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2020 – today
- 2022
[j27]Dimitri Höhler
, Wayne Pfeiffer, Vassilios Ioannidis, Heinz Stockinger, Alexandros Stamatakis:
RAxML Grove: an empirical phylogenetic tree database. Bioinform. 38(6): 1741-1742 (2022)- 2021
- [j26]Severine Duvaud, Chiara Gabella, Frédérique Lisacek, Heinz Stockinger, Vassilios Ioannidis, Christine Durinx:
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. Nucleic Acids Res. 49(Webserver-Issue): 216-227 (2021) - 2020
- [j25]Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre:
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36(8): 2636-2642 (2020) - [c26]Diana Coman Schmid, Katrin Crameri, Sabine Oesterle, Bernd Rinn, Thierry Sengstag, Heinz Stockinger, Leila T. Alexander, Jonathan Barda, Christian Bolliger, Urban Borstnik, Gerhard Bräunlich, Olivier Byrde, Jérôme Dauvillier, Robin Engler, Pablo Escobar Lopez, Volker Flegel, Martin Fox, Sofia Georgakopoulou, Jani Heikkinen, Martin Jacquot, Nicolas Kowenski, Guillermo Losilla, Sergio Maffioletti, Jorge Molina, Diego Moreno, Allen Neeser, Michal Okoniewski, Warren Paulus, Kevin Sayers, Torsten Schwede, Jaroslaw Surkont, Richard Wartenburger, Thomas Wüst:
SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data. MIE 2020: 1170-1174
2010 – 2019
- 2019
- [j24]Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson-Rechavi, Christophe Dessimoz:
Enabling semantic queries across federated bioinformatics databases. Database J. Biol. Databases Curation 2019: baz106 (2019) - 2018
- [i8]Erich Schikuta, Helmut Wanek, Heinz Stockinger, Kurt Stockinger, Thomas Fürle, Oliver Jorns, Christoph Löffelhardt, Peter Brezany, Minh Dang, Thomas A. Mück:
ViPIOS - VIenna Parallel Input Output System: Language, Compiler and Advanced Data Structure Support for Parallel I/O Operations. CoRR abs/1808.01166 (2018) - 2016
- [j23]Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - 2015
- [j22]Elke Schaper, Alexander Korsunsky, Julija Pecerska, Antonio Messina, Riccardo Murri, Heinz Stockinger, Stefan Zoller, Ioannis Xenarios, Maria Anisimova:
TRAL: tandem repeat annotation library. Bioinform. 31(18): 3051-3053 (2015) - [j21]Linda Dib, Xavier Meyer, Panu Artimo, Vassilios Ioannidis, Heinz Stockinger, Nicolas Salamin:
Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree. BMC Bioinform. 16: 394:1-394:7 (2015) - 2014
- [j20]Mario Valle, Hannes Schabauer, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Nicolas Salamin:
Optimization strategies for fast detection of positive selection on phylogenetic trees. Bioinform. 30(8): 1129-1137 (2014) - [j19]Sébastien Moretti, Balazs Laurenczy, Walid H. Gharib, Briséïs Castella, Arnold Kuzniar, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin, Heinz Stockinger, Marc Robinson-Rechavi:
Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Res. 42(Database-Issue): 917-921 (2014) - [j18]Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - [i7]Peter Z. Kunszt, Sergio Maffioletti, Dean Flanders, Markus Eurich, Thomas Michael Bohnert, Andrew Edmonds, Heinz Stockinger, Sigve Haug, Almerima Jamakovic-Kapic, Placi Flury, Simon Leinen, Eryk Schiller:
Towards a Swiss National Research Infrastructure. CoRR abs/1404.7608 (2014) - 2013
- [c25]Peter Z. Kunszt, Sergio Maffioletti, Dean Flanders, Markus Eurich, Eryk Schiller, Thomas Michael Bohnert, Andy Edmonds, Heinz Stockinger, Almerima Jamakovic-Kapic, Sigve Haug, Placi Flury, Simon Leinen:
Towards a Swiss National Research Infrastructure. Euro-Par Workshops 2013: 157-166 - 2012
- [j17]Thorsten Kleinjung, Joppe W. Bos, Arjen K. Lenstra, Dag Arne Osvik, Kazumaro Aoki, Scott Contini, Jens Franke, Emmanuel Thomé, Pascal Jermini, Michela Thiémard, Paul C. Leyland, Peter L. Montgomery, Andrey Timofeev, Heinz Stockinger:
A heterogeneous computing environment to solve the 768-bit RSA challenge. Clust. Comput. 15(1): 53-68 (2012) - [j16]Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi, Edouard De Castro, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger, Aurélien Grosdidier, Céline Hernandez, Vassilios Ioannidis, Dmitri Kuznetsov, Robin Liechti, Sébastien Moretti, Khaled Mostaguir, Nicole Redaschi, Grégoire Rossier, Ioannis Xenarios, Heinz Stockinger:
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40(Web-Server-Issue): 597-603 (2012) - [c24]Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger:
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. HealthGrid 2012: 59-68 - [c23]Hannes Schabauer, Mario Valle, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Ziheng Yang, Nicolas Salamin:
SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model. IPDPS Workshops 2012: 706-714 - [i6]Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger:
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. CoRR abs/1203.3092 (2012) - 2010
- [j15]Gianni Pucciani, Andrea Domenici, Flavia Donno, Heinz Stockinger:
A performance study on the synchronisation of heterogeneous Grid databases using CONStanza. Future Gener. Comput. Syst. 26(6): 820-834 (2010) - [j14]Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, Jose Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend:
The EMBRACE web service collection. Nucleic Acids Res. 38(Web-Server-Issue): 683-688 (2010) - [c22]Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi, Heinz Stockinger, Dean Flanders:
Phylogenetic Code in the Cloud - Can it Meet the Expectations? HealthGrid 2010: 55-63
2000 – 2009
- 2009
- [j13]George A. Gravvanis, John P. Morrison, Heinz Stockinger:
Special Section: Defining the grid, experiences and future trends. Future Gener. Comput. Syst. 25(4): 399-400 (2009) - [j12]Heinz Stockinger, Alexander F. Auch, Markus Göker, Jan P. Meier-Kolthoff, Alexandros Stamatakis:
Large-Scale Co-Phylogenetic Analysis on the Grid. Int. J. Grid High Perform. Comput. 1(1): 39-54 (2009) - [i5]Erich Schikuta, Thomas Weishäupl, Flavia Donno, Heinz Stockinger, Elisabeth Vinek, Helmut Wanek, Christoph Witzany, Irfan Ul Haq:
Business in the Grid. CoRR abs/0909.2055 (2009) - 2008
- [j11]Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro L. Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman:
Experience using web services for biological sequence analysis. Briefings Bioinform. 9(6): 493-505 (2008) - [c21]Nabil Abdennadher, Peter Engel, Derek Feichtinger, Dean Flanders, Placi Flury, Sigve Haug, Pascal Jermini, Sergio Maffioletti, Cesare Pautasso, Heinz Stockinger, Wibke Sudholt, Michela Thiémard, Nadya Williams, Christoph Witzig:
Initializing a National Grid Infrastructure - Lessons Learned from the Swiss National Grid Association Seed Project. CCGRID 2008: 169-176 - [c20]Marco Pagni, Jörg Hau, Heinz Stockinger:
A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML. CCGRID 2008: 728-734 - 2007
- [j10]Richard McClatchey, Ashiq Anjum, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas:
Data Intensive and Network Aware (DIANA) Grid Scheduling. J. Grid Comput. 5(1): 43-64 (2007) - [j9]Heinz Stockinger:
Defining the grid: a snapshot on the current view. J. Supercomput. 42(1): 3-17 (2007) - [i4]Ashiq Anjum, Richard McClatchey, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas, Muhammad Sagheer, Khawar Hasham, Omer Alvi:
DIANA Scheduling Hierarchies for Optimizing Bulk Job Scheduling. CoRR abs/0707.0743 (2007) - [i3]Richard McClatchey, Ashiq Anjum, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas:
Scheduling in Data Intensive and Network Aware (DIANA) Grid Environments. CoRR abs/0707.0862 (2007) - 2006
- [j8]Heinz Stockinger:
Grid Computing: A Critical Discussion on Business Applicability. IEEE Distributed Syst. Online 7(6) (2006) - [c19]Andrea Domenici, Flavia Donno, Gianni Pucciani, Heinz Stockinger:
Relaxed Data Consistency with CONStanza. CCGRID 2006: 425-429 - [c18]Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, Laurent Falquet:
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems. e-Science 2006: 58 - [c17]Ashiq Anjum, Richard McClatchey, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas, Muhammad Sagheer, Khawar Hasham, Omer Alvi:
DIANA Scheduling Hierarchies for Optimizing Bulk Job Scheduling. e-Science 2006: 89 - [c16]Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede:
The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned. e-Science 2006: 148 - [c15]Siegfried Benkner, Heinz Stockinger:
Grid Data Management: Minisymposium Abstract. PARA 2006: 297 - 2005
- [j7]Erwin Laure, Heinz Stockinger, Kurt Stockinger:
Performance engineering in data Grids. Concurr. Pract. Exp. 17(2-4): 171-191 (2005) - [j6]Peter Z. Kunszt, Erwin Laure, Heinz Stockinger, Kurt Stockinger:
File-based replica management. Future Gener. Comput. Syst. 21(1): 115-123 (2005) - [c14]Heinz Stockinger, Flavia Donno, Giulio Eulisse, Mirco Mazzucato, Conrad Steenberg:
Matchmaking, Datasets and Physics Analysis. ICPP Workshops 2005: 21-28 - 2004
- [j5]Heinz Stockinger:
Editorial. J. Grid Comput. 2(1): 1 (2004) - [j4]David G. Cameron, James Casey, Leanne Guy, Peter Z. Kunszt, Sophie Lemaitre, Gavin McCance, Heinz Stockinger, Kurt Stockinger, Giuseppe Andronico, William H. Bell, Itzhak Ben-Akiva, Diana Bosio, Radovan Chytracek, Andrea Domenici, Flavia Donno, Wolfgang Hoschek, Erwin Laure, Levi Lucio, A. Paul Millar, Livio Salconi, Ben Segal, Mika Silander:
Replica Management in the European DataGrid Project. J. Grid Comput. 2(4): 341-351 (2004) - [c13]Heinz Stockinger, Flavia Donno, Roberto Puccinelli, Kurt Stockinger:
Data Grid tutorials with hands-on experience. CCGRID 2004: 152-159 - [c12]Paul Graham, Matti Heikkurinen, Jarek Nabrzyski, Ariel Oleksiak, Mark Parsons, Heinz Stockinger, Kurt Stockinger, Maciej Stroinski, Jan Weglarz:
EU Funded Grid Development in Europe. European Across Grids Conference 2004: 1-10 - [c11]Andrew Hanushevsky, Heinz Stockinger:
A Proxy Service for the xrootd Data Server. SAG 2004: 38-49 - 2003
- [c10]Kurt Stockinger, Heinz Stockinger, Lukasz Dutka, Renata Slota, Darin Nikolow, Jacek Kitowski:
Access Cost Estimation for Unified Grid Storage Systems. GRID 2003: 149-157 - [c9]Peter Z. Kunszt, Erwin Laure, Heinz Stockinger, Kurt Stockinger:
Advanced Replica Management with Reptor. PPAM 2003: 848-855 - [e1]Heinz Stockinger:
4th International Workshop on Grid Computing (GRID 2003), 17 November 2003, Phoenix, AZ, USA, Proceedings. IEEE Computer Society 2003, ISBN 0-7695-2026-X [contents] - [i2]Heinz Stockinger, Flavia Donno, Erwin Laure, Shahzad Muzaffar, Peter Z. Kunszt, Giuseppe Andronico, A. Paul Millar:
Grid Data Management in Action: Experience in Running and Supporting Data Management Services in the EU DataGrid Project. CoRR cs.DC/0306011 (2003) - 2002
- [j3]Heinz Stockinger, Asad Samar, Koen Holtman, William E. Allcock, Ian T. Foster, Brian Tierney:
File and Object Replication in Data Grids. Clust. Comput. 5(3): 305-314 (2002) - [j2]Rajkumar Buyya, David Abramson, Jonathan Giddy, Heinz Stockinger:
Economic models for resource management and scheduling in Grid computing. Concurr. Comput. Pract. Exp. 14(13-15): 1507-1542 (2002) - [j1]Heinz Stockinger, Asad Samar, Shahzad Muzaffar, Flavia Donno:
Grid Data Mirroring Package (GDMP). Sci. Program. 10(2): 121-133 (2002) - [c8]Heinz Stockinger, Andrew Hanushevsky:
HTTP redirection for replica catalogue lookups in data grids. SAC 2002: 882-889 - [c7]Ann L. Chervenak, Ewa Deelman, Ian T. Foster, Leanne Guy, Wolfgang Hoschek, Adriana Iamnitchi, Carl Kesselman, Peter Z. Kunszt, Matei Ripeanu, Robert Schwartzkopf, Heinz Stockinger, Kurt Stockinger, Brian Tierney:
Giggle: a framework for constructing scalable replica location services. SC 2002: 9:1-9:17 - 2001
- [c6]Heinz Stockinger, Omer F. Rana, Reagan W. Moore, André Merzky:
Data Management for Grid Environments. HPCN Europe 2001: 151-160 - [c5]Dirk Düllmann, Wolfgang Hoschek, Francisco Javier Jaén-Martínez, Ben Segal, Heinz Stockinger, Kurt Stockinger, Asad Samar:
Models for Replica Synchronisation and Consistency in a Data Grid. HPDC 2001: 67-75 - [c4]Heinz Stockinger, Asad Samar, Koen Holtman, William E. Allcock, Ian T. Foster, Brian Tierney:
File and Object Replication in Data Grids. HPDC 2001: 76-86 - [c3]Heinz Stockinger:
Distributed Database Management Systems and the Data Grid. MSS 2001: 1-12 - [c2]Heinz Stockinger, Kurt Stockinger, Erich Schikuta, Ian Willers:
Towards a Cost Model for Distributed and Replicated Data Stores. PDP 2001: 461-467 - [i1]Rajkumar Buyya, Heinz Stockinger, Jonathan Giddy, David Abramson:
Economic Models for Management of Resources in Grid Computing. CoRR cs.DC/0106020 (2001) - 2000
- [c1]Wolfgang Hoschek, Francisco Javier Jaén-Martínez, Asad Samar, Heinz Stockinger, Kurt Stockinger:
Data Management in an International Data Grid Project. GRID 2000: 77-90
Coauthor Index
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