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ORCIDRafael S. Gonçalves 0001
Person information
- affiliation: Harvard Medical School, Boston, MA, USA
- affiliation (2014 - 2021): Stanford University, CA, USA
- affiliation (PhD 2014): University of Manchester, UK
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2020 – today
- 2024
[i8]Rafael S. Gonçalves, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman:
The text2term tool to map free-text descriptions of biomedical terms to ontologies. CoRR abs/2407.02626 (2024)- [i7]Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane:
Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. CoRR abs/2407.08874 (2024) - 2022
- [j3]Romana Pernisch
, Daniele Dell'Aglio, Mirko Serbak, Rafael S. Gonçalves, Abraham Bernstein:
Visualising the effects of ontology changes and studying their understanding with ChImp. J. Web Semant. 74: 100715 (2022) - [c29]Simon Curty, Hans-Georg Fill, Rafael S. Gonçalves, Mark A. Musen:
An Architecture for Attesting to the Provenance of Ontologies Using Blockchain Technologies. BMSD 2022: 182-199 - 2021
- [c28]Simon Curty, Hans-Georg Fill, Rafael S. Gonçalves, Mark A. Musen:
A WebProtégé Plugin for Attesting to the Provenance of Ontologies on the Ethereum Blockchain. ISWC (Posters/Demos/Industry) 2021 - 2020
- [e4]Kerry L. Taylor, Rafael S. Gonçalves, Freddy Lécué, Jun Yan:
Proceedings of the ISWC 2020 Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 19th International Semantic Web Conference (ISWC 2020), Globally online, November 1-6, 2020 (UTC). CEUR Workshop Proceedings 2721, CEUR-WS.org 2020 [contents]
2010 – 2019
- 2019
- [c27]Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen:
Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings. ESWC 2019: 146-161 - [c26]Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple:
Use of OWL and Semantic Web Technologies at Pinterest. ISWC (2) 2019: 418-435 - [c25]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
WebProtégé: A Cloud-Based Ontology Editor. WWW (Companion Volume) 2019: 686-689 - [i6]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Mark A. Musen:
WebProtégé: A Cloud-Based Ontology Editor. CoRR abs/1902.08251 (2019) - [i5]Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen:
Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings. CoRR abs/1903.08206 (2019) - [i4]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. CoRR abs/1905.06480 (2019) - [i3]Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple:
Use of OWL and Semantic Web Technologies at Pinterest. CoRR abs/1907.02106 (2019) - 2018
- [c24]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
Protégé 5.5 - Improvements for Editing Biomedical Ontologies. ICBO 2018 - [c23]Rafael S. Gonçalves, Csongor I. Nyulas, Marcos Martínez Romero, Martin J. O'Connor, John Graybeal, Mark A. Musen:
Using Ontologies to Drive the Creation of High-Quality Metadata in CEDAR. ISWC (P&D/Industry/BlueSky) 2018 - [c22]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
WebProtégé 3.0 - Collaborative OWL Ontology Engineering in the Cloud. ISWC (P&D/Industry/BlueSky) 2018 - [i2]Rafael S. Gonçalves, Mark A. Musen:
The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments. CoRR abs/1808.06907 (2018) - 2017
- [j2]Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen:
An ontology-driven tool for structured data acquisition using Web forms. J. Biomed. Semant. 8(1): 26:1-26:14 (2017) - [j1]Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller:
The OWL Reasoner Evaluation (ORE) 2015 Competition Report. J. Autom. Reason. 59(4): 455-482 (2017) - [c21]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, John Graybeal, Mark A. Musen:
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. SemSci@ISWC 2017: 39-46 - [c20]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. ISWC (2) 2017: 103-110 - [i1]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, John Graybeal, Mark A. Musen:
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. CoRR abs/1708.01286 (2017) - 2016
- [c19]Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller:
The OWL Reasoner Evaluation (ORE) 2015 Resources. ISWC (2) 2016: 159-167 - [e3]Valentina A. M. Tamma, Mauro Dragoni, Rafael S. Gonçalves, Agnieszka Lawrynowicz:
Ontology Engineering - 12th International Experiences and Directions Workshop on OWL, OWLED 2015, co-located with ISWC 2015, Bethlehem, PA, USA, October 9-10, 2015, Revised Selected Papers. Lecture Notes in Computer Science 9557, Springer 2016, ISBN 978-3-319-33244-4 [contents] - 2015
- [c18]Ray W. Fergerson, Paul R. Alexander, Michael Dorf, Rafael S. Gonçalves, Manuel Salvadores, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen:
NCBO BioPortal version 4. ICBO 2015 - [c17]Rafael S. Gonçalves, Csongor I. Nyulas, Samson W. Tu, Mark A. Musen:
OWL-based form generation and structured data acquisition. ICBO 2015 - [c16]Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen:
Structured data acquisition with ontology-based web forms. ICBO 2015 - [c15]Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller:
The OWL Reasoner Evaluation (ORE) 2015 Competition Report. SSWS@ISWC 2015: 2-15 - [e2]Michel Dumontier, Birte Glimm, Rafael S. Gonçalves, Matthew Horridge, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Giorgos B. Stamou, Giorgos Stoilos:
Informal Proceedings of the 4th International Workshop on OWL Reasoner Evaluation (ORE-2015) co-located with the 28th International Workshop on Description Logics (DL 2015), Athens, Greece, June 6, 2015. CEUR Workshop Proceedings 1387, CEUR-WS.org 2015 [contents] - 2014
- [b1]João Rafael Landeiro de Sousa Gonçalves:
Impact analysis in description logic ontologies. University of Manchester, UK, 2014 - 2013
- [c14]Rafael S. Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
The Empirical Robustness of Description Logic Classification. Description Logics 2013: 197-208 - [c13]Maria Copeland, Rafael S. Gonçalves, Bijan Parsia, Uli Sattler, Robert Stevens:
Finding fault: detecting issues in a versioned ontology. WoDOOM 2013: 9-20 - [c12]Maria Copeland, Rafael S. Gonçalves, Bijan Parsia, Uli Sattler, Robert Stevens:
Finding Fault: Detecting Issues in a Versioned Ontology. ESWC (Satellite Events) 2013: 113-124 - [c11]Rafael S. Gonçalves, Samantha Bail, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Birte Glimm, Yevgeny Kazakov:
OWL Reasoner Evaluation (ORE) Workshop 2013 Results: Short Report. ORE 2013: 1-18 - [c10]Rafael S. Gonçalves, Bijan Parsia, Uli Sattler:
Comparing Ontologies with ecco. ISWC (Posters & Demos) 2013: 49-52 - [c9]Rafael S. Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
The Empirical Robustness of Description Logic Classification. ISWC (Posters & Demos) 2013: 277-280 - [e1]Samantha Bail, Birte Glimm, Rafael S. Gonçalves, Ernesto Jiménez-Ruiz, Yevgeny Kazakov, Nicolas Matentzoglu, Bijan Parsia:
Informal Proceedings of the 2nd International Workshop on OWL Reasoner Evaluation (ORE-2013), Ulm, Germany, July 22, 2013. CEUR Workshop Proceedings 1015, CEUR-WS.org 2013 [contents] - 2012
- [c8]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Concept-Based Semantic Difference in Expressive Description Logics. Description Logics 2012 - [c7]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Ecco: A Hybrid Diff Tool for OWL 2 ontologies. OWLED 2012 - [c6]Samantha Bail, Sandra Alkiviadous, Bijan Parsia, David Workman, Mark van Harmelen, Rafael S. Gonçalves, Cristina Garilao:
FishMark: A Linked Data Application Benchmark. SSWS+HPCSW@ISWC 2012: 1-15 - [c5]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Performance Heterogeneity and Approximate Reasoning in Description Logic Ontologies. ISWC (1) 2012: 82-98 - [c4]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Concept-Based Semantic Difference in Expressive Description Logics. ISWC (1) 2012: 99-115 - 2011
- [c3]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Analysing the evolution of the NCI Thesaurus. CBMS 2011: 1-6 - [c2]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Categorising logical differences between OWL ontologies. CIKM 2011: 1541-1546 - [c1]Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler:
Analysing Multiple Versions of an Ontology: A Study of the NCI Thesaurus. Description Logics 2011
Coauthor Index
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