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Olga A. Podkolodnaya
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2010 – 2019
- 2017
- [j14]Olga A. Podkolodnaya, Natalya N. Tverdokhleb, Nikolay Podkolodnyy:
Computational modeling of the cell-autonomous mammalian circadian oscillator. BMC Syst. Biol. 11(S-1): 27-42 (2017)
2000 – 2009
- 2008
- [j13]Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko:
TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. Intell. Data Anal. 12(5): 443-461 (2008) - 2005
- [j12]Victor G. Levitsky, Aleksey V. Katokhin, Olga A. Podkolodnaya, Dagmara P. Furman, Nikolay A. Kolchanov:
NPRD: Nucleosome Positioning Region Database. Nucleic Acids Res. 33(Database-Issue): 67-70 (2005) - [j11]Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Olga A. Podkolodnaya, D. A. Rasskazov, Denis S. Miginsky, Vitali A. Likhoshvai, Alexander V. Ratushny, N. N. Podkolodnaya, Nikolay A. Kolchanov:
GeneNet in 2005. Nucleic Acids Res. 33(Database-Issue): 425-427 (2005) - 2002
- [j10]Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin:
GeneNet database: description and modeling of gene networks. Silico Biol. 2(2): 97-110 (2002) - [j9]Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko:
Transcription Regulatory Regions Database (TRRD): its status in 2002. Nucleic Acids Res. 30(1): 312-317 (2002) - [j8]Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov:
GeneNet: a database on structure and functional organisation of gene networks. Nucleic Acids Res. 30(1): 398-401 (2002) - [c2]Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvai, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, Yuri G. Matushkin:
Gene Networks Description and Modeling in the GeneNet System. Gene Regulations and Metabolism 2002: 149-179 - 2001
- [j7]Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny:
Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis. Bioinform. 17(11): 998-1010 (2001) - [j6]Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny:
Nucleosome formation potential of exons, introns, and Alu repeats. Bioinform. 17(11): 1062-1064 (2001) - 2000
- [j5]Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton:
Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Res. 28(1): 298-301 (2000)
1990 – 1999
- 1999
- [j4]Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Olga A. Podkolodnaya, Denis G. Vorobiev, Nikolay A. Kolchanov, G. Christian Overton:
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. Bioinform. 15(7): 631-643 (1999) - [j3]Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton:
Integrated databases and computer systems for studying eukaryotic gene expression. Bioinform. 15(7): 669-686 (1999) - [j2]Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko:
Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Res. 27(1): 303-306 (1999) - 1998
- [j1]T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Fedor A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov:
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. 26(1): 362-367 (1998) - [c1]Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer:
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104
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