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Michael L. Tress
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2020 – today
- 2023
- [j19]Adam Frankish
, Silvia Carbonell Sala
, Mark Diekhans
, Irwin Jungreis
, Jane E. Loveland
, Jonathan M. Mudge
, Cristina Sisu, James C. Wright, Carme Arnan
, If Barnes, Abhimanyu Banerjee
, Ruth Bennett
, Andrew E. Berry
, Alexandra Bignell, Carles Boix, Ferriol Calvet Riera
, Daniel Cerdán-Vélez, Fiona Cunningham
, Claire Davidson
, Sarah M. Donaldson
, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos García-Girón
, Jose M. Gonzalez
, Matthew Hardy, Peter W. Harrison
, Thibaut Hourlier
, Zoe Hollis
, Toby Hunt
, Benjamin James, Yunzhe Jiang
, Rory Johnson
, Mike P. Kay
, Julien Lagarde, Fergal J. Martin
, Laura Martínez Gómez
, Surag Nair
, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier
, Bianca M. Schmitt
, Jacob M. Schreiber, Emily Steed, Marie-Marthe Suner
, Dulika Sumathipala
, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass
, Yucheng T. Yang
, Andrew D. Yates
, Zahoor Zafrulla, Jyoti Choudhary
, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Anshul Kundaje
, Benedict Paten
, Michael L. Tress
, Paul Flicek
:
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Res. 51(D1): 942-949 (2023) - 2022
- [j18]Jose Manuel Rodriguez, Fernando Pozo
, Daniel Cerdán-Vélez, Tomás Di Domenico
, Jesús Vázquez, Michael L. Tress
:
APPRIS: selecting functionally important isoforms. Nucleic Acids Res. 50(D1): 54-59 (2022) - 2021
- [j17]Adam Frankish
, Mark Diekhans
, Irwin Jungreis
, Julien Lagarde
, Jane E. Loveland
, Jonathan M. Mudge
, Cristina Sisu
, James C. Wright
, Joel Armstrong, If Barnes, Andrew E. Berry
, Alexandra Bignell
, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham
, Tomás Di Domenico, Sarah M. Donaldson
, Ian T. Fiddes, Carlos García-Girón
, Jose M. Gonzalez, Tiago Grego
, Matthew Hardy
, Thibaut Hourlier
, Kevin L. Howe
, Toby Hunt
, Osagie G. Izuogu
, Rory Johnson
, Fergal J. Martin
, Laura Martínez
, Shamika Mohanan
, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo
, Ferriol Calvet Riera
, Magali Ruffier
, Bianca M. Schmitt
, Eloise Stapleton, Marie-Marthe Suner
, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu
, Yucheng T. Yang
, Andrew D. Yates
, Daniel R. Zerbino
, Yan Zhang
, Jyoti Choudhary
, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress
, Paul Flicek
:
GENCODE 2021. Nucleic Acids Res. 49(Database-Issue): D916-D923 (2021) - 2020
- [j16]Jose Manuel Rodriguez
, Fernando Pozo
, Tomás Di Domenico
, Jesús Vázquez
, Michael L. Tress
:
An analysis of tissue-specific alternative splicing at the protein level. PLoS Comput. Biol. 16(10) (2020)
2010 – 2019
- 2019
- [j15]Adam Frankish
, Mark Diekhans
, Anne-Maud Ferreira, Rory Johnson
, Irwin Jungreis
, Jane E. Loveland
, Jonathan M. Mudge
, Cristina Sisu
, James C. Wright
, Joel Armstrong, If Barnes, Andrew E. Berry
, Alexandra Bignell
, Silvia Carbonell Sala
, Jacqueline Chrast, Fiona Cunningham
, Tomás Di Domenico
, Sarah M. Donaldson
, Ian T. Fiddes, Carlos García-Girón
, Jose M. Gonzalez
, Tiago Grego
, Matthew Hardy
, Thibaut Hourlier
, Toby Hunt
, Osagie G. Izuogu
, Julien Lagarde
, Fergal J. Martin
, Laura Martínez
, Shamika Mohanan
, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo
, Magali Ruffier
, Bianca M. Schmitt
, Eloise Stapleton, Marie-Marthe Suner
, Irina Sycheva
, Barbara Uszczynska-Ratajczak, Jinrui Xu
, Andrew D. Yates
, Daniel R. Zerbino
, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary
, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond
, Michael L. Tress
, Paul Flicek
:
GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 47(Database-Issue): D766-D773 (2019) - 2018
- [j14]Jose Manuel Rodriguez, Juan Rodriguez-Rivas
, Tomás Di Domenico
, Jesús Vázquez
, Alfonso Valencia
, Michael L. Tress
:
APPRIS 2017: principal isoforms for multiple gene sets. Nucleic Acids Res. 46(Database-Issue): D213-D217 (2018) - 2015
- [j13]Federico Abascal, Michael L. Tress
, Alfonso Valencia
:
Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals. Bioinform. 31(14): 2257-2261 (2015) - [j12]Jose Manuel Rodriguez, Angel Carro, Alfonso Valencia
, Michael L. Tress
:
APPRIS WebServer and WebServices. Nucleic Acids Res. 43(Webserver-Issue): W455-W459 (2015) - [j11]Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas
, Jose Manuel Rodriguez, Angela del Pozo
, Jesús Vázquez, Alfonso Valencia
, Michael L. Tress
:
Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level. PLoS Comput. Biol. 11(6) (2015) - 2014
- [j10]Paolo Maietta
, Gonzalo López
, Angel Carro, Benjamin J. Pingilley, Leticia G. Leon, Alfonso Valencia
, Michael L. Tress
:
FireDB: a compendium of biological and pharmacologically relevant ligands. Nucleic Acids Res. 42(Database-Issue): 267-272 (2014) - 2013
- [j9]Jose Manuel Rodriguez, Paolo Maietta
, Iakes Ezkurdia, Alessandro Pietrelli
, Jan-Jaap Wesselink, Gonzalo López
, Alfonso Valencia, Michael L. Tress
:
APPRIS: annotation of principal and alternative splice isoforms. Nucleic Acids Res. 41(Database-Issue): 110-117 (2013) - 2011
- [j8]Gonzalo López
, Paolo Maietta
, Jose Manuel Rodriguez, Alfonso Valencia, Michael L. Tress
:
firestar - advances in the prediction of functionally important residues. Nucleic Acids Res. 39(Web-Server-Issue): 235-241 (2011)
2000 – 2009
- 2009
- [j7]Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli
, Rita Casadio
, Alfonso Valencia, Michael L. Tress
:
Progress and challenges in predicting protein-protein interaction sites. Briefings Bioinform. 10(3): 233-246 (2009) - 2008
- [j6]Michael L. Tress
, Jan-Jaap Wesselink, Adam Frankish
, Gonzalo López
, Nick Goldman
, Ari Löytynoja
, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow
, Alfonso Valencia:
Determination and validation of principal gene products. Bioinform. 24(1): 11-17 (2008) - 2007
- [j5]Gonzalo López
, Alfonso Valencia, Michael L. Tress
:
FireDB - a database of functionally important residues from proteins of known structure. Nucleic Acids Res. 35(Database-Issue): 219-223 (2007) - [j4]Gonzalo López
, Alfonso Valencia, Michael L. Tress
:
firestar - prediction of functionally important residues using structural templates and alignment reliability. Nucleic Acids Res. 35(Web-Server-Issue): 573-577 (2007) - 2006
- [j3]Michael L. Tress
, Domenico Cozzetto
, Anna Tramontano, Alfonso Valencia
:
An analysis of the Sargasso Sea resource and the consequences for database composition. BMC Bioinform. 7: 213 (2006) - [j2]Angel Carro, Michael L. Tress
, David de Juan
, Florencio Pazos
, Pedro Lopez-Romero, Antonio del Sol
, Alfonso Valencia, Ana María Rojas:
TreeDet: a web server to explore sequence space. Nucleic Acids Res. 34(Web-Server-Issue): 110-115 (2006) - 2004
- [j1]Michael L. Tress
, Osvaldo Graña
, Alfonso Valencia:
SQUARE-determining reliable regions in sequence alignments. Bioinform. 20(6): 974-975 (2004)
Coauthor Index
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last updated on 2024-08-05 20:18 CEST by the dblp team
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