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2020 – today
- 2023
[j7]Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido:
Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data. BMC Bioinform. 24(1): 420 (2023)
2010 – 2019
- 2015
- [j6]Koki Tsuyuzaki
, Gota Morota, Manabu Ishii, Takeru Nakazato, Satoru Miyazaki, Itoshi Nikaido:
MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis. BMC Bioinform. 16: 45:1-45:17 (2015) - 2013
- [j5]Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: ranking genes and bioresources based on Semantic Web Association Study. Nucleic Acids Res. 41(Webserver-Issue): 109-114 (2013) - [c5]Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. SWAT4LS 2013 - 2011
- [j4]Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda:
The RIKEN integrated database of mammals. Nucleic Acids Res. 39(Database-Issue): 861-870 (2011) - [j3]Norio Kobayashi, Manabu Ishii, Satoshi Takahashi, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda:
Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. Nucleic Acids Res. 39(Web-Server-Issue): 533-540 (2011)
2000 – 2009
- 2009
- [j2]Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda:
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. 37(Web-Server-Issue): 57-62 (2009) - [j1]Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda:
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res. 37(Web-Server-Issue): 147-152 (2009) - 2008
- [c4]Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda:
A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web. SWAT4LS 2008 - 2007
- [c3]Fumikazu Konishi, Manabu Ishii, Shingo Ohki, Ryo Umetsu, Akihiko Konagaya:
RABC: A Conceptual Design of Pervasive Infrastructure for Browser Computing based on Ajax technologies. CCGRID 2007: 661-672 - 2006
- [c2]Fumikazu Konishi, Manabu Ishii, Shingo Ohki, Yusuke Hamano, Shuichi Fukuda, Akihiko Konagaya:
Improving the Research Environment of High Performance Computing for Non-cluster Experts Based on Knoppix Instant Computing Technology. Euro-Par 2006: 1169-1178 - 2005
- [c1]Fumikazu Konishi, Shingo Ohki, Yusuke Hamano, Manabu Ishii:
A case study of instant workbench for InterProScan by Knoppix high throughput computing edition. HPDC 2005: 301-302
Coauthor Index
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