![](https://dblp.org/img/logo.ua.320x120.png)
![](https://dblp.org/img/dropdown.dark.16x16.png)
![](https://dblp.org/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.org/img/search.dark.16x16.png)
![search dblp](https://dblp.org/img/search.dark.16x16.png)
default search action
Amedeo Caflisch
Person information
Refine list
![note](https://dblp.org/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
- [j27]Ioana M. Ilie, Claus Ehrhardt, Amedeo Caflisch
, Gabriele Weitz-Schmidt:
Decrypting Integrins by Mixed-Solvent Molecular Dynamics Simulations. J. Chem. Inf. Model. 63(12): 3878-3891 (2023) - [j26]Raitis Bobrovs
, Laura Drunka, Iveta Kanepe, Aigars Jirgensons
, Amedeo Caflisch
, Matteo Salvalaglio
, Kristaps Jaudzems
:
Exploring the Binding Pathway of Novel Nonpeptidomimetic Plasmepsin V Inhibitors. J. Chem. Inf. Model. 63(21): 6890-6899 (2023) - 2022
- [j25]Ilaria Salutari
, Amedeo Caflisch
:
Dynamics of the Histone Acetyltransferase Lysine-Rich Loop in the Catalytic Core of the CREB-Binding Protein. J. Chem. Inf. Model. 62(4): 1014-1024 (2022) - 2020
- [j24]Kenneth Goossens
, Berthold Wroblowski
, Cassiano Langini
, Herman van Vlijmen
, Amedeo Caflisch
, Hans De Winter
:
Assessment of the Fragment Docking Program SEED. J. Chem. Inf. Model. 60(10): 4881-4893 (2020) - [j23]Jean-Rémy Marchand
, Tim Knehans, Amedeo Caflisch
, Andreas Vitalis
:
An ABSINTH-Based Protocol for Predicting Binding Affinities between Proteins and Small Molecules. J. Chem. Inf. Model. 60(10): 5188-5202 (2020) - [j22]Yaozong Li
, Rajiv K. Bedi, Elena V. Moroz-Omori
, Amedeo Caflisch
:
Structural and Dynamic Insights into Redundant Function of YTHDF Proteins. J. Chem. Inf. Model. 60(12): 5932-5935 (2020)
2010 – 2019
- 2018
- [j21]Carmen Esposito
, L. Wiedmer, Amedeo Caflisch
:
In Silico Identification of JMJD3 Demethylase Inhibitors. J. Chem. Inf. Model. 58(10): 2151-2163 (2018) - 2017
- [j20]Jean-Rémy Marchand
, Andrea Dalle Vedove
, Graziano Lolli
, Amedeo Caflisch
:
Discovery of Inhibitors of Four Bromodomains by Fragment-Anchored Ligand Docking. J. Chem. Inf. Model. 57(10): 2584-2597 (2017) - 2014
- [j19]Biao Fu, Aleksandr B. Sahakyan
, Carlo Camilloni
, Gian Gaetano Tartaglia
, Emanuele Paci
, Amedeo Caflisch, Michele Vendruscolo
, Andrea Cavalli
:
ALMOST: An all atom molecular simulation toolkit for protein structure determination. J. Comput. Chem. 35(14): 1101-1105 (2014) - [j18]Yuri Pevzner, Emilie Frugier, Vinushka Schalk, Amedeo Caflisch, H. Lee Woodcock III:
Fragment-Based Docking: Development of the CHARMMing Web User Interface as a Platform for Computer-Aided Drug Design. J. Chem. Inf. Model. 54(9): 2612-2620 (2014) - 2013
- [j17]Nicolas Blöchliger, Andreas Vitalis, Amedeo Caflisch:
A scalable algorithm to order and annotate continuous observations reveals the metastable states visited by dynamical systems. Comput. Phys. Commun. 184(11): 2446-2453 (2013) - 2011
- [j16]Michele Seeber
, Angelo Felline, Francesco Raimondi, Stefanie Muff
, Ran Friedman, Francesco Rao, Amedeo Caflisch, Francesca Fanelli
:
Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces. J. Comput. Chem. 32(6): 1183-1194 (2011) - [j15]Danzhi Huang, Amedeo Caflisch:
The Free Energy Landscape of Small Molecule Unbinding. PLoS Comput. Biol. 7(2) (2011) - 2010
- [j14]Danzhi Huang, Ting Zhou, Karine Lafleur, Cristina Nevado, Amedeo Caflisch:
Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis. Bioinform. 26(2): 198-204 (2010)
2000 – 2009
- 2009
- [j13]Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson
, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels
, Stefan Boresch
, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, Victor Ovchinnikov, Emanuele Paci
, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York
, Martin Karplus:
CHARMM: The biomolecular simulation program. J. Comput. Chem. 30(10): 1545-1614 (2009) - [j12]Ting Zhou, Amedeo Caflisch:
Data Management System for Distributed Virtual Screening. J. Chem. Inf. Model. 49(1): 145-152 (2009) - 2008
- [j11]Urs Haberthür, Amedeo Caflisch:
FACTS: Fast analytical continuum treatment of solvation. J. Comput. Chem. 29(5): 701-715 (2008) - [j10]Fabian Dey, Amedeo Caflisch:
Fragment-Based de Novo Ligand Design by Multiobjective Evolutionary Optimization. J. Chem. Inf. Model. 48(3): 679-690 (2008) - [i2]Philipp Schuetz, Amedeo Caflisch:
Multistep greedy algorithm identifies community structure in real-world and computer-generated networks. CoRR abs/0809.4398 (2008) - 2007
- [j9]Michele Seeber
, Marco Cecchini
, Francesco Rao, Giovanni Settanni
, Amedeo Caflisch:
Wordom: a program for efficient analysis of molecular dynamics simulations. Bioinform. 23(19): 2625-2627 (2007) - [i1]Philipp Schuetz, Amedeo Caflisch:
Efficient Modularity Optimization: Multi-Step Greedy Algorithm and Vertex Mover Refinement. CoRR abs/0712.1163 (2007) - 2004
- [j8]Marco Cecchini
, Peter Kolb
, Nicolas Majeux, Amedeo Caflisch:
Automated docking of highly flexible ligands by genetic algorithms: A critical assessment. J. Comput. Chem. 25(3): 412-422 (2004) - 2003
- [j7]Urs Haberthür, Nicolas Majeux, Philipp Werner, Amedeo Caflisch:
Efficient evaluation of the effective dielectric function of a macromolecule in aqueous solution. J. Comput. Chem. 24(15): 1936-1949 (2003) - [c2]Bennet Uk, Michela Taufer
, Thomas Stricker, Giovanni Settanni
, Andrea Cavalli, Amedeo Caflisch:
Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform. CCGRID 2003: 240-247 - 2002
- [c1]Michela Taufer
, Egon Perathoner, Andrea Cavalli, Amedeo Caflisch, Thomas Stricker:
Performance Characterization of a Molecular Dynamics Code on PC Clusters: Is There Any Easy Parallelism in CHARMM?. IPDPS 2002 - 2001
- [j6]Nicolas Budin, Nicolas Majeux, Catherine Tenette-Souaille, Amedeo Caflisch:
Structure-based ligand design by a build-up approach and genetic algorithm search in conformational space. J. Comput. Chem. 22(16): 1956-1970 (2001) - 2000
- [j5]Amedeo Caflisch, Hans J. Schramm, Martin Karplus:
Design of dimerization inhibitors of HIV-1 aspartic proteinase: A computer-based combinatorial approach. J. Comput. Aided Mol. Des. 14(2): 161-179 (2000)
1990 – 1999
- 1999
- [j4]Marco Scarsi, Amedeo Caflisch:
Comment on the validation of continuum electrostatics models. J. Comput. Chem. 20(14): 1533-1536 (1999) - 1998
- [j3]Joannis Apostolakis, Andreas Plückthun, Amedeo Caflisch:
Docking small ligands in flexible binding sites. J. Comput. Chem. 19(1): 21-37 (1998) - 1997
- [j2]Amedeo Caflisch, Stefan Fischer, Martin Karplus:
Docking by Monte Carlo minimization with a solvation correction: Application to an FKBP - substrate complex. J. Comput. Chem. 18(6): 723-743 (1997) - 1996
- [j1]Amedeo Caflisch:
Computational combinatorial ligand design: Application to human alpha-thrombin. J. Comput. Aided Mol. Des. 10(5): 372-396 (1996)
Coauthor Index
![](https://dblp.org/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-08-05 20:21 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint