMIA 2019 - [c26]Jooho Lee, Catherine Blake, Bridget T. McInnes:
Evaluating ontology coverage and internal structure to better align patients with clinical trials. ASIST 2019: 157-165 - [c25]Amy L. Olex, Luke Maffey, Bridget T. McInnes:
NLP Whack-A-Mole: Challenges in Cross-Domain Temporal Expression Extraction. NAACL-HLT (1) 2019: 3682-3692 - 2018
- [j10]Sam Henry, Clint Cuffy, Bridget T. McInnes:
Vector representations of multi-word terms for semantic relatedness. J. Biomed. Informatics 77: 111-119 (2018) - [j9]Bartosz Krawczyk, Bridget T. McInnes:
Local ensemble learning from imbalanced and noisy data for word sense disambiguation. Pattern Recognit. 78: 103-119 (2018) - [c24]Amy L. Olex, Luke Maffey, Nicholas Morgan, Bridget T. McInnes:
Chrono at SemEval-2018 Task 6: A System for Normalizing Temporal Expressions. SemEval@NAACL-HLT 2018: 97-101 - [c23]Darshini Mahendran, Chathurika Brahmana, Bridget T. McInnes:
SciREL at SemEval-2018 Task 7: A System for Semantic Relation Extraction and Classification. SemEval@NAACL-HLT 2018: 853-857 - [i2]Andriy Mulyar, Darshini Mahendran, Luke Maffey, Amy L. Olex, Grant Matteo, Neha Dill, Nastassja Lewinski, Bridget T. McInnes:
TAC SRIE 2018: Extracting Systematic Review Information with MedaCy. TAC 2018 - 2017
- [j8]Sam Henry, Bridget T. McInnes:
Literature Based Discovery: Models, methods, and trends. J. Biomed. Informatics 74: 20-32 (2017) - [c22]Sam Henry, Bridget T. McInnes:
Semantic Association for Literature Based Discovery. AMIA 2017 - [c21]Amy L. Olex, Alberto Cano, Bridget T. McInnes:
Parsing MetaMap Files in Hadoop. AMIA 2017 - [c20]Bridget T. McInnes, Ted Pedersen:
Improving Correlation with Human Judgments by Integrating Semantic Similarity with Second-Order Vectors. BioNLP 2017: 107-116 - [c19]Sam Henry, Clint Cuffy, Bridget T. McInnes:
Evaluating Feature Extraction Methods for Knowledge-based Biomedical Word Sense Disambiguation. BioNLP 2017: 272-281 - [c18]Bartosz Krawczyk, Bridget T. McInnes, Alberto Cano:
Sentiment Classification from Multi-class Imbalanced Twitter Data Using Binarization. HAIS 2017: 26-37 - [c17]Pulkit Rustgi, Carol J. Fung, Bahman Rashidi, Bridget T. McInnes:
DroidVisor: An Android secure application recommendation system. IM 2017: 1071-1076 - 2016
- [c16]Bridget T. McInnes, Ryan Murphy, Gabrielle N. Jones, Marley Hodson, Tanin Izadi, Ivan Jimenez, Nastassja Lewinski:
Nanomedicine Entity Extraction. AMIA 2016 - [c15]Gerard Briones, Kasun Amarasinghe, Bridget T. McInnes:
VCU-TSA at Semeval-2016 Task 4: Sentiment Analysis in Twitter. SemEval@NAACL-HLT 2016: 215-219 - [c14]Bridget T. McInnes:
VCU at Semeval-2016 Task 14: Evaluating definitional-based similarity measure for semantic taxonomy enrichment. SemEval@NAACL-HLT 2016: 1351-1355 - [i1]Bridget T. McInnes, Ted Pedersen:
Improving Correlation with Human Judgments by Embedding Second Order Vectors with Semantic Similarity. CoRR abs/1609.00559 (2016) - 2015
- [j7]Bridget T. McInnes, Ted Pedersen:
Evaluating semantic similarity and relatedness over the semantic grouping of clinical term pairs. J. Biomed. Informatics 54: 329-336 (2015) - 2014
- [j6]Bridget T. McInnes, Mark Stevenson:
Determining the difficulty of Word Sense Disambiguation. J. Biomed. Informatics 47: 83-90 (2014) - [c13]Bridget T. McInnes, Ted Pedersen, Ying Liu, Genevieve B. Melton, Serguei V. S. Pakhomov:
U-path: An undirected path-based measure of semantic similarity. AMIA 2014 - 2013
- [j5]Bridget T. McInnes, Ted Pedersen:
Evaluating measures of semantic similarity and relatedness to disambiguate terms in biomedical text. J. Biomed. Informatics 46(6): 1116-1124 (2013) - [c12]Bridget T. McInnes, Ted Pedersen, Serguei V. S. Pakhomov, Ying Liu, Genevieve Melton-Meaux:
UMLS: : Similarity: Measuring the Relatedness and Similarity of Biomedical Concepts. HLT-NAACL 2013: 28-31 - 2012
- [j4]Sergey V. Pakhomov, Bridget T. McInnes, J. Lamba, Y. Liu, Genevieve B. Melton, Yogita Ghodke, N. Bhise, V. Lamba, Angela K. Birnbaum:
Using PharmGKB to train text mining approaches for identifying potential gene targets for pharmacogenomic studies. J. Biomed. Informatics 45(5): 862-869 (2012) - [c11]Robert Bill, Ying Liu, Bridget T. McInnes, Genevieve B. Melton, Ted Pedersen, Serguei V. S. Pakhomov:
Evaluating Semantic Relatedness and Similarity Measures with Standardized MedDRA Queries. AMIA 2012 - [c10]Ying Liu, Bridget T. McInnes, Ted Pedersen, Genevieve Melton-Meaux, Serguei V. S. Pakhomov:
Semantic relatedness study using second order co-occurrence vectors computed from biomedical corpora, UMLS and WordNet. IHI 2012: 363-372 - [c9]Ted Pedersen, Serguei V. S. Pakhomov, Bridget T. McInnes, Ying Liu:
Measuring the similarity and relatedness of concepts in the medical domain: IHI 2012 tutorial overview. IHI 2012: 879-880 - 2011
- [j3]Antonio José Jimeno-Yepes, Bridget T. McInnes, Alan R. Aronson:
Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation. BMC Bioinform. 12: 223 (2011) - [j2]Antonio Jimeno-Yepes, Bridget T. McInnes, Alan R. Aronson:
Collocation analysis for UMLS knowledge-based word sense disambiguation. BMC Bioinform. 12(S-3): S4 (2011) - [j1]Serguei V. S. Pakhomov, Ted Pedersen, Bridget T. McInnes, Genevieve B. Melton, Alexander Ruggieri, Christopher G. Chute:
Towards a framework for developing semantic relatedness reference standards. J. Biomed. Informatics 44(2): 251-265 (2011) - [c8]Bridget T. McInnes, Ted Pedersen, Ying Liu, Serguei V. S. Pakhomov, Genevieve B. Melton:
Using Second-order Vectors in a Knowledge-based Method for Acronym Disambiguation. CoNLL 2011: 145-153 - [c7]Ted Pedersen, Satanjeev Banerjee, Bridget T. McInnes, Saiyam Kohli, Mahesh Joshi, Ying Liu:
The Ngram Statistics Package (Text: : NSP) : A Flexible Tool for Identifying Ngrams, Collocations, and Word Associations. MWE@ACL 2011: 131-133 - 2010
- [c6]Genevieve B. Melton, Sungrim Moon, Bridget T. McInnes, Serguei Pakhomov:
Automated Identification of Synonyms in Biomedical Acronym Sense Inventories. Louhi@NAACL-HLT 2010: 46-52
2000 – 2009
- 2009
- [c5]Bridget T. McInnes, Ted Pedersen, Serguei V. S. Pakhomov:
UMLS-Interface and UMLS-Similarity : Open Source Software for Measuring Paths and Semantic Similarity. AMIA 2009 - 2008
- [c4]Bridget T. McInnes:
An Unsupervised Vector Approach to Biomedical Term Disambiguation: Integrating UMLS and Medline. ACL (Student Research Workshop) 2008: 49-54 - 2007
- [c3]Bridget T. McInnes, Ted Pedersen, John Carlis:
Using UMLS Concept Unique Identifiers (CUIs) for Word Sense Disambiguation in the Biomedical Domain. AMIA 2007 - [c2]Bridget T. McInnes, Ted Pedersen, Serguei Pakhomov:
Determining the Syntactic Structure of Medical Terms in Clinical Notes. BioNLP@ACL 2007: 9-16 - 2003
- [c1]Bridget T. McInnes, Ted Pedersen:
The Duluth Word Alignment System. ParallelTexts@NAACL-HLT 2003
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from , , and to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-10 21:17 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint