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ORCIDKim-Anh Lê Cao
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- affiliation: University of Melbourne, Australia
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2020 – today
- 2023
[j23]Yiwen Wang
, Kim-Anh Lê Cao:
PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data. Briefings Bioinform. 24(2) (2023)- [j22]Babak Shaban, Maria Mar del Quiroga, Robert Turnbull, Edoardo Tescari, Kim-Anh Lê Cao, Heroen Verbruggen:
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis. J. Open Source Softw. 8(83): 4851 (2023) - 2022
- [j21]Yidi Deng, Jarny Choi, Kim-Anh Lê Cao:
Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references. Briefings Bioinform. 23(3) (2022) - [j20]Saritha Kodikara, Susan Ellul, Kim-Anh Lê Cao:
Statistical challenges in longitudinal microbiome data analysis. Briefings Bioinform. 23(4) (2022) - [j19]Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Périn, Kim-Anh Lê Cao, Arnaud Droit:
timeOmics: an R package for longitudinal multi-omics data integration. Bioinform. 38(2): 577-579 (2022) - 2021
- [j18]Tyrone Chen, Melcy Philip, Kim-Anh Lê Cao, Sonika Tyagi:
A multi-modal data harmonisation approach for discovery of COVID-19 drug targets. Briefings Bioinform. 22(6) (2021) - [i2]Anne E. Carpenter, Casey S. Greene, Piero Carnici, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley, Kim-Anh Lê Cao, Jerry S. H. Lee, Luigi Marchionni, Suzanne Sindi, Fabian J. Theis, Gregory P. Way, Jean Y. H. Yang, Elana J. Fertig:
A field guide to cultivating computational biology. CoRR abs/2104.11364 (2021) - [i1]Tyrone Chen, Al J. Abadi, Kim-Anh Lê Cao, Sonika Tyagi:
multiomics: A user-friendly multi-omics data harmonisation R pipeline. F1000Research 10: 538 (2021) - 2020
- [j17]Yiwen Wang, Kim-Anh Lê Cao:
Managing batch effects in microbiome data. Briefings Bioinform. 21(6): 1954-1970 (2020) - [j16]Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim-Anh Lê Cao, Jarny Choi, Christine A. Wells:
A simple, scalable approach to building a cross-platform transcriptome atlas. PLoS Comput. Biol. 16(9) (2020)
2010 – 2019
- 2019
- [j15]Amrit Singh, Casey P. Shannon, Benoît Gautier, Florian Rohart, Michaël Vacher, Scott J. Tebbutt, Kim-Anh Lê Cao:
DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays. Bioinform. 35(17): 3055-3062 (2019) - 2017
- [j14]Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén:
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation. Bioinform. 33(12): 1773-1781 (2017) - [j13]Florian Rohart, Aida Eslami, Nicholas Matigian, Stéphanie Bougeard, Kim-Anh Lê Cao:
MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms. BMC Bioinform. 18(1): 128:1-128:13 (2017) - [j12]Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao:
mixOmics: An R package for 'omics feature selection and multiple data integration. PLoS Comput. Biol. 13(11) (2017) - 2015
- [j11]Ralph Patrick, Kim-Anh Lê Cao, Bostjan Kobe, Mikael Bodén:
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events. Bioinform. 31(3): 382-389 (2015) - 2012
- [j10]Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean:
Visualising associations between paired 'omics' data sets. BioData Min. 5: 19 (2012) - [j9]Fangzhou Yao, Jeff Coquery, Kim-Anh Lê Cao:
Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets. BMC Bioinform. 13: 24 (2012) - [j8]Benoit Liquet, Kim-Anh Lê Cao, Hakim Hocini, Rodolphe Thiébaut:
A novel approach for biomarker selection and theintegration of repeated measures experiments from two assays. BMC Bioinform. 13: 325 (2012) - [j7]Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén:
Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Syst. Biol. 6: 60 (2012) - 2011
- [j6]Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén:
Sorting the nuclear proteome. Bioinform. 27(13): 7-14 (2011) - [j5]Kim-Anh Lê Cao, Simon Boitard, Philippe Besse:
Sparse PLS Discriminant Analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC Bioinform. 12: 253 (2011) - 2010
- [j4]Kim-Anh Lê Cao, Emmanuelle Meugnier, Geoffrey J. McLachlan:
Integrative mixture of experts to combine clinical factors and gene markers. Bioinform. 26(9): 1192-1198 (2010)
2000 – 2009
- 2009
- [j3]Kim-Anh Lê Cao, Ignacio González, Sébastien Déjean:
integrOmics: an R package to unravel relationships between two omics datasets. Bioinform. 25(21): 2855-2856 (2009) - [j2]Kim-Anh Lê Cao, Pascal G. P. Martin, Christèle Robert-Granié, Philippe Besse:
Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinform. 10 (2009) - [j1]Kim-Anh Lê Cao, Agnès Bonnet, Sébastien Gadat:
Multiclass classification and gene selection with a stochastic algorithm. Comput. Stat. Data Anal. 53(10): 3601-3615 (2009)
Coauthor Index
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