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HyeongSik Kim

Hyeongsik Kim

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affiliation: Bosch, Sunnyvale, CA, USA

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Journal Articles

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2024
[j6]
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Hyeongsik Kim, Seungjin Han, Youngseop Kim:
LFDA: A Framework for Light Field Depth Estimation With Depth Attention. IEEE Access 12: 65032-65040 (2024)
[j5]
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J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, Hyeongsik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinform. 40(3) (2024)
2022
[j4]
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Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022)
[j3]
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Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022)
2013
[j2]
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Kemafor Anyanwu, HyeongSik Kim, Padmashree Ravindra:
Algebraic Optimization for Processing Graph Pattern Queries in the Cloud. IEEE Internet Comput. 17(2): 52-61 (2013)
2011
[j1]
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HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu:
From SPARQL to MapReduce: The Journey Using a Nested TripleGroup Algebra. Proc. VLDB Endow. 4(12): 1426-1429 (2011)

Conference and Workshop Papers

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2023
[c18]
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Naoki Otani, Jun Araki, HyeongSik Kim, Eduard H. Hovy:
A Textual Dataset for Situated Proactive Response Selection. ACL (1) 2023: 3856-3874
[c17]
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Nicolas Matentzoglu, Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris, Emily Hartley, Harshad B. Hegde, Sven Hertling, Charles Tapley Hoyt, Hyeongsik Kim, Huanyu Li, James A. McLaughlin, Cássia Trojahn, Nicole A. Vasilevsky, Christopher J. Mungall:
A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling. OM@ISWC 2023: 73-78
2022
[c16]
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Nicolas Matentzoglu, Joe E. Flack, John Graybeal, Nomi L. Harris, Harshad B. Hegde, Charles Tapley Hoyt, Hyeongsik Kim, Sabrina Toro, Nicole A. Vasilevsky, Christopher J. Mungall:
A simple standard for ontological mappings 2022: updates of data model and outlook. OM@ISWC 2022: 61-66
[c15]
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Sola S. Shirai, HyeongSik Kim:
EaT-PIM: Substituting Entities in Procedural Instructions Using Flow Graphs and Embeddings. ISWC 2022: 161-178
2021
[c14]
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Monireh Ebrahimi, Md. Kamruzzaman Sarker, Federico Bianchi, Ning Xie, Aaron Eberhart, Derek Doran, HyeongSik Kim, Pascal Hitzler:
Neuro-Symbolic Deductive Reasoning for Cross-Knowledge Graph Entailment. AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering 2021
2019
[c13]
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HyeongSik Kim, Abhisha Bhattacharyya, Kemafor Anyanwu:
Semantic query transformations for increased parallelization in distributed knowledge graph query processing. SC 2019: 4:1-4:14
2018
[c12]
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Avimanyu Mukhopadhyay, HyeongSik Kim, Kemafor Anyanwu:
Scalable Exploratory Search on Knowledge Graphs Using Apache Spark. WETICE 2018: 154-159
2017
[c11]
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HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu:
A semantics-aware storage framework for scalable processing of knowledge graphs on Hadoop. IEEE BigData 2017: 193-202
[c10]
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HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu:
Type-based Semantic Optimization for Scalable RDF Graph Pattern Matching. WWW 2017: 785-793
2016
[c9]
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Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu:
Optimization of Complex SPARQL Analytical Queries. EDBT 2016: 257-268
2015
[c8]
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Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu:
Rewriting complex SPARQL analytical queries for efficient cloud-based processing. IEEE BigData 2015: 32-37
2014
[c7]
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HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu:
A Semantics-Oriented Storage Model for Big Heterogeneous RDF Data. ISWC (Posters & Demos) 2014: 437-440
2013
[c6]
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HyeongSik Kim, Kemafor Anyanwu:
Optimizing queries over semantically integrated datasets on MapReduce platforms. IEEE BigData 2013: 5-6
[c5]
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Haizhou Fu, HyeongSik Kim, Kemafor Anyanwu:
Scaling concurrency of personalized Semantic search over Large RDF data. IEEE BigData 2013: 556-562
[c4]
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HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu:
Optimizing RDF(S) queries on cloud platforms. WWW (Companion Volume) 2013: 261-264
2012
[c3]
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HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu:
Scan-Sharing for Optimizing RDF Graph Pattern Matching on MapReduce. IEEE CLOUD 2012: 139-146
[c2]
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Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu:
To nest or not to nest, when and how much: representing intermediate results of graph pattern queries in MapReduce based processing. SWIM 2012: 5
2011
[c1]
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Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu:
An Intermediate Algebra for Optimizing RDF Graph Pattern Matching on MapReduce. ESWC (2) 2011: 46-61

Parts in Books or Collections

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2014
[p1]
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Kemafor Anyanwu, Padmashree Ravindra, HyeongSik Kim:
Algebraic Optimization of RDF Graph Pattern Queries on MapReduce. Large Scale and Big Data 2014: 183-228

Informal and Other Publications

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2023
[i6]
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  - journals/corr/abs-2304-02711
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J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, HyeongSik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning. CoRR abs/2304.02711 (2023)
[i5]
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  - journals/corr/abs-2305-13338
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Marcin P. Joachimiak, J. Harry Caufield, Nomi L. Harris, Hyeongsik Kim, Christopher J. Mungall:
Gene Set Summarization using Large Language Models. CoRR abs/2305.13338 (2023)
[i4]
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  - journals/corr/abs-2310-03666
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Nicolas Matentzoglu, J. Harry Caufield, Harshad B. Hegde, Justin T. Reese, Sierra A. T. Moxon, Hyeongsik Kim, Nomi L. Harris, Melissa A. Haendel, Christopher J. Mungall:
MapperGPT: Large Language Models for Linking and Mapping Entities. CoRR abs/2310.03666 (2023)
2022
[i3]
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  - journals/corr/abs-2207-02056
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Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022)
2021
[i2]
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  - journals/corr/abs-2112-07051
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Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021)
2016
[i1]
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HyeongSik Kim, Kemafor Anyanwu:
Scalable Ontological Query Processing over Semantically Integrated Life Science Datasets using MapReduce. CoRR abs/1602.01040 (2016)

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