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2020 – today
- 2024
[j59]Majid Afshar
, Yanjun Gao, Deepak Gupta, Emma Croxford, Dina Demner-Fushman:
On the role of the UMLS in supporting diagnosis generation proposed by Large Language Models. J. Biomed. Informatics 157: 104707 (2024)- [c171]Deepak Gupta, Dina Demner-Fushman:
Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking. AIME (1) 2024: 251-260 - [c170]Brian D. Ondov, Dina Demner-Fushman:
Sentence-Aligned Simplification of Biomedical Abstracts. AIME (1) 2024: 322-333 - [c169]Deepak Gupta, Kush Attal, Dina Demner-Fushman:
Towards Answering Health-related Questions from Medical Videos: Datasets and Approaches. LREC/COLING 2024: 16399-16411 - [c168]Brian D. Ondov, Kush Attal, Dina Demner-Fushman:
Pedagogically Aligned Objectives Create Reliable Automatic Cloze Tests. NAACL-HLT 2024: 3961-3972 - [e19]Dina Demner-Fushman, Sophia Ananiadou, Makoto Miwa, Kirk Roberts, Junichi Tsujii:
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2024, Bangkok, Thailand, August 16, 2024. Association for Computational Linguistics 2024, ISBN 979-8-89176-130-8 [contents] - 2023
- [j58]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. J. Assoc. Inf. Sci. Technol. 74(2): 205-218 (2023) - [j57]Deepak Gupta, Russell F. Loane, Soumya Gayen, Dina Demner-Fushman:
Medical image retrieval via nearest neighbor search on pre-trained image features. Knowl. Based Syst. 278: 110907 (2023) - [e18]Dina Demner-Fushman, Sophia Ananiadou, Kevin Cohen:
The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023. Association for Computational Linguistics 2023 [contents] - [i20]Deepak Gupta, Dina Demner-Fushman:
Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking. CoRR abs/2305.04344 (2023) - [i19]Deepak Gupta, Kush Attal, Dina Demner-Fushman:
Towards Answering Health-related Questions from Medical Videos: Datasets and Approaches. CoRR abs/2309.12224 (2023) - 2022
- [j56]Brian D. Ondov, Kush Attal, Dina Demner-Fushman:
A survey of automated methods for biomedical text simplification. J. Am. Medical Informatics Assoc. 29(11): 1976-1988 (2022) - [j55]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Question-aware transformer models for consumer health question summarization. J. Biomed. Informatics 128: 104040 (2022) - [c167]Deepak Gupta, Dina Demner-Fushman:
Overview of the MedVidQA 2022 Shared Task on Medical Video Question-Answering. BioNLP@ACL 2022: 264-274 - [c166]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, Steven Bedrick, William R. Hersh:
Overview of the TREC 2022 Clinical Trials Track. TREC 2022 - [e17]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 21st Workshop on Biomedical Language Processing, BioNLP@ACL 2022, Dublin, Ireland, May 26, 2022. Association for Computational Linguistics 2022, ISBN 978-1-955917-27-8 [contents] - [i18]Deepak Gupta, Kush Attal, Dina Demner-Fushman:
A Dataset for Medical Instructional Video Classification and Question Answering. CoRR abs/2201.12888 (2022) - [i17]Shweta Yadav, Deepak Gupta, Dina Demner-Fushman:
CHQ-Summ: A Dataset for Consumer Healthcare Question Summarization. CoRR abs/2206.06581 (2022) - [i16]Travis R. Goodwin, Dina Demner-Fushman:
Clinical Language Understanding Evaluation (CLUE). CoRR abs/2209.14377 (2022) - [i15]Deepak Gupta, Russell F. Loane, Soumya Gayen, Dina Demner-Fushman:
Medical Image Retrieval via Nearest Neighbor Search on Pre-trained Image Features. CoRR abs/2210.02401 (2022) - [i14]Kush Attal, Brian D. Ondov, Dina Demner-Fushman:
A Dataset for Plain Language Adaptation of Biomedical Abstracts. CoRR abs/2210.12242 (2022) - 2021
- [j54]Mourad Sarrouti, Asma Ben Abacha, Dina Demner-Fushman:
Goal-Driven Visual Question Generation from Radiology Images. Inf. 12(8): 334 (2021) - [j53]Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh:
Searching for scientific evidence in a pandemic: An overview of TREC-COVID. J. Biomed. Informatics 121: 103865 (2021) - [c165]Dina Demner-Fushman, Willie J. Rogers, James G. Mork:
Automatic recognition of figurative language in biomedical articles. SDU@AAAI 2021 - [c164]Willie Rogers, Alastair R. Rae, Dina Demner-Fushman:
AI-NLM exploration of the Acronym Identification Shared Task at SDU@AAAI-21. SDU@AAAI 2021 - [c163]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards. ACL/IJCNLP (2) 2021: 249-255 - [c162]Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman:
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA 2021 - [c161]Asma Ben Abacha, Yassine Mrabet, Yuhao Zhang, Chaitanya Shivade, Curtis P. Langlotz, Dina Demner-Fushman:
Overview of the MEDIQA 2021 Shared Task on Summarization in the Medical Domain. BioNLP@NAACL-HLT 2021: 74-85 - [c160]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
A Neural Text Ranking Approach for Automatic MeSH Indexing. CLEF (Working Notes) 2021: 302-312 - [c159]Mourad Sarrouti, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
NLM at BioASQ Synergy 2021: Deep Learning-based Methods for Biomedical Semantic Question Answering about COVID-19. CLEF (Working Notes) 2021: 335-350 - [c158]Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Mourad Sarrouti, Dina Demner-Fushman, Sadid A. Hasan, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Vassili Kovalev, Obioma Pelka, Alba García Seco de Herrera, Janadhip Jacutprakart, Christoph M. Friedrich, Raul Berari, Andrei Tauteanu, Dimitri Fichou, Paul Brie, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Jon Chamberlain, Antonio Campello, Adrian F. Clark, Thomas Oliver, Hassan Moustahfid, Adrian Popescu, Jerome Deshayes-Chossart:
Overview of the ImageCLEF 2021: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications. CLEF 2021: 345-370 - [c157]Asma Ben Abacha, Mourad Sarrouti, Dina Demner-Fushman, Sadid A. Hasan, Henning Müller:
Overview of the VQA-Med Task at ImageCLEF 2021: Visual Question Answering and Generation in the Medical Domain. CLEF (Working Notes) 2021: 1081-1088 - [c156]Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Dina Demner-Fushman, Sadid A. Hasan, Mourad Sarrouti, Obioma Pelka, Christoph M. Friedrich, Alba Garcia Seco de Herrera, Janadhip Jacutprakart, Vassili Kovalev, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Hassan Moustahfid, Thomas Oliver, Abigail Schulz, Paul Brie, Raul Berari, Dimitri Fichou, Andrei Tauteanu, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Jérôme Deshayes, Adrian Popescu:
The 2021 ImageCLEF Benchmark: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications. ECIR (2) 2021: 616-623 - [c155]Mourad Sarrouti, Asma Ben Abacha, Yassine Mrabet, Dina Demner-Fushman:
Evidence-based Fact-Checking of Health-related Claims. EMNLP (Findings) 2021: 3499-3512 - [c154]Mourad Sarrouti, Asma Ben Abacha, Dina Demner-Fushman:
Multi-Task Transfer Learning with Data Augmentation for Recognizing Question Entailment in the Medical Domain. ICHI 2021: 339-346 - [e16]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-40-4 [contents] - [i13]Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh:
Searching for Scientific Evidence in a Pandemic: An Overview of TREC-COVID. CoRR abs/2104.09632 (2021) - [i12]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Question-aware Transformer Models for Consumer Health Question Summarization. CoRR abs/2106.00219 (2021) - [i11]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards. CoRR abs/2107.00176 (2021) - 2020
- [j52]Dina Demner-Fushman, Yassine Mrabet, Asma Ben Abacha:
Consumer health information and question answering: helping consumers find answers to their health-related information needs. J. Am. Medical Informatics Assoc. 27(2): 194-201 (2020) - [j51]Travis R. Goodwin, Dina Demner-Fushman:
A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision. J. Am. Medical Informatics Assoc. 27(4): 567-576 (2020) - [j50]Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh:
TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19. J. Am. Medical Informatics Assoc. 27(9): 1431-1436 (2020) - [j49]Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts:
Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning. J. Biomed. Informatics 108: 103473 (2020) - [j48]Ellen M. Voorhees, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, William R. Hersh, Kyle Lo, Kirk Roberts, Ian Soboroff, Lucy Lu Wang:
TREC-COVID: constructing a pandemic information retrieval test collection. SIGIR Forum 54(1): 1:1-1:12 (2020) - [c153]Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman:
Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. AMIA 2020 - [c152]Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Dina Demner-Fushman, Henning Müller:
Overview of the VQA-Med Task at ImageCLEF 2020: Visual Question Answering and Generation in the Medical Domain. CLEF (Working Notes) 2020 - [c151]Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Dina Demner-Fushman, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Vassili Kovalev, Obioma Pelka, Christoph M. Friedrich, Alba García Seco de Herrera, Van-Tu Ninh, Tu-Khiem Le, Liting Zhou, Luca Piras, Michael Riegler, Pål Halvorsen, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Duc-Tien Dang-Nguyen, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Dimitri Fichou, Raul Berari, Paul Brie, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin:
Overview of the ImageCLEF 2020: Multimedia Retrieval in Medical, Lifelogging, Nature, and Internet Applications. CLEF 2020: 311-341 - [c150]Travis R. Goodwin, Max E. Savery, Dina Demner-Fushman:
Flight of the PEGASUS? Comparing Transformers on Few-shot and Zero-shot Multi-document Abstractive Summarization. COLING 2020: 5640-5646 - [c149]Yassine Mrabet, Dina Demner-Fushman:
HOLMS: Alternative Summary Evaluation with Large Language Models. COLING 2020: 5679-5688 - [c148]Bogdan Ionescu, Henning Müller, Renaud Péteri, Duc-Tien Dang-Nguyen, Liting Zhou, Luca Piras, Michael Riegler, Pål Halvorsen, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Alba Garcia Seco de Herrera, Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Joey Liu, Dina Demner-Fushman, Obioma Pelka, Christoph M. Friedrich, Yashin Dicente Cid, Serge Kozlovski, Vitali Liauchuk, Vassili Kovalev, Raul Berari, Paul Brie, Dimitri Fichou, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin:
ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. ECIR (2) 2020: 533-541 - [c147]Travis R. Goodwin, Max E. Savery, Dina Demner-Fushman:
Towards Zero Shot Conditional Summarization with Adaptive Multi-task Fine-Tuning. EMNLP (Findings) 2020: 3215-3226 - [c146]Yassine Mrabet, Mourad Sarrouti, Asma Ben Abacha, Soumya Gayen, Travis R. Goodwin, Alastair R. Rae, Willie Rogers, Dina Demner-Fushman:
NLM at TREC 2020 Health Misinformation and Deep Learning Tracks. TREC 2020 - [c145]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, Steven Bedrick, William R. Hersh:
Overview of the TREC 2020 Precision Medicine Track. TREC 2020 - [e15]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-09-5 [contents] - [i10]Ellen M. Voorhees, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, William R. Hersh, Kyle Lo, Kirk Roberts, Ian Soboroff, Lucy Lu Wang:
TREC-COVID: Constructing a Pandemic Information Retrieval Test Collection. CoRR abs/2005.04474 (2020) - [i9]Max E. Savery, Asma Ben Abacha, Soumya Gayen, Dina Demner-Fushman:
Question-Driven Summarization of Answers to Consumer Health Questions. CoRR abs/2005.09067 (2020)
2010 – 2019
- 2019
- [j47]Asma Ben Abacha, Dina Demner-Fushman:
A question-entailment approach to question answering. BMC Bioinform. 20(1): 511:1-511:23 (2019) - [j46]Chris J. Lu, Alan R. Aronson, Sonya E. Shooshan, Dina Demner-Fushman:
Spell checker for consumer language (CSpell). J. Am. Medical Informatics Assoc. 26(3): 211-218 (2019) - [c144]Asma Ben Abacha, Dina Demner-Fushman:
On the Summarization of Consumer Health Questions. ACL (1) 2019: 2228-2234 - [c143]Travis R. Goodwin, Dina Demner-Fushman:
Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients. AMIA 2019 - [c142]Chris J. Lu, Amanda Payne, Dina Demner-Fushman:
Classification Types: A New Feature in the SPECIALIST Lexicon. AMIA 2019 - [c141]Yuqing Mao, Kin Wah Fung, Dina Demner-Fushman:
Drug-drug Interaction Extraction via Transfer Learning. AMIA 2019 - [c140]Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman:
A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA 2019 - [c139]Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman:
Evaluation of System for Selective Indexing Classification. AMIA 2019 - [c138]Asma Ben Abacha, Chaitanya Shivade, Dina Demner-Fushman:
Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. BioNLP@ACL 2019: 370-379 - [c137]Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Henning Müller:
VQA-Med: Overview of the Medical Visual Question Answering Task at ImageCLEF 2019. CLEF (Working Notes) 2019 - [c136]Bogdan Ionescu, Henning Müller, Renaud Péteri, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Dzmitri Klimuk, Aleh Tarasau, Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Obioma Pelka, Christoph M. Friedrich, Alba Garcia Seco de Herrera, Narciso García, Ergina Kavallieratou, Carlos Roberto del-Blanco, Carlos Cuevas, Nikos Vasilopoulos, Konstantinos Karampidis, Jon Chamberlain, Adrian F. Clark, Antonio Campello:
ImageCLEF 2019: Multimedia Retrieval in Medicine, Lifelogging, Security and Nature. CLEF 2019: 358-386 - [c135]Bogdan Ionescu, Henning Müller, Renaud Péteri, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Obioma Pelka, Christoph M. Friedrich, Jon Chamberlain, Adrian F. Clark, Alba Garcia Seco de Herrera, Narciso García, Ergina Kavallieratou, Carlos Roberto del-Blanco, Carlos Cuevas, Nikos Vasilopoulos, Konstantinos Karampidis:
ImageCLEF 2019: Multimedia Retrieval in Lifelogging, Medical, Nature, and Security Applications. ECIR (2) 2019: 301-308 - [c134]Asma Ben Abacha, Yassine Mrabet, Mark Sharp, Travis R. Goodwin, Sonya E. Shooshan, Dina Demner-Fushman:
Bridging the Gap Between Consumers' Medication Questions and Trusted Answers. MedInfo 2019: 25-29 - [c133]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
Convolutional Neural Network for Automatic MeSH Indexing. PKDD/ECML Workshops (2) 2019: 581-594 - [c132]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant, Funda Meric-Bernstam:
Overview of the TREC 2019 Precision Medicine Track. TREC 2019 - [e14]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-28-4 [contents] - [i8]Yassine Mrabet, Dina Demner-Fushman:
On Agreements in Visual Understanding. ViGIL@NeurIPS 2019 - [i7]Travis R. Goodwin, Dina Demner-Fushman, Kin Wah Fung, Phong Do:
Overview of the TAC 2019 Track on Drug-Drug Interaction Extraction from Drug Labels. TAC 2019 - [i6]Asma Ben Abacha, Dina Demner-Fushman:
A Question-Entailment Approach to Question Answering. CoRR abs/1901.08079 (2019) - [i5]Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts:
Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. CoRR abs/1908.04485 (2019) - [i4]Travis R. Goodwin, Dina Demner-Fushman:
Bridging the Knowledge Gap: Enhancing Question Answering with World and Domain Knowledge. CoRR abs/1910.07429 (2019) - 2018
- [j45]Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Sonya E. Shooshan, Laritza Rodriguez, Kate Masterton, Dina Demner-Fushman:
Semantic annotation of consumer health questions. BMC Bioinform. 19(1): 34:1-34:28 (2018) - [c131]Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson:
Finding medication doses in the literature. AMIA 2018 - [c130]Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts:
Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). AMIA 2018 - [c129]François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA 2018 - [c128]Chris J. Lu, Dina Demner-Fushman:
Improving Spelling Correction with Consumer Health Terminology. AMIA 2018 - [c127]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant:
Benchmarking Information Retrieval for Precision Oncology: the TREC Precision Medicine Track. AMIA 2018 - [c126]Asma Ben Abacha, Soumya Gayen, Jason J. Lau, Sivaramakrishnan Rajaraman, Dina Demner-Fushman:
NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. CLEF (Working Notes) 2018 - [c125]Dina Demner-Fushman:
Clinical, Consumer Health, and Visual Question Answering. SIMBig 2018: 1-6 - [c124]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar:
Overview of the TREC 2018 Precision Medicine Track. TREC 2018 - [e13]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-33-9 [contents] - [i3]Dina Demner-Fushman, Kin Wah Fung, Phong Do, Richard D. Boyce, Travis R. Goodwin:
Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. TAC 2018 - 2017
- [j44]Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax061 (2017) - [j43]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu:
Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax068 (2017) - [j42]James G. Mork, Alan R. Aronson, Dina Demner-Fushman:
12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. 8(1): 8:1-8:10 (2017) - [j41]Kevin Zhang, Dina Demner-Fushman:
Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations. J. Am. Medical Informatics Assoc. 24(4): 781-787 (2017) - [j40]Dina Demner-Fushman, Willie J. Rogers, Alan R. Aronson:
MetaMap Lite: an evaluation of a new Java implementation of MetaMap. J. Am. Medical Informatics Assoc. 24(4): 841-844 (2017) - [j39]Ariel Deardorff, Kate Masterton, Kirk Roberts, Halil Kilicoglu, Dina Demner-Fushman:
A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. J. Assoc. Inf. Sci. Technol. 68(7): 1724-1736 (2017) - [c123]Yassine Mrabet, Halil Kilicoglu, Dina Demner-Fushman:
TextFlow: A Text Similarity Measure based on Continuous Sequences. ACL (1) 2017: 763-772 - [c122]Dina Demner-Fushman, Willie J. Rogers:
CTB: A Custom Taxonomy Builder for Named Entity Extraction. AMIA 2017 - [c121]Tracy Edinger, Dina Demner-Fushman, Aaron M. Cohen, Steven Bedrick, William R. Hersh:
Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. AMIA 2017 - [c120]François-Michel Lang, Dina Demner-Fushman:
New MetaMap Features for Processing Numerical Tables. AMIA 2017 - [c119]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA 2017 - [c118]Laritza M. Rodriguez, Stephanie M. Morrison, Kathleen Greenberg, Dina Demner-Fushman:
Mining the literature for genes associated with placenta-mediated maternal diseases. AMIA 2017 - [c117]Asma Ben Abacha, Alba Garcia Seco de Herrera, Ke Wang, L. Rodney Long, Sameer K. Antani, Dina Demner-Fushman:
Named entity recognition in functional neuroimaging literature. BIBM 2017: 2218-2220 - [c116]Asma Ben Abacha, Alba Garcia Seco de Herrera, Soumya Gayen, Dina Demner-Fushman, Sameer K. Antani:
NLM at ImageCLEF 2017 Caption Task. CLEF (Working Notes) 2017 - [c115]Asma Ben Abacha, Dina Demner-Fushman:
NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. SemEval@ACL 2017: 349-352 - [c114]Asma Ben Abacha, Eugene Agichtein, Yuval Pinter, Dina Demner-Fushman:
Overview of the Medical Question Answering Task at TREC 2017 LiveQA. TREC 2017 - [c113]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant:
Overview of the TREC 2017 Precision Medicine Track. TREC 2017 - [e12]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii:
BioNLP 2017, Vancouver, Canada, August 4, 2017. Association for Computational Linguistics 2017, ISBN 978-1-945626-59-3 [contents] - [i2]Kirk Roberts, Dina Demner-Fushman, Joseph M. Tonning:
Overview of the TAC 2017 Adverse Reaction Extraction from Drug Labels Track. TAC 2017 - 2016
- [j38]Asma Ben Abacha, Dina Demner-Fushman:
Meta-Learning with Selective Data Augmentation for Medical Entity Recognition. Int. J. Comput. Linguistics Appl. 7(2): 167-182 (2016) - [j37]Kirk Roberts, Matthew S. Simpson, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh:
State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track. Inf. Retr. J. 19(1-2): 113-148 (2016) - [j36]Dina Demner-Fushman, Marc D. Kohli, Marc B. Rosenman, Sonya E. Shooshan, Laritza Rodriguez, Sameer K. Antani, George R. Thoma, Clement J. McDonald:
Preparing a collection of radiology examinations for distribution and retrieval. J. Am. Medical Informatics Assoc. 23(2): 304-310 (2016) - [j35]Kirk Roberts, Dina Demner-Fushman:
Interactive use of online health resources: a comparison of consumer and professional questions. J. Am. Medical Informatics Assoc. 23(4): 802-811 (2016) - [c112]Yassine Mrabet, Pavlos Vougiouklis, Halil Kilicoglu, Claire Gardent, Dina Demner-Fushman, Jonathon S. Hare, Elena Simperl:
Aligning Texts and Knowledge Bases with Semantic Sentence Simplification. WebNLG 2016: 29-36 - [c111]Asma Ben Abacha, Dina Demner-Fushman:
Recognizing Question Entailment for Medical Question Answering. AMIA 2016 - [c110]Stéphane M. Meystre, Hongfang Liu, Rong Xu,