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Jens Kleesiek
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- affiliation: University Hospital Essen, Germany
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2020 – today
- 2025
- [j22]Markus R. Bujotzek
, Ünal Akünal, Stefan Denner, Peter Neher, Maximilian Zenk, Eric Frodl, Astha Jaiswal, Moon S. Kim, Nicolai R. Krekiehn, Manuel Nickel, Richard Ruppel, Marcus Both, Felix Döllinger, Marcel Opitz, Thorsten Persigehl, Jens Kleesiek, Tobias Penzkofer, Klaus H. Maier-Hein, Andreas Bucher, Rickmer Braren:
Real-world federated learning in radiology: hurdles to overcome and benefits to gain. J. Am. Medical Informatics Assoc. 32(1): 193-205 (2025) - 2024
- [j21]Moritz Rempe
, Florian Mentzel, Kelsey L. Pomykala
, Johannes Haubold
, Felix Nensa, Kevin Kröninger, Jan Egger
, Jens Kleesiek
:
k-strip: A novel segmentation algorithm in k-space for the application of skull stripping. Comput. Methods Programs Biomed. 243: 107912 (2024) - [j20]Jianning Li, Amin Dada, Behrus Puladi
, Jens Kleesiek, Jan Egger
:
ChatGPT in healthcare: A taxonomy and systematic review. Comput. Methods Programs Biomed. 245: 108013 (2024) - [j19]Johannes Raufeisen, Kunpeng Xie, Fabian Hörst
, Till Braunschweig
, Jianning Li, Jens Kleesiek
, Rainer Röhrig, Jan Egger, Bastian Leibe
, Frank Hölzle, Alexander Hermans
, Behrus Puladi
:
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images. Comput. Methods Programs Biomed. 252: 108215 (2024) - [j18]Jianning Li, David G. Ellis, Antonio Pepe, Christina Gsaxner, Michele R. Aizenberg, Jens Kleesiek, Jan Egger:
Back to the Roots: Reconstructing Large and Complex Cranial Defects using an Image-based Statistical Shape Model. J. Medical Syst. 48(1): 55 (2024) - [j17]André Ferreira
, Jianning Li, Kelsey L. Pomykala
, Jens Kleesiek
, Victor Alves
, Jan Egger:
GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy. Medical Image Anal. 93: 103100 (2024) - [j16]Fabian Hörst
, Moritz Rempe
, Lukas Heine
, Constantin Seibold
, Julius Keyl
, Giulia Baldini
, Selma Ugurel
, Jens Siveke
, Barbara Grünwald
, Jan Egger, Jens Kleesiek
:
CellViT: Vision Transformers for precise cell segmentation and classification. Medical Image Anal. 94: 103143 (2024) - [j15]André Ferreira, Jianning Li, Kelsey L. Pomykala, Jens Kleesiek, Victor Alves, Jan Egger:
Corrigendum to: GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy [Medical Image Analysis 93 (2024)]. Medical Image Anal. 96: 103174 (2024) - [j14]Tianyu Han, Sven Nebelung
, Firas Khader, Tianci Wang, Gustav Müller-Franzes
, Christiane Kuhl, Sebastian Försch
, Jens Kleesiek
, Christoph Haarburger, Keno K. Bressem
, Jakob Nikolas Kather
, Daniel Truhn
:
Medical large language models are susceptible to targeted misinformation attacks. npj Digit. Medicine 7(1) (2024) - [j13]Isabella C. Wiest, Dyke Ferber, Jiefu Zhu, Marko van Treeck, Sonja K. Meyer, Radhika Juglan, Zunamys I. Carrero
, Daniel Paech, Jens Kleesiek
, Matthias P. Ebert, Daniel Truhn
, Jakob Nikolas Kather
:
Privacy-preserving large language models for structured medical information retrieval. npj Digit. Medicine 7(1) (2024) - [j12]Zdravko Marinov
, Paul F. Jäger
, Jan Egger
, Jens Kleesiek
, Rainer Stiefelhagen
:
Deep Interactive Segmentation of Medical Images: A Systematic Review and Taxonomy. IEEE Trans. Pattern Anal. Mach. Intell. 46(12): 10998-11018 (2024) - [j11]Wen Li
, Saikit Lam
, Yinghui Wang
, Chenyang Liu
, Tian Li
, Jens Kleesiek
, Andy Lai-Yin Cheung
, Ying Sun
, Francis Kar-ho Lee
, Kwok-hung Au
, Victor Ho-fun Lee
, Jing Cai
:
Model Generalizability Investigation for GFCE-MRI Synthesis in NPC Radiotherapy Using Multi-Institutional Patient-Based Data Normalization. IEEE J. Biomed. Health Informatics 28(1): 100-109 (2024) - [c42]Marie Bauer, Constantin Seibold, Jens Kleesiek, Amin Dada:
IKIM at MEDIQA-M3G 2024: Multilingual Visual Question-Answering for Dermatology through VLM Fine-tuning and LLM Translations. ClinicalNLP@NAACL 2024: 439-447 - [c41]Maximilian Fischer, Peter Neher, Peter J. Schüffler, Shuhan Xiao, Silvia Dias Almeida, Constantin Ulrich, Alexander Muckenhuber, Rickmer Braren, Michael Götz, Jens Kleesiek, Marco Nolden, Klaus H. Maier-Hein:
Abstract: Enhanced Diagnostic Fidelity in Pathology Whole Slide Image Compression via Deep Learning. Bildverarbeitung für die Medizin 2024: 158 - [c40]Fabian Hörst
, Sajad H. Schaheer, Giulia Baldini
, Fin Hendrik Bahnsen
, Jan Egger
, Jens Kleesiek:
Accelerating Artificial Intelligence-based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline. Bildverarbeitung für die Medizin 2024: 356-361 - [c39]Ahmad Idrissi-Yaghir, Amin Dada, Henning Schäfer, Kamyar Arzideh, Giulia Baldini, Jan Trienes, Max Hasin, Jeanette Bewersdorff, Cynthia S. Schmidt, Marie Bauer, Kaleb E. Smith, Jiang Bian, Yonghui Wu, Jörg Schlötterer, Torsten Zesch, Peter A. Horn, Christin Seifert, Felix Nensa, Jens Kleesiek, Christoph M. Friedrich:
Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding. LREC/COLING 2024: 3654-3665 - [c38]Yannick Kirchhoff
, Maximilian R. Rokuss, Saikat Roy
, Balint Kovacs
, Constantin Ulrich
, Tassilo Wald, Maximilian Zenk
, Philipp Vollmuth
, Jens Kleesiek
, Fabian Isensee
, Klaus H. Maier-Hein
:
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures. ECCV (77) 2024: 218-234 - [c37]Markus Perz, Gijs Luijten, Jens Kleesiek, Dieter Schmalstieg, Jan Egger, Christina Gsaxner:
MultiAR: A Multi-User Augmented Reality Platform for Biomedical Education. EMBC 2024: 1-7 - [c36]Lukas Heine, Fabian Hörst, Enrico Nasca, Jens Siveke, Jan Egger, Moon S. Kim, Fin Hendrik Bahnsen, Jens Kleesiek:
Lean Study Host: Towards an Automated Pipeline for Multi-Center Study Hosting. HICSS 2024: 3235-3244 - [c35]André Ferreira, Gijs Luijten
, Behrus Puladi, Jens Kleesiek, Victor Alves, Jan Egger:
Generalisation of Segmentation Using Generative Adversarial Networks. ISBI 2024: 1-4 - [c34]Matthias Hadlich, Zdravko Marinov, Moon Kim, Enrico Nasca, Jens Kleesiek, Rainer Stiefelhagen:
Sliding Window Fastedit: A Framework for Lesion Annotation in Whole-Body Pet Images. ISBI 2024: 1-5 - [c33]Phuong Quynh Le, Jens Kleesiek, Constantin Seibold:
Enhancing Contrastive Training for Semi-Supervised Chest X-Ray Analysis Through Gaussian Mixture Models. ISBI 2024: 1-4 - [c32]Timo Van Meegdenburg, Gijs Luijten
, Jens Kleesiek, Behrus Puladi, André Ferreira, Jan Egger, Christina Gsaxner:
A Baseline Solution for the ISBI 2024 Dreaming Challenge. ISBI 2024: 1-3 - [c31]Maximilian Weber, Daniel Wild, Jens Kleesiek, Jan Egger, Christina Gsaxner:
Deep Learning-Based Point Cloud Registration for Augmented Reality-Guided Surgery. ISBI 2024: 1-5 - [c30]Alexander Jaus, Constantin Seibold, Simon Reiß, Lukas Heine, Anton Schily, Moon S. Kim, Fin Hendrik Bahnsen, Ken Herrmann, Rainer Stiefelhagen, Jens Kleesiek:
Anatomy-Guided Pathology Segmentation. MICCAI (8) 2024: 3-13 - [c29]Maximilian Fischer, Peter Neher, Tassilo Wald, Silvia Dias Almeida, Shuhan Xiao, Peter J. Schüffler, Rickmer Braren, Michael Götz, Alexander Muckenhuber, Jens Kleesiek, Marco Nolden, Klaus H. Maier-Hein:
Learned Image Compression for HE-Stained Histopathological Images via Stain Deconvolution. MOVI@MICCAI 2024: 97-107 - [d42]Johannes Raufeisen
, Kunpeng Xie
, Fabian Hörst
, Till Braunschweig
, Jianning Li
, Jens Kleesiek
, Rainer Röhrig
, Jan Egger
, Bastian Leibe
, Frank Hölzle
, Alexander Hermans
, Behrus Puladi
:
CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images. Zenodo, 2024 - [i66]Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Puladi:
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images. CoRR abs/2401.15638 (2024) - [i65]Ana Carolina Alves, André Ferreira, Gijs Luijten, Jens Kleesiek, Behrus Puladi, Jan Egger, Victor Alves:
Deep PCCT: Photon Counting Computed Tomography Deep Learning Applications Review. CoRR abs/2402.04301 (2024) - [i64]André Ferreira, Naida Solak, Jianning Li, Philipp Dammann, Jens Kleesiek, Victor Alves, Jan Egger:
How we won BraTS 2023 Adult Glioma challenge? Just faking it! Enhanced Synthetic Data Augmentation and Model Ensemble for brain tumour segmentation. CoRR abs/2402.17317 (2024) - [i63]Michael Götz, Christian Weber, Franciszek Binczyk, Joanna Polanska, Rafal Tarnawski, Barbara Bobek-Billewicz, Ullrich Köthe, Jens Kleesiek, Bram Stieltjes, Klaus H. Maier-Hein:
DALSA: Domain Adaptation for Supervised Learning From Sparsely Annotated MR Images. CoRR abs/2403.07434 (2024) - [i62]Zdravko Marinov, Moon S. Kim, Jens Kleesiek, Rainer Stiefelhagen:
Rethinking Annotator Simulation: Realistic Evaluation of Whole-Body PET Lesion Interactive Segmentation Methods. CoRR abs/2404.01816 (2024) - [i61]Yannick Kirchhoff
, Maximilian R. Rokuss, Saikat Roy, Balint Kovacs, Constantin Ulrich, Tassilo Wald, Maximilian Zenk, Philipp Vollmuth, Jens Kleesiek, Fabian Isensee, Klaus H. Maier-Hein:
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures. CoRR abs/2404.03010 (2024) - [i60]Amin Dada, Marie Bauer, Amanda Butler Contreras, Osman Alperen Koras, Constantin Marc Seibold, Kaleb E. Smith, Jens Kleesiek:
CLUE: A Clinical Language Understanding Evaluation for LLMs. CoRR abs/2404.04067 (2024) - [i59]Ahmad Idrissi-Yaghir, Amin Dada, Henning Schäfer, Kamyar Arzideh, Giulia Baldini, Jan Trienes, Max Hasin, Jeanette Bewersdorff, Cynthia S. Schmidt, Marie Bauer, Kaleb E. Smith, Jiang Bian, Yonghui Wu, Jörg Schlötterer, Torsten Zesch, Peter A. Horn, Christin Seifert, Felix Nensa, Jens Kleesiek, Christoph M. Friedrich:
Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding. CoRR abs/2404.05694 (2024) - [i58]Michael Lackner, Behrus Puladi, Jens Kleesiek, Jan Egger, Jianning Li:
A Semi-automatic Cranial Implant Design Tool Based on Rigid ICP Template Alignment and Voxel Space Reconstruction. CoRR abs/2404.15287 (2024) - [i57]Maximilian Weber, Daniel Wild, Jens Kleesiek, Jan Egger, Christina Gsaxner:
Deep Learning-based Point Cloud Registration for Augmented Reality-guided Surgery. CoRR abs/2405.03314 (2024) - [i56]Markus R. Bujotzek, Ünal Akünal, Stefan Denner, Peter Neher, Maximilian Zenk, Eric Frodl, Astha Jaiswal, Moon S. Kim, Nicolai R. Krekiehn, Manuel Nickel, Richard Ruppel
, Marcus Both, Felix Döllinger, Marcel Opitz, Thorsten Persigehl, Jens Kleesiek, Tobias Penzkofer, Klaus H. Maier-Hein, Rickmer Braren, Andreas Bucher:
Real-World Federated Learning in Radiology: Hurdles to overcome and Benefits to gain. CoRR abs/2405.09409 (2024) - [i55]Maximilian Fischer, Peter Neher, Tassilo Wald, Silvia Dias Almeida, Shuhan Xiao, Peter J. Schüffler, Rickmer Braren, Michael Götz, Alexander Muckenhuber, Jens Kleesiek, Marco Nolden, Klaus H. Maier-Hein:
Learned Image Compression for HE-stained Histopathological Images via Stain Deconvolution. CoRR abs/2406.12623 (2024) - [i54]Alexander Jaus, Constantin Seibold, Simon Reiß, Lukas Heine, Anton Schily, Moon Kim, Fin Hendrik Bahnsen, Ken Herrmann, Rainer Stiefelhagen, Jens Kleesiek:
Anatomy-guided Pathology Segmentation. CoRR abs/2407.05844 (2024) - [i53]Moritz Rempe
, Fabian Hörst, Constantin Seibold, Boris Hadaschik, Marc Schlimbach, Jan Egger, Kevin Kröninger, Felix Breuer, Martin Blaimer, Jens Kleesiek:
Tumor likelihood estimation on MRI prostate data by utilizing k-Space information. CoRR abs/2407.06165 (2024) - [i52]Felix J. Dorfner, Amin Dada, Felix Busch, Marcus R. Makowski, Tianyu Han, Daniel Truhn, Jens Kleesiek, Madhumita Sushil, Jacqueline Lammert, Lisa C. Adams, Keno K. Bressem:
Biomedical Large Languages Models Seem not to be Superior to Generalist Models on Unseen Medical Data. CoRR abs/2408.13833 (2024) - [i51]Hamza Kalisch, Fabian Hörst, Ken Herrmann, Jens Kleesiek, Constantin Seibold:
Autopet III challenge: Incorporating anatomical knowledge into nnUNet for lesion segmentation in PET/CT. CoRR abs/2409.12155 (2024) - [i50]Maximilian R. Rokuss, Yannick Kirchhoff, Saikat Roy, Balint Kovacs, Constantin Ulrich, Tassilo Wald, Maximilian Zenk, Stefan Denner, Fabian Isensee, Philipp Vollmuth, Jens Kleesiek, Klaus H. Maier-Hein:
Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting. CoRR abs/2409.13416 (2024) - [i49]Alexander Jaus, Simon Reiß, Jens Kleesiek, Rainer Stiefelhagen:
Data Diet: Can Trimming PET/CT Datasets Enhance Lesion Segmentation? CoRR abs/2409.13548 (2024) - [i48]Jonas Nasimzada, Jens Kleesiek, Ken Herrmann, Alina Roitberg, Constantin Seibold:
Towards Synthetic Data Generation for Improved Pain Recognition in Videos under Patient Constraints. CoRR abs/2409.16382 (2024) - [i47]Lukas Heine, Fabian Hörst, Jana Fragemann, Gijs Luijten, Miriam Balzer, Jan Egger, Fin Hendrik Bahnsen, M. Saquib Sarfraz, Jens Kleesiek, Constantin Seibold:
Spacewalker: Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data. CoRR abs/2409.16793 (2024) - [i46]Moritz Rempe, Lukas Heine, Constantin Seibold, Fabian Hörst, Jens Kleesiek:
De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy. CoRR abs/2410.12402 (2024) - [i45]Lena Heinemann, Alexander Jaus, Zdravko Marinov, Moon S. Kim, Maria Francesca Spadea, Jens Kleesiek, Rainer Stiefelhagen:
LIMIS: Towards Language-based Interactive Medical Image Segmentation. CoRR abs/2410.16939 (2024) - [i44]Alexander Jaus, Constantin Seibold, Simon Reiß, Zdravko Marinov, Keyi Li, Zeling Ye, Stefan Krieg, Jens Kleesiek, Rainer Stiefelhagen:
Every Component Counts: Rethinking the Measure of Success for Medical Semantic Segmentation in Multi-Instance Segmentation Tasks. CoRR abs/2410.18684 (2024) - [i43]André Ferreira, Gijs Luijten, Behrus Puladi, Jens Kleesiek, Victor Alves, Jan Egger:
Brain Tumour Removing and Missing Modality Generation using 3D WDM. CoRR abs/2411.04630 (2024) - [i42]André Ferreira, Tiago Jesus, Behrus Puladi, Jens Kleesiek, Victor Alves, Jan Egger:
Improved Multi-Task Brain Tumour Segmentation with Synthetic Data Augmentation. CoRR abs/2411.04632 (2024) - [i41]Nikoo Moradi, André Ferreira, Behrus Puladi, Jens Kleesiek, Emad Fatemizadeh, Gijs Luijten, Victor Alves, Jan Egger:
Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-guided Radiotherapy. CoRR abs/2411.14752 (2024) - [i40]Maximilian Fischer, Peter Neher, Peter J. Schüffler, Sebastian Ziegler, Shuhan Xiao, Robin Peretzke, David A. Clunie, Constantin Ulrich, Michael Baumgartner, Alexander Muckenhuber, Silvia Dias Almeida, Michael Götz, Jens Kleesiek, Marco Nolden, Rickmer Braren, Klaus H. Maier-Hein:
Unlocking the Potential of Digital Pathology: Novel Baselines for Compression. CoRR abs/2412.13137 (2024) - 2023
- [j10]Christian Strack, Kelsey L. Pomykala, Heinz-Peter Schlemmer, Jan Egger, Jens Kleesiek:
"A net for everyone": fully personalized and unsupervised neural networks trained with longitudinal data from a single patient. BMC Medical Imaging 23(1): 174 (2023) - [j9]Oliver Ester, Fabian Hörst
, Constantin Seibold
, Julius Keyl
, Saskia Ting, Nikolaos Vasileiadis, Jessica Schmitz
, Philipp Ivanyi, Viktor Grünwald, Jan Hinrich Bräsen
, Jan Egger, Jens Kleesiek:
Valuing vicinity: Memory attention framework for context-based semantic segmentation in histopathology. Comput. Medical Imaging Graph. 107: 102238 (2023) - [j8]Christina Gsaxner
, Jianning Li, Antonio Pepe, Yuan Jin
, Jens Kleesiek
, Dieter Schmalstieg
, Jan Egger:
The HoloLens in medicine: A systematic review and taxonomy. Medical Image Anal. 85: 102757 (2023) - [j7]Jianning Li, David G. Ellis
, Oldrich Kodym, Laurèl Rauschenbach, Christoph Rieß, Ulrich Sure, Karsten H. Wrede, Carlos M. Alvarez, Marek Wodzinski
, Mateusz Daniol
, Daria Hemmerling
, Hamza Mahdi, Allison Clement, Evan Kim, Zachary Fishman, Cari M. Whyne, James G. Mainprize, Michael R. Hardisty, Shashwat Pathak, Chitimireddy Sindhura, Rama Krishna Sai S. Gorthi, Degala Venkata Kiran, Subrahmanyam Gorthi, Bokai Yang, Ke Fang, Xingyu Li, Artem Kroviakov, Lei Yu, Yuan Jin, Antonio Pepe, Christina Gsaxner, Adam Herout, Victor Alves
, Michal Spanel, Michele R. Aizenberg, Jens Kleesiek, Jan Egger:
Towards clinical applicability and computational efficiency in automatic cranial implant design: An overview of the AutoImplant 2021 cranial implant design challenge. Medical Image Anal. 88: 102865 (2023) - [j6]Jianning Li, André Ferreira, Behrus Puladi
, Victor Alves
, Michael Kamp, Moon S. Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger:
Open-source skull reconstruction with MONAI. SoftwareX 23: 101432 (2023) - [c28]Maximilian Fischer, Peter Neher
, Michael Götz, Shuhan Xiao, Silvia Dias Almeida, Peter J. Schüffler, Alexander Muckenhuber, Rickmer Braren, Jens Kleesiek, Marco Nolden, Klaus H. Maier-Hein:
Abstract: Deep-learning on Lossily Compressed Pathology Images - Adverse Effects for ImageNet Pre-trained Models. Bildverarbeitung für die Medizin 2023: 245 - [c27]Amin Dada
, Aokun Chen, Cheng Peng, Kaleb E. Smith, Ahmad Idrissi-Yaghir, Constantin Seibold, Jianning Li, Lars Heiliger, Christoph M. Friedrich
, Daniel Truhn, Jan Egger, Jiang Bian, Jens Kleesiek, Yonghui Wu:
On the Impact of Cross-Domain Data on German Language Models. EMNLP (Findings) 2023: 13801-13813 - [c26]Zdravko Marinov, Simon Reiß, David Kersting, Jens Kleesiek, Rainer Stiefelhagen:
Mirror U-Net: Marrying Multimodal Fission with Multi-task Learning for Semantic Segmentation in Medical Imaging. ICCV (Workshops) 2023: 2275-2285 - [c25]Verena Jasmin Hallitschke, Tobias Schlumberger, Philipp Kataliakos, Zdravko Marinov
, Moon Kim, Lars Heiliger, Constantin Seibold, Jens Kleesiek, Rainer Stiefelhagen:
Multimodal Interactive Lung Lesion Segmentation: A Framework for Annotating PET/CT Images Based on Physiological and Anatomical Cues. ISBI 2023: 1-5 - [c24]Jianning Li, Antonio Pepe, Gijs Luijten
, Christina Schwarz-Gsaxner, Jens Kleesiek, Jan Egger:
Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction. ShapeMI@MICCAI 2023: 1-14 - [c23]André Ferreira, Naida Solak, Jianning Li, Philipp Dammann, Jens Kleesiek, Victor Alves
, Jan Egger:
Enhanced Data Augmentation Using Synthetic Data for Brain Tumour Segmentation. BraTS/CrossMoDA@MICCAI 2023: 79-93 - [c22]Zdravko Marinov
, Rainer Stiefelhagen, Jens Kleesiek:
Guiding the Guidance: A Comparative Analysis of User Guidance Signals for Interactive Segmentation of Volumetric Images. MICCAI (3) 2023: 637-647 - [c21]Maximilian Fischer, Peter Neher
, Peter J. Schüffler, Shuhan Xiao, Silvia Dias Almeida, Constantin Ulrich, Alexander Muckenhuber, Rickmer Braren, Michael Götz, Jens Kleesiek, Marco Nolden, Klaus H. Maier-Hein:
Enhanced Diagnostic Fidelity in Pathology Whole Slide Image Compression via Deep Learning. MLMI@MICCAI (2) 2023: 427-436 - [c20]Linara Adilova, Amr Abourayya, Jianning Li, Amin Dada, Henning Petzka, Jan Egger, Jens Kleesiek, Michael Kamp:
FAM: Relative Flatness Aware Minimization. TAG-ML 2023: 37-49 - [e1]Jana Fragemann, Jianning Li, Xiao Liu, Sotirios A. Tsaftaris, Jan Egger, Jens Kleesiek:
Medical Applications with Disentanglements - First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings. Lecture Notes in Computer Science 13823, Springer 2023, ISBN 978-3-031-25045-3 [contents] - [d41]Gijs Luijten
, Christina Gsaxner
, Jianning Li
, Antonio Pepe
, Narmada Ambigapathy
, Moon Kim
, Xiaojun Chen
, Jens Kleesiek
, Frank Hölzle
, Behrus Puladi
, Jan Egger
:
3D-COSI ~ 3D Collection of Surgical Instruments. Version 1.0. Zenodo, 2023 [all versions] - [d40]Gijs Luijten
, Christina Gsaxner
, Jianning Li
, Antonio Pepe
, Narmada Ambigapathy
, Moon Kim
, Xiaojun Chen
, Jens Kleesiek
, Frank Hölzle
, Behrus Puladi
, Jan Egger
:
3D-COSI ~ 3D Collection of Surgical Instruments. Version V1.1. Zenodo, 2023 [all versions] - [i39]Verena Jasmin Hallitschke, Tobias Schlumberger, Philipp Kataliakos, Zdravko Marinov
, Moon Kim, Lars Heiliger, Constantin Seibold, Jens Kleesiek, Rainer Stiefelhagen:
Multimodal Interactive Lung Lesion Segmentation: A Framework for Annotating PET/CT Images based on Physiological and Anatomical Cues. CoRR abs/2301.09914 (2023) - [i38]Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación
, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis
, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini
, Gary S. Collins
, Keyvan Farahani, Luciana Ferrer, Adrian Galdran
, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman
, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz
, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller
, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023) - [i37]Zdravko Marinov, Rainer Stiefelhagen, Jens Kleesiek:
Guiding the Guidance: A Comparative Analysis of User Guidance Signals for Interactive Segmentation of Volumetric Images. CoRR abs/2303.06942 (2023) - [i36]Zdravko Marinov, Simon Reiß, David Kersting, Jens Kleesiek, Rainer Stiefelhagen:
Mirror U-Net: Marrying Multimodal Fission with Multi-task Learning for Semantic Segmentation in Medical Imaging. CoRR abs/2303.07126 (2023) - [i35]Constantin Seibold, Alexander Jaus, Matthias A. Fink, Moon Kim, Simon Reiß, Ken Herrmann, Jens Kleesiek, Rainer Stiefelhagen:
Accurate Fine-Grained Segmentation of Human Anatomy in Radiographs via Volumetric Pseudo-Labeling. CoRR abs/2306.03934 (2023) - [i34]Fabian Hörst
, Moritz Rempe
, Lukas Heine, Constantin Seibold, Julius Keyl, Giulia Baldini, Selma Ugurel, Jens Siveke, Barbara Grünwald, Jan Egger, Jens Kleesiek:
CellViT: Vision Transformers for Precise Cell Segmentation and Classification. CoRR abs/2306.15350 (2023) - [i33]Frederic Jonske, Moon S. Kim, Enrico Nasca, Janis Evers, Johannes Haubold, René Hosch, Felix Nensa, Michael Kamp, Constantin Seibold, Jan Egger, Jens Kleesiek:
Why does my medical AI look at pictures of birds? Exploring the efficacy of transfer learning across domain boundaries. CoRR abs/2306.17555 (2023) - [i32]Linara Adilova, Amr Abourayya, Jianning Li, Amin Dada, Henning Petzka, Jan Egger, Jens Kleesiek, Michael Kamp:
FAM: Relative Flatness Aware Minimization. CoRR abs/2307.02337 (2023) - [i31]Alexander Jaus, Constantin Seibold, Kelsey Hermann, Alexandra Walter, Kristina Giske, Johannes Haubold, Jens Kleesiek, Rainer Stiefelhagen:
Towards Unifying Anatomy Segmentation: Automated Generation of a Full-body CT Dataset via Knowledge Aggregation and Anatomical Guidelines. CoRR abs/2307.13375 (2023) - [i30]Jan Egger, Christina Gsaxner, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Puladi
:
Apple Vision Pro for Healthcare: "The Ultimate Display"? - Entering the Wonderland of Precision. CoRR abs/2308.04313 (2023) - [i29]Jianning Li, Antonio Pepe, Gijs Luijten, Christina Schwarz-Gsaxner, Jens Kleesiek, Jan Egger:
Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction. CoRR abs/2309.04956 (2023) - [i28]Tianyu Han, Sven Nebelung, Firas Khader, Tianci Wang, Gustav Mueller-Franzes, Christiane Kuhl, Sebastian Försch, Jens Kleesiek, Christoph Haarburger, Keno K. Bressem, Jakob Nikolas Kather, Daniel Truhn:
Medical Foundation Models are Susceptible to Targeted Misinformation Attacks. CoRR abs/2309.17007 (2023) - [i27]Amr Abourayya, Jens Kleesiek, Kanishka Rao, Erman Ayday, Bharat Rao, Geoffrey I. Webb, Michael Kamp:
Protecting Sensitive Data through Federated Co-Training. CoRR abs/2310.05696 (2023) - [i26]Amin Dada, Aokun Chen, Cheng Peng, Kaleb E. Smith, Ahmad Idrissi-Yaghir, Constantin Marc Seibold, Jianning Li, Lars Heiliger, Xi Yang, Christoph M. Friedrich, Daniel Truhn, Jan Egger, Jiang Bian, Jens Kleesiek, Yonghui Wu:
On the Impact of Cross-Domain Data on German Language Models. CoRR abs/2310.07321 (2023) - [i25]Kathrin Krieger, Jan Egger, Jens Kleesiek, Matthias Gunzer, Jianxu Chen:
Multimodal extended reality applications offer benefits for volumetric biomedical image analysis in research and medicine. CoRR abs/2311.03986 (2023) - [i24]Zdravko Marinov
, Paul F. Jäger, Jan Egger, Jens Kleesiek, Rainer Stiefelhagen:
Deep Interactive Segmentation of Medical Images: A Systematic Review and Taxonomy. CoRR abs/2311.13964 (2023) - [i23]Matthias Hadlich, Zdravko Marinov
, Moon S. Kim, Enrico Nasca, Jens Kleesiek, Rainer Stiefelhagen:
Sliding Window FastEdit: A Framework for Lesion Annotation in Whole-body PET Images. CoRR abs/2311.14482 (2023) - 2022
- [j5]Jan Egger
, Christina Gsaxner
, Antonio Pepe, Kelsey L. Pomykala, Frederic Jonske, Manuel Kurz, Jianning Li, Jens Kleesiek:
Medical deep learning - A systematic meta-review. Comput. Methods Programs Biomed. 221: 106874 (2022) - [c19]Constantin Marc Seibold, Simon Reiß, Jens Kleesiek, Rainer Stiefelhagen:
Reference-Guided Pseudo-Label Generation for Medical Semantic Segmentation. AAAI 2022: 2171-2179 - [c18]Maximilian Fischer, Philipp Schader, Rickmer Braren, Michael Götz, Alexander Muckenhuber, Wilko Weichert, Peter J. Schüffler, Jens Kleesiek, Jonas Scherer, Klaus Kades, Klaus H. Maier-Hein, Marco Nolden:
DICOM Whole Slide Imaging for Computational Pathology Research in Kaapana and the Joint Imaging Platform. Bildverarbeitung für die Medizin 2022: 273-278 - [c17]Constantin Marc Seibold, Simon Reiß, M. Saquib Sarfraz, Matthias A. Fink, Victoria Mayer, Jan Sellner, Moon-Sung Kim, Klaus H. Maier-Hein, Jens Kleesiek, Rainer Stiefelhagen:
Detailed Annotations of Chest X-Rays via CT Projection for Report Understanding. BMVC 2022: 58 - [c16]Chinmay Prabhakar, Anjany Sekuboyina, Hongwei Bran Li, Johannes C. Paetzold, Suprosanna Shit, Tamaz Amiranashvili, Jens Kleesiek, Bjoern H. Menze:
Structured Knowledge Graphs for Classifying Unseen Patterns in Radiographs. GeoMedIA 2022: 45-60 - [c15]Marvin Schmidt, Sebastian Gebauer, Annette Bartholmes, Dennis Kadioglu, Jens Kleesiek, Bernd Hamm, Thomas J. Vogl, Tobias Penzkofer
, Andreas Michael Bucher, Holger Storf:
CODEX Meets RACOON - A Concept for Collaborative Documentation of Clinical and Radiological COVID-19 Data. GMDS 2022: 58-65 - [c14]Jana Fragemann, Xiao Liu, Jianning Li, Sotirios A. Tsaftaris, Jan Egger, Jens Kleesiek:
Applying Disentanglement in the Medical Domain: An Introduction for the MAD Workshop. MAD@MICCAI 2022: 3-11 - [c13]Jianning Li, Jana Fragemann, Seyed-Ahmad Ahmadi, Jens Kleesiek, Jan Egger:
Training β-VAE by Aggregating a Learned Gaussian Posterior with a Decoupled Decoder. MAD@MICCAI 2022: 70-92 - [c12]Maximilian Fischer, Peter Neher
, Michael Götz, Shuhan Xiao, Silvia Dias Almeida
, Peter J. Schüffler, Alexander Muckenhuber, Rickmer Braren, Jens Kleesiek, Marco Nolden, Klaus H. Maier-Hein:
Deep Learning on Lossily Compressed Pathology Images: Adverse Effects for ImageNet Pre-trained Models. MOVI@MICCAI 2022: 73-83 - [c11]Constantin Seibold
, Simon Reiß
, M. Saquib Sarfraz, Rainer Stiefelhagen, Jens Kleesiek:
Breaking with Fixed Set Pathology Recognition Through Report-Guided Contrastive Training. MICCAI (5) 2022: 690-700 - [d39]Oscar Esteban
, Christopher J. Markiewicz
, Christopher Burns, Mathias Goncalves
, Dorota Jarecka
, Erik Ziegler
, Shoshana Berleant, David Gage Ellis
, Basile Pinsard, Cindee Madison, Michael Waskom, Michael Philipp Notter
, Daniel Clark
, Alexandre Manhães-Savio
, Dav Clark
, Kesshi Jordan
, Michael Dayan
, Yaroslav O. Halchenko
, Fred Loney, Taylor Salo
, Blake E. Dewey
, Hans J. Johnson
, Salma Bougacha, Anisha Keshavan
, Benjamin Yvernault, Carlo Hamalainen
, Horea Christian
, Rastko Ciric
, Mathieu Dubois, Michael Joseph
, Ben Cipollini
, Steven Tilley
, Matteo Visconti di Oleggio Castello
, Alejandro de la Vega
, Jason Wong, Jakub Kaczmarzyk
, Julia M. Huntenburg
, Michael G. Clark, Erin Benderoff, Drew Erickson, Maria de Fatima Dias
, James D. Kent
, Michael Hanke
, Steven Giavasis, Brendan Moloney, B. Nolan Nichols
, Rosalia Tungaraza, Andrea Dell'Orco
, Caroline Frohlich, Demian Wassermann
, Gilles de Hollander
, Serge Koudoro, Arman Eshaghi
, Jarrod Millman, Matteo Mancini
, Thomas G. Close
, Dylan M. Nielson
, Gaël Varoquaux
, Lea Waller
, Aimi Watanabe, David Mordom, Jérémy Guillon
, Timothy Robert-Fitzgerald
, Andrey Chetverikov
, Ariel Rokem
, Benjamin T. Acland
, Jessica Forbes, Ross D. Markello
, Ashley Gillman
, Fabio Bernardoni
, Xiang-Zhen Kong
, Daniel Geisler
, John Salvatore, Alexandre Gramfort
, Anna Doll
, Colin Buchanan, Elizabeth DuPre
, Siqi Liu, Alexander Schäfer
, Jens Kleesiek, Sharad Sikka, Yannick Schwartz, Ali Ghayoor
, John A. Lee
, Aaron Mattfeld, Adam C. Richie-Halford
, Franz Liem
, Martin Felipe Perez-Guevara
, Anibal Sólon Heinsfeld
, Christian Haselgrove, Joke Durnez
, Leonie Lampe, Russell Poldrack, Tristan Glatard
, Zvi Baratz
, Alejandro Tabas
, Chad Cumba, Fernando Pérez-García
, Ross Blair, Shariq N. Iqbal
, David Welch, Oliver Contier
, William Triplett
,