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ORCIDJohn S. Lowengrub
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- affiliation: University of California, Irvine, Department of Mathematics, CA, USA
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2020 – today
- 2024
[i11]Ray Zirui Zhang
, Xiaohui Xie, John S. Lowengrub:
BiLO: Bilevel Local Operator Learning for PDE inverse problems. CoRR abs/2404.17789 (2024)- 2023
- [j51]Amlan K. Barua, Ray Chew, Shuwang Li, John S. Lowengrub, Andreas Münch, Barbara Wagner:
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers. J. Comput. Phys. 481: 112032 (2023) - [j50]Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84: 102680 (2023) - [i10]Ray Zirui Zhang, Ivan Ezhov, Michal Balcerak, Andy Zhu, Benedikt Wiestler, Bjoern H. Menze, John S. Lowengrub:
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans. CoRR abs/2311.16536 (2023) - [i9]Michal Balcerak, Ivan Ezhov, Petr Karnakov, Sergey Litvinov, Petros Koumoutsakos, Jonas Weidner, Ray Zirui Zhang, John S. Lowengrub, Benedikt Wiestler, Bjoern H. Menze:
Individualizing Glioma Radiotherapy Planning by Optimization of a Data and Physics Informed Discrete Loss. CoRR abs/2312.05063 (2023) - 2022
- [j49]Zhenlin Guo, Qing Cheng, Ping Lin, Chun Liu, John S. Lowengrub:
Second order approximation for a quasi-incompressible Navier-Stokes Cahn-Hilliard system of two-phase flows with variable density. J. Comput. Phys. 448: 110727 (2022) - [j48]Min-Jhe Lu, Wenrui Hao, Chun Liu, John S. Lowengrub, Shuwang Li:
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis. J. Comput. Phys. 459: 111153 (2022) - [j47]Joseph D. Butner, Prashant Dogra, Caroline Chung, Renata Pasqualini, Wadih Arap, John S. Lowengrub, Vittorio Cristini, Zhihui Wang:
Mathematical modeling of cancer immunotherapy for personalized clinical translation. Nat. Comput. Sci. 2(12): 785-796 (2022) - [j46]Peter Uhl, John S. Lowengrub, Natalia L. Komarova, Dominik Wodarz:
Spatial dynamics of feedback and feedforward regulation in cell lineages. PLoS Comput. Biol. 18(5) (2022) - [j45]Huaming Yan, Daniel Ramirez-Guerrero, John S. Lowengrub, Min Wu:
Correction: Stress generation, relaxation and size control in confined tumor growth. PLoS Comput. Biol. 18(6) (2022) - [i8]Meng Zhao, Pedro Anjos, John S. Lowengrub, Wenjun Ying, Shuwang Li:
Numerical study on viscous fingering using electric fields in a Hele-Shaw cell. CoRR abs/2201.05956 (2022) - [i7]Xiaoxia Tang, Shuwang Li, John S. Lowengrub, Steven M. Wise:
Phase field modeling and computation of vesicle growth or shrinkage. CoRR abs/2209.13690 (2022) - 2021
- [j44]Huaming Yan, Daniel Ramirez-Guerrero, John S. Lowengrub, Min Wu:
Stress generation, relaxation and size control in confined tumor growth. PLoS Comput. Biol. 17(12) (2021) - [j43]Joseph D. Butner, David Fuentes, Bulent Ozpolat, George A. Calin, Xiaobo Zhou, John S. Lowengrub, Vittorio Cristini, Zhihui Wang:
Corrections to "A multiscale Agent-Based Model of Ductal Carcinoma in Situ". IEEE Trans. Biomed. Eng. 68(2): 736 (2021) - [i6]Amlan K. Barua, Ray Chew, Shuwang Li, John S. Lowengrub, Andreas Münch, Barbara Wagner:
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers. CoRR abs/2107.04366 (2021) - [i5]Min-Jhe Lu, Wenrui Hao, Chun Liu, John S. Lowengrub, Shuwang Li:
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis. CoRR abs/2107.11701 (2021) - 2020
- [j42]Fei Yu, Zhenlin Guo, John S. Lowengrub:
Higher-order accurate diffuse-domain methods for partial differential equations with Dirichlet boundary conditions in complex, evolving geometries. J. Comput. Phys. 406: 109174 (2020) - [j41]Joseph D. Butner, David Fuentes, Bulent Ozpolat, George A. Calin, Xiaobo Zhou, John S. Lowengrub, Vittorio Cristini, Zhihui Wang:
A Multiscale Agent-Based Model of Ductal Carcinoma In Situ. IEEE Trans. Biomed. Eng. 67(5): 1450-1461 (2020)
2010 – 2019
- 2019
- [j40]Mariano Franco-de-Leon, John S. Lowengrub:
Boundary integral methods for dispersive equations, Airy flow and the modified Korteweg de Vries equation. Adv. Comput. Math. 45(1): 99-135 (2019) - [j39]Emma Turian, Kai Liu, John S. Lowengrub, Shuwang Li:
Morphological stability of an elastic tumor-host interface. J. Comput. Appl. Math. 362: 410-422 (2019) - [j38]Kai Liu, John S. Lowengrub, Jun Allard:
Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales. J. Comput. Phys. 386: 248-263 (2019) - [j37]Kai Liu, Brian Chu, Jay M. Newby, Elizabeth L. Read, John S. Lowengrub, Jun Allard:
Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length. PLoS Comput. Biol. 15(4) (2019) - [j36]Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference. IEEE Trans. Medical Imaging 38(8): 1875-1884 (2019) - [i4]Patrick Bilic, Patrick Ferdinand Christ, Eugene Vorontsov, Grzegorz Chlebus, Hao Chen, Qi Dou, Chi-Wing Fu, Xiao Han, Pheng-Ann Heng, Jürgen Hesser, Samuel Kadoury, Tomasz K. Konopczynski, Miao Le, Chunming Li, Xiaomeng Li, Jana Lipková, John S. Lowengrub, Hans Meine, Jan Hendrik Moltz, Chris Pal, Marie Piraud, Xiaojuan Qi, Jin Qi, Markus Rempfler, Karsten Roth, Andrea Schenk, Anjany Sekuboyina, Ping Zhou, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Felix Grün, Georgios Kaissis, Fabian Lohöfer, Rickmer Braren, Julian Holch, Felix Hofmann, Wieland H. Sommer, Volker Heinemann, Colin Jacobs, Gabriel Efrain Humpire Mamani, Bram van Ginneken, Gabriel Chartrand, An Tang, Michal Drozdzal, Avi Ben-Cohen, Eyal Klang, Michal Marianne Amitai, Eli Konen, Hayit Greenspan, Johan Moreau, Alexandre Hostettler, Luc Soler, Refael Vivanti, Adi Szeskin, Naama Lev-Cohain, Jacob Sosna, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). CoRR abs/1901.04056 (2019) - [i3]Min-Jhe Lu, Chun Liu, John S. Lowengrub, Shuwang Li:
Complex far-field geometries determine the stability of solid tumor growth with chemotaxis. CoRR abs/1912.04967 (2019) - 2018
- [j35]Wenqiang Feng, Zhenlin Guo, John S. Lowengrub, Steven M. Wise:
A mass-conservative adaptive FAS multigrid solver for cell-centered finite difference methods on block-structured, locally-cartesian grids. J. Comput. Phys. 352: 463-497 (2018) - [j34]Ying Chen, John S. Lowengrub, Jie Shen, Cheng Wang, Steven M. Wise:
Efficient energy stable schemes for isotropic and strongly anisotropic Cahn-Hilliard systems with the Willmore regularization. J. Comput. Phys. 365: 56-73 (2018) - [j33]Wenqiang Feng, Zhen Guan, John S. Lowengrub, Cheng Wang, Steven M. Wise, Ying Chen:
A Uniquely Solvable, Energy Stable Numerical Scheme for the Functionalized Cahn-Hilliard Equation and Its Convergence Analysis. J. Sci. Comput. 76(3): 1938-1967 (2018) - [j32]Meng Zhao, Xiaofan Li, Wenjun Ying, Andrew Belmonte, John S. Lowengrub, Shuwang Li:
Computation of a Shrinking Interface in a Hele-Shaw Cell. SIAM J. Sci. Comput. 40(4): B1206-B1228 (2018) - [i2]Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration. CoRR abs/1807.00499 (2018) - 2017
- [j31]Huaming Yan, Monica Romero-Lopez, Hermann B. Frieboes, Christopher C. W. Hughes, John S. Lowengrub:
Multiscale Modeling of Glioblastoma Suggests that the Partial Disruption of Vessel/Cancer Stem Cell Crosstalk Can Promote Tumor Regression Without Increasing Invasiveness. IEEE Trans. Biomed. Eng. 64(3): 538-548 (2017) - [i1]Jana Lipková, Markus Rempfler, Patrick Ferdinand Christ, John S. Lowengrub, Bjoern H. Menze:
Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation. CoRR abs/1704.02348 (2017) - 2016
- [j30]Xiaoming Zheng, John S. Lowengrub:
An interface-fitted adaptive mesh method for elliptic problems and its application in free interface problems with surface tension. Adv. Comput. Math. 42(5): 1225-1257 (2016) - [j29]Meng Zhao, Andrew Belmonte, Shuwang Li, Xiaofan Li, John S. Lowengrub:
Nonlinear simulations of elastic fingering in a Hele-Shaw cell. J. Comput. Appl. Math. 307: 394-407 (2016) - [j28]Yucheng Hu, John S. Lowengrub:
Collective Properties of a Transcription Initiation Model Under Varying Environment. J. Comput. Biol. 23(1): 56-66 (2016) - [j27]John S. Lowengrub, Jun Allard, Sebastian Aland:
Numerical simulation of endocytosis: Viscous flow driven by membranes with non-uniformly distributed curvature-inducing molecules. J. Comput. Phys. 309: 112-128 (2016) - [j26]Zhen Guan, Vili Heinonen, John S. Lowengrub, Cheng Wang, Steven M. Wise:
An energy stable, hexagonal finite difference scheme for the 2D phase field crystal amplitude equations. J. Comput. Phys. 321: 1026-1054 (2016) - [j25]Sameeran Kunche, Huaming Yan, Anne L. Calof, John S. Lowengrub, Arthur D. Lander:
Feedback, Lineages and Self-Organizing Morphogenesis. PLoS Comput. Biol. 12(3) (2016) - 2015
- [j24]Edward Meeds, Michael Chiang, Mary Lee, Olivier Cinquin, John S. Lowengrub, Max Welling:
POPE: post optimization posterior evaluation of likelihood free models. BMC Bioinform. 16: 264:1-264:20 (2015) - 2014
- [j23]Zhenlin Guo, Ping Lin, John S. Lowengrub:
A numerical method for the quasi-incompressible Cahn-Hilliard-Navier-Stokes equations for variable density flows with a discrete energy law. J. Comput. Phys. 276: 486-507 (2014) - [j22]Sebastian Aland, Sabine Egerer, John S. Lowengrub, Axel Voigt:
Diffuse interface models of locally inextensible vesicles in a viscous fluid. J. Comput. Phys. 277: 32-47 (2014) - [j21]Zhen Guan, John S. Lowengrub, Cheng Wang, Steven M. Wise:
Second order convex splitting schemes for periodic nonlocal Cahn-Hilliard and Allen-Cahn equations. J. Comput. Phys. 277: 48-71 (2014) - 2013
- [j20]Arvind Baskaran, Zhengzheng Hu, John S. Lowengrub, Cheng Wang, Steven M. Wise, Peng Zhou:
Energy stable and efficient finite-difference nonlinear multigrid schemes for the modified phase field crystal equation. J. Comput. Phys. 250: 270-292 (2013) - [j19]Arvind Baskaran, John S. Lowengrub, Cheng Wang, Steven M. Wise:
Convergence Analysis of a Second Order Convex Splitting Scheme for the Modified Phase Field Crystal Equation. SIAM J. Numer. Anal. 51(5): 2851-2873 (2013) - 2012
- [j18]Jian-Jun Xu, Yin Yang, John S. Lowengrub:
A level-set continuum method for two-phase flows with insoluble surfactant. J. Comput. Phys. 231(17): 5897-5909 (2012) - [j17]Xiangxin Zhu, Max Welling, Fang Jin, John S. Lowengrub:
Predicting simulation parameters of biological systems using a Gaussian process model. Stat. Anal. Data Min. 5(6): 509-522 (2012) - [j16]Andong He, John S. Lowengrub, Andrew Belmonte:
Modeling an Elastic Fingering Instability in a Reactive Hele-Shaw Flow. SIAM J. Appl. Math. 72(3): 842-856 (2012) - 2011
- [j15]Knut Erik Teigen, Peng Song, John S. Lowengrub, Axel Voigt:
A diffuse-interface method for two-phase flows with soluble surfactants. J. Comput. Phys. 230(2): 375-393 (2011) - [j14]Shingyu Leung, John S. Lowengrub, Hongkai Zhao:
A grid based particle method for solving partial differential equations on evolving surfaces and modeling high order geometrical motion. J. Comput. Phys. 230(7): 2540-2561 (2011) - [j13]Steven M. Wise, John S. Lowengrub, Vittorio Cristini:
An adaptive multigrid algorithm for simulating solid tumor growth using mixture models. Math. Comput. Model. 53(1-2): 1-20 (2011) - 2010
- [j12]Jin Sun Sohn, Yu-Hau Tseng, Shuwang Li, Axel Voigt, John S. Lowengrub:
Dynamics of multicomponent vesicles in a viscous fluid. J. Comput. Phys. 229(1): 119-144 (2010)
2000 – 2009
- 2009
- [j11]Zhengzheng Hu, Steven M. Wise, Cheng Wang, John S. Lowengrub:
Stable and efficient finite-difference nonlinear-multigrid schemes for the phase field crystal equation. J. Comput. Phys. 228(15): 5323-5339 (2009) - [j10]Steven M. Wise, Cheng Wang, John S. Lowengrub:
An Energy-Stable and Convergent Finite-Difference Scheme for the Phase Field Crystal Equation. SIAM J. Numer. Anal. 47(3): 2269-2288 (2009) - 2008
- [j9]Paul Macklin, John S. Lowengrub:
A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth. J. Sci. Comput. 35(2-3): 266-299 (2008) - 2007
- [j8]Shuwang Li, John S. Lowengrub, Perry H. Leo:
A rescaling scheme with application to the long-time simulation of viscous fingering in a Hele-Shaw cell. J. Comput. Phys. 225(1): 554-567 (2007) - [j7]Steven M. Wise, Junseok Kim, John S. Lowengrub:
Solving the regularized, strongly anisotropic Cahn-Hilliard equation by an adaptive nonlinear multigrid method. J. Comput. Phys. 226(1): 414-446 (2007) - 2006
- [j6]Jian-Jun Xu, Zhilin Li, John S. Lowengrub, Hongkai Zhao:
A level-set method for interfacial flows with surfactant. J. Comput. Phys. 212(2): 590-616 (2006) - [j5]Paul Macklin, John S. Lowengrub:
An improved geometry-aware curvature discretization for level set methods: Application to tumor growth. J. Comput. Phys. 215(2): 392-401 (2006) - [j4]Xiaofeng Yang, Ashley J. James, John S. Lowengrub, Xiaoming Zheng, Vittorio Cristini:
An adaptive coupled level-set/volume-of-fluid interface capturing method for unstructured triangular grids. J. Comput. Phys. 217(2): 364-394 (2006)
1990 – 1999
- 1999
- [j3]Russel E. Caflisch, Thomas Y. Hou, John S. Lowengrub:
Almost optimal convergence of the point vortex method for vortex sheets using numerical filtering. Math. Comput. 68(228): 1465-1496 (1999) - 1993
- [j2]Thomas Y. Hou, John S. Lowengrub, Michael J. Shelley:
The Convergence of an Exact Desingularization for Vortex Methods. SIAM J. Sci. Comput. 14(1): 1-18 (1993) - [j1]John S. Lowengrub, Michael J. Shelley, Barry Merriman:
High-Order and Efficient Methods for the Vorticity Formulation of the Euler Equations. SIAM J. Sci. Comput. 14(5): 1107-1142 (1993)
Coauthor Index
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