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Kieran Smallbone
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2010 – 2019
- 2017
- [j10]Pierre Millard
, Kieran Smallbone
, Pedro Mendes
:
Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j9]Dagmar Waltemath
, Jonathan R. Karr
, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka
, Marcus Krantz, Wolfram Liebermeister
, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu
, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke
, Matteo Cantarelli, Yin Hoon Chew
, Rafael S. Costa, Joseph Cursons
, Tobias Czauderna
, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn
, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev
, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König
, Daewon Lee
, Audald Lloret-Villas
, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin
, Sucheendra K. Palaniappan
, Daniel Priego-Espinosa
, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford
, Je-Hoon Song, Tom Theile
, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai
, Leandro H. Watanabe, Florian Wendland, Markus Wolfien
, James T. Yurkovich, Yan Zhu
, Argyris Zardilis, Anna Zhukova, Falk Schreiber:
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63(10): 2007-2014 (2016) - 2015
- [j8]Alejandro Fernández Villaverde
, David Henriques
, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach
, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto
, Pedro Mendes
, Johannes Jaeger
, Julio R. Banga
:
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Syst. Biol. 9: 8 (2015) - [j7]Brandon E. Barker
, Narayanan Sadagopan, Yiping Wang, Kieran Smallbone, Christopher R. Myers, Hongwei Xi, Jason W. Locasale
, Zhenglong Gu:
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data. Comput. Biol. Chem. 59: 98-112 (2015) - 2014
- [e1]Pedro Mendes
, Joseph O. Dada
, Kieran Smallbone:
Computational Methods in Systems Biology - 12th International Conference, CMSB 2014, Manchester, UK, November 17-19, 2014, Proceedings. Lecture Notes in Computer Science 8859, Springer 2014, ISBN 978-3-319-12981-5 [contents] - [i1]Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes
, Johannes Jaeger, Julio R. Banga:
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. CoRR abs/1407.5856 (2014) - 2013
- [j6]Benjamin D. Heavner
, Kieran Smallbone
, Nathan D. Price
, Larry P. Walker:
Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. Database J. Biol. Databases Curation 2013 (2013) - 2012
- [j5]Benjamin D. Heavner
, Kieran Smallbone
, Brandon Barker
, Pedro Mendes
, Larry P. Walker:
Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network. BMC Syst. Biol. 6: 55 (2012) - [j4]Dave Lee, Kieran Smallbone
, Warwick B. Dunn
, Ettore Murabito, Catherine Winder, Douglas B. Kell
, Pedro Mendes
, Neil Swainston:
Improving metabolic flux predictions using absolute gene expression data. BMC Syst. Biol. 6: 73 (2012) - 2011
- [j3]Neil Swainston, Kieran Smallbone
, Pedro Mendes
, Douglas B. Kell
, Norman W. Paton:
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integr. Bioinform. 8(2) (2011) - [c2]Pedro Mendes, Natalie J. Stanford
, Kieran Smallbone:
Kinetic modelling of large-scale metabolic networks. CMSB 2011: 5-6 - 2010
- [j2]Kieran Smallbone
, Evangelos Simeonidis
, Neil Swainston, Pedro Mendes
:
Towards a genome-scale kinetic model of cellular metabolism. BMC Syst. Biol. 4: 6 (2010) - [j1]Paul D. Dobson, Kieran Smallbone
, Daniel Jameson
, Evangelos Simeonidis
, Karin Lanthaler, Pinar Pir
, Chuan Lu
, Neil Swainston, Warwick B. Dunn
, Paul Fisher, Duncan Hull
, Marie Brown, Olusegun Oshota, Natalie J. Stanford
, Douglas B. Kell
, Ross D. King
, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
:
Further developments towards a genome-scale metabolic model of yeast. BMC Syst. Biol. 4: 145 (2010)
2000 – 2009
- 2007
- [c1]Catherine J. Kelly, Kieran Smallbone, Tiina Roose, Michael Brady:
A Model to Investigate the Feasibility of Fdg as a Surrogate Marker of Hypoxia. ISBI 2007: 540-543
Coauthor Index
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