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ORCIDRobert G. Beiko
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2020 – today
- 2023
[j19]Brian P. Alcock
, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur:
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51(D1): 690-699 (2023)- 2022
- [j18]Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Jean-Christophe Grenier, Robert G. Beiko, Julie Hussin:
deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes. Bioinform. 38(11): 3051-3061 (2022) - [j17]Miria Bernardino, Robert G. Beiko:
Genome-scale prediction of bacterial promoters. Biosyst. 221: 104771 (2022) - 2021
- [c2]Miria Bernardino, Robert G. Beiko:
Genome-scale prediction of bacterial promoters. CIBCB 2021: 1-8 - 2020
- [j16]Michael A. Peabody, Wing Yin Venus Lau, Gemma Hoad, Baofeng Jia, Finlay Maguire, Kristen L. Gray, Robert G. Beiko, Fiona S. L. Brinkman:
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. Bioinform. 36(10): 3043-3048 (2020) - [j15]Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur:
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res. 48(Database-Issue): D517-D525 (2020)
2010 – 2019
- 2016
- [j14]Chris Whidden, Robert G. Beiko, Norbert Zeh:
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees. Algorithmica 74(3): 1019-1054 (2016) - [j13]Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G. Beiko:
simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes. Bioinform. 32(9): 1380-1387 (2016) - 2014
- [j12]Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, Robert G. Beiko:
STAMP: statistical analysis of taxonomic and functional profiles. Bioinform. 30(21): 3123-3124 (2014) - 2013
- [j11]Michael S. Porter, Robert G. Beiko:
SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles. Bioinform. 29(15): 1858-1864 (2013) - [j10]Chris Whidden, Robert G. Beiko, Norbert Zeh:
Fixed-Parameter Algorithms for Maximum Agreement Forests. SIAM J. Comput. 42(4): 1431-1466 (2013) - [i2]Chris Whidden, Robert G. Beiko, Norbert Zeh:
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees. CoRR abs/1305.0512 (2013) - 2011
- [j9]Donovan H. Parks, Norman J. MacDonald, Robert G. Beiko:
Classifying short genomic fragments from novel lineages using composition and homology. BMC Bioinform. 12: 328 (2011) - [i1]Chris Whidden, Robert G. Beiko, Norbert Zeh:
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests. CoRR abs/1108.2664 (2011) - 2010
- [j8]Donovan H. Parks, Robert G. Beiko:
Identifying biologically relevant differences between metagenomic communities. Bioinform. 26(6): 715-721 (2010) - [j7]Norman J. MacDonald, Robert G. Beiko:
Efficient learning of microbial genotype-phenotype association rules. Bioinform. 26(15): 1834-1840 (2010) - [c1]Chris Whidden, Robert G. Beiko, Norbert Zeh:
Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments. SEA 2010: 141-153
2000 – 2009
- 2009
- [j6]Jacqueline L. Whalley, Stephen Brooks, Robert G. Beiko:
Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree. Bioinform. 25(5): 672-673 (2009) - 2007
- [j5]Robert G. Beiko, Robert L. Charlebois:
A simulation test bed for hypotheses of genome evolution. Bioinform. 23(7): 825-831 (2007) - [j4]Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan:
A two-phase strategy for detecting recombination in nucleotide sequences. South Afr. Comput. J. 38: 20-27 (2007) - 2006
- [j3]Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan:
Detecting recombination in evolving nucleotide sequences. BMC Bioinform. 7: 412 (2006) - 2005
- [j2]Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan:
A word-oriented approach to alignment validation. Bioinform. 21(10): 2230-2239 (2005) - [j1]Robert G. Beiko, Robert L. Charlebois:
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA. BMC Bioinform. 6: 36 (2005)
Coauthor Index
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