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ORCIDAndrzej M. Kierzek
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2010 – 2019
- 2018
[j10]Marek Grabowski, Grzegorz Bokota
, Jacek Sroka, Andrzej M. Kierzek:
Verification of Dynamic Behaviour in Qualitative Molecular Networks Describing Gene Regulation, Signalling and Whole-cell Metabolism. Fundam. Informaticae 160(1-2): 199-219 (2018)- [j9]Kamil Kedzia, Wojtek Ptak, Jacek Sroka, Andrzej M. Kierzek:
Simulation of multicellular populations with Petri nets and genome scale intracellular networks. Sci. Comput. Program. 157: 3-16 (2018) - 2016
- [c1]Wojciech Ptak, Andrzej M. Kierzek, Jacek Sroka:
AB-QSSPN: Integration of Agent-Based Simulation of Cellular Populations with Quasi-Steady State Simulation of Genome Scale Intracellular Networks. Petri Nets 2016: 113-122 - 2013
- [j8]Ciarán P. Fisher, Nicholas J. Plant, J. Bernadette Moore, Andrzej M. Kierzek:
QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells. Bioinform. 29(24): 3181-3190 (2013) - 2012
- [j7]Rebecca B. Hoyle, Daniele Avitabile, Andrzej M. Kierzek:
Equation-Free Analysis of Two-Component System Signalling Model Reveals the Emergence of Co-Existing Phenotypes in the Absence of Multistationarity. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j6]Albert Gevorgyan, Michael E. Bushell, Claudio Avignone-Rossa, Andrzej M. Kierzek:
SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks. Bioinform. 27(3): 433-434 (2011) - [j5]Jacek Sroka, Lukasz Krupa, Andrzej M. Kierzek, Jerzy Tyszkiewicz:
CalcTav - integration of a spreadsheet and Taverna workbench. Bioinform. 27(18): 2618-2619 (2011) - [j4]Jacek Sroka, Lukasz Bieniasz-Krzywiec, Szymon Gwozdz, Dariusz Leniowski, Jakub Lacki, Mateusz Markowski, Claudio Avignone-Rossa, Michael E. Bushell, Johnjoe McFadden, Andrzej M. Kierzek:
Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface. BMC Bioinform. 12: 196 (2011) - [j3]Bhushan K. Bonde, Dany J. V. Beste, Emma Laing, Andrzej M. Kierzek, Johnjoe McFadden:
Differential Producibility Analysis (DPA) of Transcriptomic Data with Metabolic Networks: Deconstructing the Metabolic Response of M. tuberculosis. PLoS Comput. Biol. 7(6) (2011)
2000 – 2009
- 2006
- [j2]Jacek Sroka, Grzegorz Kaczor, Jerzy Tyszkiewicz, Andrzej M. Kierzek:
XQTav: an XQuery processor for Taverna environment. Bioinform. 22(10): 1280-1281 (2006) - 2002
- [j1]Andrzej M. Kierzek:
STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm. Bioinform. 18(3): 470-481 (2002)
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