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2010 – 2019
- 2011
[j18]Jinlian Wang, Manabu Torii
, Hongfang Liu, Gerald W. Hart, Zhang-Zhi Hu:
dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation. BMC Bioinform. 12: 91 (2011)- 2010
- [j17]Lanlan Yin, Guixian Xu, Manabu Torii, Zhendong Niu, José M. Maisog, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu:
Document classification for mining host pathogen protein-protein interactions. Artif. Intell. Medicine 49(3): 155-160 (2010) - [c8]Chong Min Lee, Manabu Torii, Zhang-Zhi Hu, Yi-Ting Tsai, Jinesh Shah, Hongfang Liu:
Evaluating gene/protein name tagging and mapping for article retrieval. Semantic Mining in Biomedicine 2010
2000 – 2009
- 2009
- [j16]Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu, Hongfang Liu:
Research Paper: BioTagger-GM: A Gene/Protein Name Recognition System. J. Am. Medical Informatics Assoc. 16(2): 247-255 (2009) - [c7]Manabu Torii, Hongfang Liu, Zhang-Zhi Hu:
Support Vector Machine-Based Mucin-Type O-linked Glycosylation Site Prediction Using Enhanced Sequence Feature Encoding. AMIA 2009 - [c6]Paul Caravelli, Mitchell Beard, Brian Gopalan, Lisa Singh, Zhang-Zhi Hu:
Generating Abstract Networks Using Multi-relational Biological Data. IV 2009: 331-336 - [p2]Meenakshi Narayanaswamy, K. E. Ravikumar, Zhang-Zhi Hu, K. Vijay-Shanker, Cathy H. Wu:
Information Extraction of Protein Phosphorylation from Biomedical Literature. Information Retrieval in Biomedicine 2009: 163-176 - 2008
- [c5]Guixian Xu, Lanlan Yin, Manabu Torii, Zhendong Niu, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu:
Document Classification for Mining Host Pathogen Protein-Protein Interactions. BIBM 2008: 461-466 - [c4]Zhang-Zhi Hu, K. Bretonnel Cohen, Lynette Hirschman, Alfonso Valencia, Hongfang Liu, Michelle G. Giglio, Cathy H. Wu:
iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology. BIBM 2008: 467-472 - [c3]Hongfang Liu, Manabu Torii, Guixian Xu, Zhang-Zhi Hu, Johannes Goll:
Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature. BioLINK@ISMB/ECCB 2008: 62-70 - [p1]Katherine G. Herbert, Junilda Spirollari, Jason Tsong-Li Wang, William H. Piel, John D. Westbrook, Winona C. Barker, Zhang-Zhi Hu, Cathy H. Wu:
Bioinformatic Databases. Wiley Encyclopedia of Computer Science and Engineering 2008 - 2007
- [j15]Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu:
Dependence network modeling for biomarker identification. Bioinform. 23(2): 198-206 (2007) - [j14]Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Ti-Cheng Chang, Zhang-Zhi Hu, Hongfang Liu, Barry Smith, Cathy H. Wu:
Framework for a Protein Ontology. BMC Bioinform. 8(S-9) (2007) - [j13]Manabu Torii, Zhang-Zhi Hu, Min Song, Cathy H. Wu, Hongfang Liu:
A comparison study on algorithms of detecting long forms for short forms in biomedical text. BMC Bioinform. 8(S-9) (2007) - [c2]Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu:
Mapping Gene/Protein Names in Free Text to Biomedical Databases. ICDM Workshops 2007: 101-106 - 2006
- [j12]Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy H. Wu:
BioThesaurus: a web-based thesaurus of protein and gene names. Bioinform. 22(1): 103-105 (2006) - [j11]X. Yuan, Zhang-Zhi Hu, H. T. Wu, Manabu Torii, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu:
An online literature mining tool for protein phosphorylation. Bioinform. 22(13): 1668-1669 (2006) - [j10]Bo Han, Zoran Obradovic, Zhang-Zhi Hu, Cathy H. Wu, Slobodan Vucetic:
Substring selection for biomedical document classification. Bioinform. 22(17): 2136-2142 (2006) - [j9]Hongfang Liu, Zhang-Zhi Hu, Manabu Torii, Cathy H. Wu, Carol Friedman:
Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging. J. Am. Medical Informatics Assoc. 13(5): 497-507 (2006) - 2005
- [j8]Zhang-Zhi Hu, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu:
Literature mining and database annotation of protein phosphorylation using a rule-based system. Bioinform. 21(11): 2759-2765 (2005) - [j7]Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu:
DynGO: a tool for visualizing and mining of Gene Ontology and its associations. BMC Bioinform. 6: 201 (2005) - [c1]Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu:
Dynamically Generating a Protein Entity Dictionary Using Online Resources. ACL 2005: 17-20 - 2004
- [j6]Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker:
The iProClass integrated database for protein functional analysis. Comput. Biol. Chem. 28(1): 87-96 (2004) - [j5]Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu:
iProLINK: an integrated protein resource for literature mining. Comput. Biol. Chem. 28(5-6): 409-416 (2004) - [j4]Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu:
The PIR integrated protein databases and data retrieval system. Data Sci. J. 3: 163-174 (2004) - [j3]Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker:
PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 32(Database-Issue): 112-114 (2004) - 2003
- [j2]Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker:
The Protein Information Resource. Nucleic Acids Res. 31(1): 345-347 (2003) - 2002
- [j1]Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker:
The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res. 30(1): 35-37 (2002)
Coauthor Index
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