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Eckart Meese
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2020 – today
- 2022
- [j33]Anouck Becker
, Georges Pierre Schmartz
, Laura Gröger
, Nadja Liddy Grammes
, Valentina Galata
, Hannah Philippeit
, Jacqueline Weiland
, Nicole Ludwig
, Eckart Meese
, Sascha Tierling
, Jörn Walter
, Andreas Schwiertz
, Jörg Spiegel
, Gudrun Wagenpfeil
, Klaus Faßbender
, Andreas Keller
, Marcus M. Unger
:
Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson's Disease - The RESISTA-PD Trial. Genom. Proteom. Bioinform. 20(2): 274-287 (2022) - [j32]Jacqueline Rehner
, Georges Pierre Schmartz
, Laura Groeger
, Jan Dastbaz
, Nicole Ludwig
, Matthias Hannig
, Stefan Rupf
, Berthold Seitz
, Elias Flockerzi
, Tim Berger
, Matthias Christian Reichert
, Marcin Krawczyk
, Eckart Meese
, Christian Herr, Robert Bals
, Sören L. Becker
, Andreas Keller
, Rolf Müller
:
Systematic Cross-biospecimen Evaluation of DNA Extraction Kits for Long- and Short-read Multi-metagenomic Sequencing Studies. Genom. Proteom. Bioinform. 20(2): 405-417 (2022) - [j31]Andreas Keller
, Laura Gröger, Thomas Tschernig, Jeffrey Solomon, Omar Laham, Nicholas Schaum, Viktoria Wagner, Fabian Kern
, Georges Pierre Schmartz, Yongping Li, Adam Borcherding, Carola Meier, Tony Wyss-Coray
, Eckart Meese, Tobias Fehlmann
, Nicole Ludwig:
miRNATissueAtlas2: an update to the human miRNA tissue atlas. Nucleic Acids Res. 50(D1): 211-221 (2022) - 2021
- [j30]Fabian Kern
, Ernesto Aparicio-Puerta
, Yongping Li, Tobias Fehlmann
, Tim Kehl
, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
:
miRTargetLink 2.0 - interactive miRNA target gene and target pathway networks. Nucleic Acids Res. 49(Webserver-Issue): 409-416 (2021) - 2020
- [j29]Fabian Kern, Christina Backes, Pascal Hirsch
, Tobias Fehlmann, Martin Hart, Eckart Meese, Andreas Keller:
What's the target: understanding two decades of in silico microRNA-target prediction. Briefings Bioinform. 21(6): 1999-2010 (2020) - [j28]Tim Kehl
, Fabian Kern
, Christina Backes
, Tobias Fehlmann
, Daniel Stöckel, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
:
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database. Nucleic Acids Res. 48(Database-Issue): D142-D147 (2020) - [j27]Fabian Kern
, Jérémy Amand
, Ilya Senatorov, Alina Isakova
, Christina Backes
, Eckart Meese
, Andreas Keller
, Tobias Fehlmann
:
miRSwitch: detecting microRNA arm shift and switch events. Nucleic Acids Res. 48(Webserver-Issue): W268-W274 (2020) - [j26]Nico Gerstner, Tim Kehl
, Kerstin Lenhof
, Anne Müller, Carolin Mayer, Lea Eckhart
, Nadja Liddy Grammes, Caroline Diener
, Martin Hart, Oliver Hahn
, Jörn Walter
, Tony Wyss-Coray
, Eckart Meese, Andreas Keller
, Hans-Peter Lenhof:
GeneTrail 3: advanced high-throughput enrichment analysis. Nucleic Acids Res. 48(Webserver-Issue): W515-W520 (2020) - [j25]Fabian Kern
, Tobias Fehlmann
, Jeffrey Solomon, Louisa Schwed, Nadja Liddy Grammes
, Christina Backes
, Kendall Van Keuren-Jensen, David W. Craig
, Eckart Meese
, Andreas Keller
:
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. Nucleic Acids Res. 48(Webserver-Issue): W521-W528 (2020)
2010 – 2019
- 2019
- [j24]Lara Schneider
, Tim Kehl
, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes
, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof
, Nico Gerstner
, Andreas Daniel Hartkopf, Markus Wallwiener
, Oliver Kohlbacher
, Andreas Keller, Eckart Meese, Norbert M. Graf
, Hans-Peter Lenhof:
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification. Bioinform. 35(24): 5171-5181 (2019) - [j23]Valentina Galata
, Cedric Christian Laczny
, Christina Backes
, Georg Hemmrich-Stanisak
, Susanne Schmolke
, Andre Franke
, Eckart Meese
, Mathias Herrmann
, Lutz von Müller
, Achim Plum
, Rolf Müller
, Cord Stähler
, Andreas E. Posch
, Andreas Keller
:
Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11, 087 Clinical Isolates. Genom. Proteom. Bioinform. 17(2): 169-182 (2019) - [j22]Nicole Ludwig
, Tobias Fehlmann
, Fabian Kern
, Manfred Gogol
, Walter Maetzler
, Stephanie Deutscher
, Simone Gurlit
, Claudia Schulte
, Anna-Katharina von Thaler
, Christian Deuschle
, Florian G. Metzger
, Daniela Berg
, Ulrike Suenkel
, Verena Keller
, Christina Backes
, Hans-Peter Lenhof
, Eckart Meese
, Andreas Keller
:
Machine Learning to Detect Alzheimer's Disease from Circulating Non-coding RNAs. Genom. Proteom. Bioinform. 17(4): 430-440 (2019) - 2018
- [j21]Tobias Fehlmann, Christina Backes
, Julia Alles, Ulrike Fischer, Martin Hart, Fabian Kern
, Hilde Langseth, Trine Rounge
, Sinan Ugur Umu, Mustafa Kahraman, Thomas Laufer, Jan Haas, Cord Staehler, Nicole Ludwig, Matthias Hübenthal
, Benjamin Meder, Andre Franke, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
:
A high-resolution map of the human small non-coding transcriptome. Bioinform. 34(10): 1621-1628 (2018) - [j20]Tim Kehl
, Lara Schneider, Kathrin Kattler
, Daniel Stöckel, Jenny Wegert
, Nico Gerstner
, Nicole Ludwig, Ute Distler
, Markus Schick, Ulrich Keller
, Stefan Tenzer, Manfred Gessler
, Jörn Walter, Andreas Keller
, Norbert M. Graf
, Eckart Meese, Hans-Peter Lenhof:
REGGAE: a novel approach for the identification of key transcriptional regulators. Bioinform. 34(20): 3503-3510 (2018) - [j19]Andreas Keller
, Tobias Fehlmann
, Nicole Ludwig
, Mustafa Kahraman
, Thomas Laufer
, Christina Backes
, Claus Vogelmeier
, Caroline Diener
, Frank Biertz
, Christian Herr
, Rudolf A. Jörres
, Hans-Peter Lenhof
, Eckart Meese
, Robert Bals
:
Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development. Genom. Proteom. Bioinform. 16(3): 162-171 (2018) - [j18]Christina Backes, Tobias Fehlmann, Fabian Kern
, Tim Kehl
, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
:
miRCarta: a central repository for collecting miRNA candidates. Nucleic Acids Res. 46(Database-Issue): D160-D167 (2018) - [j17]Valeria Palmieri, Christina Backes, Nicole Ludwig, Tobias Fehlmann, Fabian Kern
, Eckart Meese, Andreas Keller
:
IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions. Nucleic Acids Res. 46(Database-Issue): D770-D775 (2018) - 2017
- [j16]Christina Backes, Tim Kehl
, Daniel Stöckel, Tobias Fehlmann, Lara Schneider, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
:
miRPathDB: a new dictionary on microRNAs and target pathways. Nucleic Acids Res. 45(Database-Issue): D90-D96 (2017) - [j15]Tim Kehl
, Lara Schneider, Florian Schmidt
, Daniel Stöckel, Nico Gerstner
, Christina Backes, Eckart Meese, Andreas Keller
, Marcel H. Schulz
, Hans-Peter Lenhof:
RegulatorTrail: a web service for the identification of key transcriptional regulators. Nucleic Acids Res. 45(Webserver-Issue): W146-W153 (2017) - 2016
- [j14]Daniel Stöckel, Tim Kehl
, Patrick Trampert, Lara Schneider, Christina Backes, Nicole Ludwig, Andreas Gerasch, Michael Kaufmann, Manfred Gessler
, Norbert M. Graf
, Eckart Meese, Andreas Keller, Hans-Peter Lenhof:
Multi-omics enrichment analysis using the GeneTrail2 web service. Bioinform. 32(10): 1502-1508 (2016) - [j13]Sabine C. Mueller
, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina
, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller:
BALL-SNPgp - from genetic variants toward computational diagnostics. Bioinform. 32(12): 1888-1890 (2016) - [j12]Alexander Marx
, Christina Backes
, Eckart Meese
, Hans-Peter Lenhof
, Andreas Keller
:
EDISON-WMW: Exact Dynamic Programing Solution of the Wilcoxon-Mann-Whitney Test. Genom. Proteom. Bioinform. 14(1): 55-61 (2016) - [j11]Christina Backes, Qurratulain T. Khaleeq, Eckart Meese, Andreas Keller:
miEAA: microRNA enrichment analysis and annotation. Nucleic Acids Res. 44(Webserver-Issue): W110-W116 (2016) - 2015
- [j10]Sabine C. Mueller
, Christina Backes, Jan Haas, Hugo A. Katus, Benjamin Meder, Eckart Meese, Andreas Keller
:
Pathogenicity prediction of non-synonymous single nucleotide variants in dilated cardiomyopathy. Briefings Bioinform. 16(5): 769-779 (2015) - [j9]Sachli Zafari
, Christina Backes
, Petra Leidinger
, Eckart Meese
, Andreas Keller
:
Regulatory MicroRNA Networks: Complex Patterns of Target Pathways for Disease-related and Housekeeping MicroRNAs. Genom. Proteom. Bioinform. 13(3): 159-168 (2015) - 2012
- [j8]Cedric Laczny
, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A. Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
:
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinform. 13: 36 (2012) - [j7]Cord F. Stähler, Andreas Keller
, Petra Leidinger, Christina Backes, Anoop Chandran, Jöerg Wischhusen, Benjamin Meder, Eckart Meese:
Whole miRNome-wide Differential Co-expression of MicroRNAs. Genom. Proteom. Bioinform. 10(5): 285-294 (2012)
2000 – 2009
- 2009
- [j6]Andreas Keller
, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher
, Eckart Meese, Hans-Peter Lenhof:
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinform. 25(21): 2787-2794 (2009) - [j5]Andreas Keller
, Nicole Ludwig, Sabrina Heisel, Petra Leidinger, Claudia Andres, Wolf-Ingo Steudel, Hanno Huwer, Bernhard Burgeth, Matthias Hein, Joachim Weickert, Eckart Meese, Hans-Peter Lenhof:
Large-scale antibody profiling of human blood sera: The future of molecular diagnosis. Inform. Spektrum 32(4): 332-338 (2009) - 2007
- [j4]Christina Backes, Andreas Keller
, Jan Küntzer, Benny Kneissl, Nicole Comtesse, Yasser A. Elnakady, Rolf Müller
, Eckart Meese, Hans-Peter Lenhof:
GeneTrail - advanced gene set enrichment analysis. Nucleic Acids Res. 35(Web-Server-Issue): 186-192 (2007) - [j3]Andreas Keller
, Nicole Comtesse, Nicole Ludwig, Eckart Meese, Hans-Peter Lenhof:
SePaCS - a web-based application for classification of seroreactivity profiles. Nucleic Acids Res. 35(Web-Server-Issue): 683-687 (2007) - 2006
- [j2]Andreas Keller
, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt
, Eckart Meese, Hans-Peter Lenhof:
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinform. 7: 539 (2006) - 2005
- [j1]Christina Backes, Jan Küntzer, Hans-Peter Lenhof, Nicole Comtesse, Eckart Meese:
GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. Nucleic Acids Res. 33(Web-Server-Issue): 208-213 (2005)
Coauthor Index
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