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2020 – today
- 2023
[j10]Elisabeth Coudert
, Sebastien Gehant, Edouard De Castro, Monica Pozzato, Delphine Baratin, Teresa Batista Neto, Christian J. A. Sigrist, Nicole Redaschi, Alan J. Bridge, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Blanca Cabrera Gil, Cristina Casals-Casas, Kamal Chikh Echioukh, Béatrice A. Cuche, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Pascale Gaudet, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Arnaud Kerhornou, Philippe Le Mercier, Damien Lieberherr, Patrick Masson, Anne Morgat, Venkatesh Muthukrishnan, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Sylvain Poux, Manuela Pruess, Catherine Rivoire, Karin Sonesson, Shyamala Sundaram, Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Hema Bye-A-Jee, Austra Cukura, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Penelope Garmiri, Leonardo Jose da Costa Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Vishal Joshi, Dushyanth Jyothi, Swaathi Kandasamy, Antonia Lock, Aurelien Luciani, Marija Lugaric, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Alok Mishra, Katie Moulang, Andrew Nightingale, Sangya Pundir, Guoying Qi, Shriya Raj, Pedro Raposo, Daniel Rice, Rabie Saidi, Rafael Santos, Elena Speretta, James D. Stephenson, Prabhat Totoo, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang:
Annotation of biologically relevant ligands in UniProtKB using ChEBI. Bioinform. 39(1) (2023)- 2022
- [j9]Gabriela Alejandra Merino, Rabie Saidi, Diego H. Milone, Georgina Stegmayer, Maria Jesus Martin:
Hierarchical deep learning for predicting GO annotations by integrating protein knowledge. Bioinform. 38(19): 4488-4496 (2022) - 2021
- [j8]Alistair MacDougall, Vladimir Volynkin, Rabie Saidi, Diego Poggioli, Hermann Zellner, Emma Hatton-Ellis, Vishal Joshi, Claire O'Donovan, Sandra E. Orchard, Andrea H. Auchincloss, Delphine Baratin, Jerven T. Bolleman, Elisabeth Coudert, Edouard De Castro, Chantal Hulo, Patrick Masson, Ivo Pedruzzi, Catherine Rivoire, Cecilia N. Arighi, Qinghua Wang, Chuming Chen, Hongzhan Huang, John Garavelli, C. R. Vinayaka, Lai-Su Yeh, Darren A. Natale, Kati Laiho, Maria Jesus Martin, Alexandre Renaux, Klemens Pichler:
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. Bioinform. 36(22-23): 5562 (2021) - [j7]Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan J. Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch, Douglas Teodoro:
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49(Database-Issue): D480-D489 (2021)
2010 – 2019
- 2019
- [j6]Rabie Saidi, Wajdi Dhifli, Mondher Maddouri, Engelbert Mephu Nguifo:
Efficiently Mining Recurrent Substructures from Protein Three-Dimensional Structure Graphs. J. Comput. Biol. 26(6): 561-571 (2019) - 2016
- [j5]Tunca Dogan, Alistair MacDougall, Rabie Saidi, Diego Poggioli, Alex Bateman, Claire O'Donovan, Maria Jesus Martin:
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB. Bioinform. 32(15): 2264-2271 (2016) - [j4]Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - 2014
- [j3]Slim Bouker, Rabie Saidi, Sadok Ben Yahia, Engelbert Mephu Nguifo:
Mining Undominated Association Rules Through Interestingness Measures. Int. J. Artif. Intell. Tools 23(4) (2014) - [j2]Wajdi Dhifli, Rabie Saidi, Engelbert Mephu Nguifo:
Smoothing 3D Protein Structure Motifs Through Graph Mining and Amino Acid Similarities. J. Comput. Biol. 21(2): 162-172 (2014) - 2013
- [i3]Wajdi Dhifli, Rabie Saidi, Engelbert Mephu Nguifo:
Mining Representative Unsubstituted Graph Patterns Using Prior Similarity Matrix. CoRR abs/1303.2054 (2013) - [i2]Slim Bouker, Rabie Saidi, Sadok Ben Yahia, Engelbert Mephu Nguifo:
Towards a semantic and statistical selection of association rules. CoRR abs/1305.5824 (2013) - [i1]Wajdi Dhifli, Mohamed Moussaoui, Rabie Saidi, Engelbert Mephu Nguifo:
Towards an Efficient Discovery of the Topological Representative Subgraphs. CoRR abs/1307.7411 (2013) - 2012
- [b1]Rabie Saidi:
Motif extraction from complex data: case of protein classification. (Extraction de motifs des données complexes: cas de la classification des protéines). Blaise Pascal University, Clermont-Ferrand, France, 2012 - [c8]Wajdi Dhifli, Rabie Saidi, Engelbert Mephu Nguifo:
A novel approach for mining representative spatial motifs of proteins. BCB 2012: 506-508 - [c7]Rabie Saidi, Sabeur Aridhi, Engelbert Mephu Nguifo, Mondher Maddouri:
Feature extraction in protein sequences classification: a new stability measure. BCB 2012: 683-689 - [c6]Slim Bouker, Rabie Saidi, Sadok Ben Yahia, Engelbert Mephu Nguifo:
Ranking and Selecting Association Rules Based on Dominance Relationship. ICTAI 2012: 658-665 - 2010
- [j1]Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo:
Protein sequences classification by means of feature extraction with substitution matrices. BMC Bioinform. 11: 175 (2010) - [c5]Wajdi Dhifli, Rabie Saidi:
Protein graph repository. EGC 2010: 641-642 - [c4]Rabie Saidi, Sabeur Aridhi, Mondher Maddouri, Engelbert Mephu Nguifo:
Etude de stabilité de méthodes d'extraction de motifs à partir des séquences protéiques. EGC 2010: 703-704
2000 – 2009
- 2009
- [c3]Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo:
Comparing graph-based representations of protein for mining purposes. KDD Workshop on Statistical and Relational Learning in Bioinformatics 2009: 35-38 - 2007
- [c2]Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo:
Biological Sequences Encoding for Supervised Classification. BIRD 2007: 224-238 - [c1]Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo:
Classification supervisée de séquences biologiques basée sur les motifs et les matrices de substitution. EGC 2007: 409-420
Coauthor Index
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