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Sergey A. Samsonov
Person information
- affiliation: University of Gdansk, Poland
- affiliation (former): TU Dresden, Structural Bioinformatics, Germany
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2020 – today
- 2024
- [j17]Sebastian Anila, Sergey A. Samsonov
:
Benchmarking Water Models in Molecular Dynamics of Protein-Glycosaminoglycan Complexes. J. Chem. Inf. Model. 64(5): 1691-1703 (2024) - 2023
- [j16]Mateusz Marcisz, Sergey A. Samsonov
:
Solvent Model Benchmark for Molecular Dynamics of Glycosaminoglycans. J. Chem. Inf. Model. 63(7): 2147-2157 (2023) - 2022
- [j15]Annemarie Danielsson
, Malgorzata M. Kogut, Martyna Maszota-Zieleniak
, Pradeep Chopra, Geert-Jan Boons
, Sergey A. Samsonov:
Molecular dynamics-based descriptors of 3-O-Sulfated Heparan sulfate as contributors of protein binding specificity. Comput. Biol. Chem. 99: 107716 (2022) - [j14]Malgorzata M. Kogut, Annemarie Danielsson
, Sylvie Ricard-Blum
, Sergey A. Samsonov:
Impact of calcium ions on the structural and dynamic properties of heparin oligosaccharides by computational analysis. Comput. Biol. Chem. 99: 107727 (2022) - [j13]Mateusz Marcisz, Margrethe Gaardløs
, Krzysztof K. Bojarski, Till Siebenmorgen, Martin Zacharias, Sergey A. Samsonov
:
Explicit solvent repulsive scaling replica exchange molecular dynamics (RS-REMD) in molecular modeling of protein-glycosaminoglycan complexes. J. Comput. Chem. 43(24): 1633-1640 (2022) - 2021
- [j12]Martyna Maszota-Zieleniak
, Mateusz Marcisz, Malgorzata M. Kogut, Till Siebenmorgen, Martin Zacharias, Sergey A. Samsonov
:
Evaluation of replica exchange with repulsive scaling approach for docking glycosaminoglycans. J. Comput. Chem. 42(15): 1040-1053 (2021) - [j11]Krzysztof K. Bojarski
, Sergey A. Samsonov
:
Role of Oligosaccharide Chain Polarity in Protein-Glycosaminoglycan Interactions. J. Chem. Inf. Model. 61(1): 455-466 (2021) - [j10]Mateusz Marcisz, Martin Zacharias, Sergey A. Samsonov
:
Modeling Protein-Glycosaminoglycan Complexes: Does the Size Matter? J. Chem. Inf. Model. 61(9): 4475-4485 (2021) - 2020
- [j9]Agnieszka S. Karczynska
, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa
, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska
, Sergey A. Samsonov
, Adam K. Sieradzan
, Artur Gieldon
, Adam Liwo
, Rafal Slusarz
, Magdalena Slusarz
, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
:
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. J. Chem. Inf. Model. 60(3): 1844-1864 (2020) - [j8]Krzysztof K. Bojarski
, Agnieszka S. Karczynska, Sergey A. Samsonov
:
Role of Glycosaminoglycans in Procathepsin B Maturation: Molecular Mechanism Elucidated by a Computational Study. J. Chem. Inf. Model. 60(4): 2247-2256 (2020)
2010 – 2019
- 2019
- [j7]Sergey A. Samsonov
, Martin Zacharias, Isaure Chauvot de Beauchêne
:
Modeling large protein-glycosaminoglycan complexes using a fragment-based approach. J. Comput. Chem. 40(14): 1429-1439 (2019) - 2018
- [j6]Gerd Anders, Ulrich Hassiepen, Stephan Theisgen, Stephan Heymann, Lionel Muller, Tania Panigada, Daniel Huster, Sergey A. Samsonov
:
The Intrinsic Pepsin Resistance of Interleukin-8 Can Be Explained from a Combined Bioinformatical and Experimental Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 15(1): 300-308 (2018) - 2015
- [j5]Joséphine Abi-Ghanem, Sergey A. Samsonov, M. Teresa Pisabarro
:
Insights into the preferential order of strand exchange in the Cre/loxP recombinase system: impact of the DNA spacer flanking sequence and flexibility. J. Comput. Aided Mol. Des. 29(3): 271-282 (2015) - [j4]Sergey A. Samsonov, Leon Bichmann, M. Teresa Pisabarro
:
Coarse-Grained Model of Glycosaminoglycans. J. Chem. Inf. Model. 55(1): 114-124 (2015) - 2014
- [j3]Sergey A. Samsonov, Jan-Philip Gehrcke, M. Teresa Pisabarro
:
Flexibility and Explicit Solvent in Molecular-Dynamics-Based Docking of Protein-Glycosaminoglycan Systems. J. Chem. Inf. Model. 54(2): 582-592 (2014) - 2011
- [j2]Joan Teyra, Sergey A. Samsonov, Sven Schreiber, M. Teresa Pisabarro
:
SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds. BMC Bioinform. 12: 398 (2011) - [j1]Sergey A. Samsonov, Joan Teyra, M. Teresa Pisabarro
:
Docking glycosaminoglycans to proteins: analysis of solvent inclusion. J. Comput. Aided Mol. Des. 25(5): 477-489 (2011)
Coauthor Index
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last updated on 2024-06-10 20:30 CEST by the dblp team
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