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2020 – today
- 2024
[j10]Kui Qian, Beth Friedman
, Jun Takatoh, Alexander Groisman, Fan Wang, David Kleinfeld, Yoav Freund:
CellBoost: A pipeline for machine assisted annotation in neuroanatomy. AI Open 5: 142-154 (2024)- [c3]Kui Qian, Litao Qiao, Beth Friedman, Edward O'Donnell, David Kleinfeld, Yoav Freund:
Towards Explainable Automated Neuroanatomy. MICCAI (3) 2024: 477-486 - [i3]Kui Qian, Litao Qiao, Beth Friedman, Edward O'Donnell, David Kleinfeld, Yoav Freund:
Towards Explainable Automated Neuroanatomy. CoRR abs/2404.05814 (2024) - 2021
- [j9]Patricia Pais-Roldán, Celine Mateo, Wen-Ju Pan, Benjamin T. Acland, David Kleinfeld, Lawrence H. Snyder, Xin Yu, Shella D. Keilholz:
Contribution of animal models toward understanding resting state functional connectivity. NeuroImage 245: 118630 (2021) - [j8]Grant Hartung, Shoale Badr, Mohammad Moeini, Frédéric Lesage, David Kleinfeld, Ali Alaraj, Andreas A. Linninger:
Voxelized simulation of cerebral oxygen perfusion elucidates hypoxia in aged mouse cortex. PLoS Comput. Biol. 17(1) (2021)
2010 – 2019
- 2018
- [j7]Lia Papadopoulos, Pablo Blinder, Henrik Ronellenfitsch, Florian Klimm, Eleni Katifori, David Kleinfeld, Danielle S. Bassett:
Comparing two classes of biological distribution systems using network analysis. PLoS Comput. Biol. 14(9) (2018) - [j6]Grant Hartung, Claudia Vesel, Ryan Morley, Ali Alaraj, John G. Sled, David Kleinfeld, Andreas A. Linninger:
Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex. PLoS Comput. Biol. 14(11) (2018) - [i2]Yuncong Chen, David Kleinfeld, Martyn Goulding, Yoav Freund:
Robust Landmark Detection for Alignment of Mouse Brain Section Images. CoRR abs/1803.03420 (2018) - 2017
- [j5]Mario Gilberto Báez-Yánez, Philipp Ehses, Christian C. Mirkes, Philbert S. Tsai, David Kleinfeld, Klaus Scheffler:
The impact of vessel size, orientation and intravascular contribution on the neurovascular fingerprint of BOLD bSSFP fMRI. NeuroImage 163: 13-23 (2017) - [j4]Franca Schmid, Philbert S. Tsai, David Kleinfeld, Patrick Jenny, Bruno Weber:
Depth-dependent flow and pressure characteristics in cortical microvascular networks. PLoS Comput. Biol. 13(2) (2017) - [c2]Yuncong Chen, Lauren McElvain, Alex Tolpygo, Daniel Ferrante, Harvey J. Karten, Partha P. Mitra, David Kleinfeld, Yoav Freund:
The Active Atlas: Combining 3D Anatomical Models with Texture Detectors. MICCAI (1) 2017: 3-11 - [i1]Yuncong Chen, David Kleinfeld, Yoav Freund:
The Active Atlas: Combining 3D Anatomical Models with Texture Detectors. CoRR abs/1702.08606 (2017) - 2012
- [j3]John P. Kaufhold, Philbert Tsai, Pablo Blinder, David Kleinfeld:
Vectorization of optically sectioned brain microvasculature: Learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments. Medical Image Anal. 16(6): 1241-1258 (2012) - 2010
- [j2]Patrick J. Drew, Pablo Blinder, Gert Cauwenberghs, Andy Y. Shih, David Kleinfeld:
Rapid determination of particle velocity from space-time images using the Radon transform. J. Comput. Neurosci. 29(1-2): 5-11 (2010)
2000 – 2009
- 2009
- [j1]Jason W. Bohland, Caizhi Wu, Helen Barbas, Hemant Bokil, Mihail Bota, Hans C. Breiter, Hollis T. Cline, John C. Doyle, Peter J. Freed, Ralph J. Greenspan, Suzanne N. Haber, Michael Hawrylycz, Daniel G. Herrera, Claus C. Hilgetag, Z. Josh Huang, Allan Jones, Edward G. Jones, Harvey J. Karten, David Kleinfeld, Rolf Kötter, Henry A. Lester, John M. Lin, Brett D. Mensh, Shawn Mikula, Jaak Panksepp, Joseph L. Price, Joseph Safdieh, Clifford B. Saper, Nicholas D. Schiff, Jeremy D. Schmahmann, Bruce W. Stillman, Karel Svoboda, Larry W. Swanson, Arthur W. Toga, David C. Van Essen, James D. Watson, Partha P. Mitra:
A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale. PLoS Comput. Biol. 5(3) (2009) - 2008
- [p1]Cengiz Günay, Tomasz G. Smolinski, William W. Lytton, Thomas M. Morse, Padraig Gleeson, Sharon M. Crook, Volker Steuber, Angus Silver, Horatiu Voicu, Peter Andrews, Hemant Bokil, Hiren Maniar, Catherine Loader, Samar Mehta, David Kleinfeld, David J. Thomson, Partha P. Mitra, Gloster Aaron, Jean-Marc Fellous:
Computational Intelligence in Electrophysiology: Trends and Open Problems. Applications of Computational Intelligence in Biology 2008: 325-359 - 2004
- [c1]Agustin Ifarraguerri, Beverly Thompson, Philbert Tsai, Beth Friedman, Chris Schaffer, Varda Lev-Ram, Roger Tsien, David Kleinfeld, Jeff Squier:
Quantitative Analysis of Volumetric TPLSM Data. ISBI 2004: 804-807
Coauthor Index
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