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John A. Stamatoyannopoulos
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2010 – 2019
- 2019
- [j10]Charles E. Breeze
, Alex P. Reynolds, Jenny van Dongen
, Ian Dunham
, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque
, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck:
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data. Bioinform. 35(22): 4767-4769 (2019) - 2016
- [p1]Shane J. Neph, Alex P. Reynolds, Scott Kuehn, John A. Stamatoyannopoulos:
Operating on Genomic Ranges Using BEDOPS. Statistical Genomics 2016: 267-281 - 2015
- [j9]Roadmap Epigenomics Consortium, Anshul Kundaje
, Wouter Meuleman
, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker
, Matthew D. Schultz, Lucas D. Ward
, Abhishek Sarkar
, Gerald T. Quon
, Richard S. Sandstrom
, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang
, Melina Claussnitzer, Yaping Liu
, Cristian Coarfa, R. Alan Harris
, Noam Shoresh, Charles B. Epstein
, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister
, Chibo Hong, Philippe Gascard
, Andrew J. Mungall
, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul
, Peter J. Sabo, Mukul S. Bansal
, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic
, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li
, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray
, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang
, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham
, Susan J. Fisher, David Haussler, Steven J. M. Jones
, Wei Li, Marco A. Marra
, Michael T. McManus
, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker
, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis:
Integrative analysis of 111 reference human epigenomes Open. Nat. 518(7539): 317-330 (2015) - 2014
- [j8]Benjamin D. Pope
, Tyrone Ryba, Vishnu Dileep
, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera
, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder
, John A. Stamatoyannopoulos, James Taylor
, Ross C. Hardison
, Tamer Kahveci, Bing Ren, David M. Gilbert:
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515(7527): 402-405 (2014) - 2013
- [j7]Nisha Rajagopal, Wei Xie, Yan Li, Uli Wagner, Wei Wang, John A. Stamatoyannopoulos, Jason Ernst, Manolis Kellis, Bing Ren:
RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State. PLoS Comput. Biol. 9(3) (2013) - 2012
- [j6]Shane J. Neph, Scott Kuehn, Alex P. Reynolds, Eric Haugen
, Robert E. Thurman, Audra K. Johnson, Eric Rynes, Matthew T. Maurano, Jeff Vierstra
, Sean Thomas, Richard S. Sandstrom
, Richard Humbert, John A. Stamatoyannopoulos:
BEDOPS: high-performance genomic feature operations. Bioinform. 28(14): 1919-1920 (2012)
2000 – 2009
- 2008
- [j5]Heng Lian, William A. Thompson, Robert E. Thurman, John A. Stamatoyannopoulos, William Stafford Noble, Charles E. Lawrence:
Automated mapping of large-scale chromatin structure in ENCODE. Bioinform. 24(17): 1911-1916 (2008) - [j4]Shobhit Gupta, Jonathan H. Dennis, Robert E. Thurman, Robert E. Kingston, John A. Stamatoyannopoulos, William Stafford Noble:
Predicting Human Nucleosome Occupancy from Primary Sequence. PLoS Comput. Biol. 4(8) (2008) - [c3]Robert E. Thurman, William Stafford Noble, John A. Stamatoyannopoulos:
Multi-Scale Correlations in Continuous Genomic Data. Pacific Symposium on Biocomputing 2008: 201-215 - 2007
- [j3]Nathan Day, Andrew Hemmaplardh, Robert E. Thurman, John A. Stamatoyannopoulos, William Stafford Noble:
Unsupervised segmentation of continuous genomic data. Bioinform. 23(11): 1424-1426 (2007) - [j2]Saurabh Asthana, Mikhail A. Roytberg
, John A. Stamatoyannopoulos, Shamil R. Sunyaev:
Analysis of Sequence Conservation at Nucleotide Resolution. PLoS Comput. Biol. 3(12) (2007) - 2006
- [j1]Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble:
Automated Validation of Polymerase Chain Reaction Amplicon Melting Curves. J. Bioinform. Comput. Biol. 4(2): 299-316 (2006) - 2005
- [c2]Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble:
Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves. CSB 2005: 377-385 - [c1]William Stafford Noble, Scott Kuehn, Robert E. Thurman, Man Yu, John A. Stamatoyannopoulos:
Predicting the in vivo signature of human gene regulatory sequence. ISMB (Supplement of Bioinformatics) 2005: 328-343
Coauthor Index
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last updated on 2024-08-05 20:24 CEST by the dblp team
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