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Jonathan P. K. Doye

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2020 – today

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2022
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  - journals/corr/abs-2205-01563
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Ian Seet, Thomas E. Ouldridge, Jonathan P. K. Doye:
Simulation of reversible molecular mechanical logic gates and circuits. CoRR abs/2205.01563 (2022)

2010 – 2019

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2019
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Antonio Suma, Erik Poppleton, Michael Matthies, Petr Sulc, Flavio Romano, Ard A. Louis, Jonathan P. K. Doye, Cristian Micheletti, Lorenzo Rovigatti:
TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami. J. Comput. Chem. 40(29): 2586-2595 (2019)
2014
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Petr Sulc, Thomas E. Ouldridge, Flavio Romano, Jonathan P. K. Doye, Ard A. Louis:
Simulating a burnt-bridges DNA motor with a coarse-grained DNA model. Nat. Comput. 13(4): 535-547 (2014)

2000 – 2009

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2004
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Jonathan P. K. Doye, Robert H. Leary, Marco Locatelli, Fabio Schoen:
Global Optimization of Morse Clusters by Potential Energy Transformations. INFORMS J. Comput. 16(4): 371-379 (2004)

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