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2020 – today
- 2023
[j25]Jun Tang
, Hongwei Bian, Heng Ma, Rongying Wang:
Initialization of SINS/GNSS Error Covariance Matrix Based on Error States Correlation. IEEE Access 11: 94911-94917 (2023)- [j24]Jianyi Qu, Qianqian Zhang, Xinhong Song, Hong Jiang, Heng Ma, Wenhua Li, Xiaofei Wang:
CT differentiation of the oncocytoma and renal cell carcinoma based on peripheral tumor parenchyma and central hypodense area characterisation. BMC Medical Imaging 23(1): 16 (2023) - [j23]Abigail C. Dommer, Lorenzo Casalino, Fiona L. Kearns, Mia Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John Russo, A. Sofia F. Oliveira, Clare Morris, Anthony T. Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, S. Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders S. Christensen, Daniel G. A. Smith, Zhuoran Qiao, Sai K. Sirumalla, Michael O'Connor, Frederick R. Manby, Anima Anandkumar, David J. Hardy, James C. Phillips, Abraham C. Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John D. McCalpin, Christopher J. Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John E. Stone, Daniel M. Zuckerman, Adrian J. Mulholland, Thomas F. Miller III, Shantenu Jha, Arvind Ramanathan, Lillian T. Chong, Rommie E. Amaro:
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. Int. J. High Perform. Comput. Appl. 37(1): 28-44 (2023) - [j22]Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, Defne G. Ozgulbas, Natalia Vassilieva, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Sam Foreman, Zhen Xie, Diangen Lin, Maulik Shukla, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Ian T. Foster, James J. Davis, Michael E. Papka, Thomas S. Brettin, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan:
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. Int. J. High Perform. Comput. Appl. 37(6): 683-705 (2023) - [j21]Jian Ding, Yiyang Jiang, Heng Ma:
Shotgun Threshold for Sparse Erdős-Rényi Graphs. IEEE Trans. Inf. Theory 69(11): 7373-7391 (2023) - [i7]Shuaiwen Leon Song, Bonnie Kruft, Minjia Zhang, Conglong Li, Shiyang Chen, Chengming Zhang, Masahiro Tanaka, Xiaoxia Wu, Jeff Rasley, Ammar Ahmad Awan, Connor Holmes, Martin Cai, Adam Ghanem, Zhongzhu Zhou, Yuxiong He, Pete Luferenko, Divya Kumar, Jonathan A. Weyn, Ruixiong Zhang, Sylwester Klocek, Volodymyr Vragov, Mohammed AlQuraishi, Gustaf Ahdritz, Christina Floristean, Cristina Negri, Rao Kotamarthi, Venkatram Vishwanath, Arvind Ramanathan, Sam Foreman, Kyle Hippe, Troy Arcomano, Romit Maulik, Maxim Zvyagin, Alexander Brace, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Zhen Xie, Diangen Lin, Maulik Shukla, Ian T. Foster, James J. Davis, Michael E. Papka, Thomas S. Brettin, Prasanna Balaprakash, Gina Tourassi, John Gounley, Heidi A. Hanson, Thomas E. Potok, Massimiliano Lupo Pasini, Kate Evans, Dan Lu, Dalton D. Lunga, Junqi Yin, Sajal Dash, Feiyi Wang, Mallikarjun Shankar, Isaac Lyngaas, Xiao Wang, Guojing Cong, Pei Zhang, Ming Fan, Siyan Liu, Adolfy Hoisie, Shinjae Yoo, Yihui Ren, William Tang, Kyle Felker, Alexey Svyatkovskiy, Hang Liu, Ashwin M. Aji, Angela Dalton, Michael J. Schulte, Karl Schulz, Yuntian Deng, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Anima Anandkumar, Rick Stevens:
DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies. CoRR abs/2310.04610 (2023) - 2022
- [j20]Anda Trifan, Defne Gorgun, Michael Salim, Zongyi Li, Alexander Brace, Maxim Zvyagin, Heng Ma, Austin Clyde, David Clark, David J. Hardy, Tom Burnley, Lei Huang, John D. McCalpin, Murali Emani, Hyenseung Yoo, Junqi Yin, Aristeidis Tsaris, Vishal Subbiah, Tanveer Raza, Jessica Liu, Noah Trebesch, Geoffrey Wells, Venkatesh Mysore, Tom Gibbs, James C. Phillips, S. Chakra Chennubhotla, Ian T. Foster, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, John E. Stone, Emad Tajkhorshid, Sarah A. Harris, Arvind Ramanathan:
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action. Int. J. High Perform. Comput. Appl. 36(5-6): 603-623 (2022) - [j19]Austin Clyde, Stephanie Galanie, Daniel W. Kneller, Heng Ma, Yadu N. Babuji, Ben Blaiszik, Alexander Brace, Thomas S. Brettin, Kyle Chard, Ryan Chard, Leighton Coates, Ian T. Foster, Darin Hauner, Vilmos Kertesz, Neeraj Kumar, Hyungro Lee, Zhuozhao Li, André Merzky, Jurgen G. Schmidt, Li Tan, Mikhail Titov, Anda Trifan, Matteo Turilli, Hubertus Van Dam, Srinivas C. Chennubhotla, Shantenu Jha, Andrey Kovalevsky, Arvind Ramanathan, Martha S. Head, Rick Stevens:
High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Noncovalent Inhibitor. J. Chem. Inf. Model. 62(1): 116-128 (2022) - [j18]Jun Tang, Hongwei Bian, Heng Ma, Rongying Wang:
One-Step Initial Alignment Algorithm for SINS in the ECI Frame Based on the Inertial Attitude Measurement of the CNS. Sensors 22(14): 5123 (2022) - [j17]Zhe Wen, Hongwei Bian, Rongying Wang, Heng Ma:
Quantitative Study of the T-AVIM-Based Simulated IMU Error in Polar Regions. Sensors 22(16): 5988 (2022) - [j16]Xian Ding, Hongwei Bian, Heng Ma, Rongying Wang:
Ship Trajectory Generator under the Interference of Wind, Current and Waves. Sensors 22(23): 9395 (2022) - [c21]Alexander Brace, Igor Yakushin, Heng Ma, Anda Trifan, Todd S. Munson, Ian T. Foster, Arvind Ramanathan, Hyungro Lee, Matteo Turilli, Shantenu Jha:
Coupling streaming AI and HPC ensembles to achieve 100-1000× faster biomolecular simulations. IPDPS 2022: 806-816 - 2021
- [j15]Lorenzo Casalino, Abigail C. Dommer, Zied Gaieb, Emília P. Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony T. Bogetti, Austin Clyde, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian T. Chong, Carlos Simmerling, David J. Hardy, Julio D. C. Maia, James C. Phillips, Thorsten Kurth, Abraham C. Stern, Lei Huang, John D. McCalpin, Mahidhar Tatineni, Tom Gibbs, John E. Stone, Shantenu Jha, Arvind Ramanathan, Rommie E. Amaro:
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics. Int. J. High Perform. Comput. Appl. 35(5) (2021) - [j14]Eunice Cho, Margarida Rosa, Ruhi Anjum, Saman Mehmood, Mariya Soban, Moniza Mujtaba, Khair Bux, Syed Tarique Moin, Mohammad Tanweer, Sarath Dantu, Alessandro Pandini, Junqi Yin, Heng Ma, Arvind Ramanathan, Barira Islam, Antonia S. J. S. Mey, Debsindhu Bhowmik, Shozeb M. Haider:
Dynamic Profiling of β-Coronavirus 3CL Mpro Protease Ligand-Binding Sites. J. Chem. Inf. Model. 61(6): 3058-3073 (2021) - [c20]Aymen Al Saadi, Dario Alfè, Yadu N. Babuji, Agastya Bhati, Ben Blaiszik, Alexander Brace, Thomas S. Brettin, Kyle Chard, Ryan Chard, Austin Clyde, Peter V. Coveney, Ian T. Foster, Tom Gibbs, Shantenu Jha, Kristopher Keipert, Dieter Kranzlmüller, Thorsten Kurth, Hyungro Lee, Zhuozhao Li, Heng Ma, Gerald Mathias, André Merzky, Alexander Partin, Arvind Ramanathan, Ashka Shah, Abraham C. Stern, Rick Stevens, Li Tan, Mikhail Titov, Anda Trifan, Aristeidis Tsaris, Matteo Turilli, Huub J. J. Van Dam, Shunzhou Wan, David Wifling, Junqi Yin:
IMPECCABLE: Integrated Modeling PipelinE for COVID Cure by Assessing Better LEads. ICPP 2021: 40:1-40:12 - [c19]Yan Wu, Ruizhen Wu, Heng Ma, Lin Wang, Jianlong Su:
An Efficient Parallelized Huffman Decoding PE. ITCC 2021: 115-119 - [c18]Hyungro Lee, André Merzky, Li Tan, Mikhail Titov, Matteo Turilli, Dario Alfè, Agastya Bhati, Alex Brace, Austin Clyde, Peter V. Coveney, Heng Ma, Arvind Ramanathan, Rick Stevens, Anda Trifan, Hubertus Van Dam, Shunzhou Wan, Sean R. Wilkinson, Shantenu Jha:
Scalable HPC & AI infrastructure for COVID-19 therapeutics. PASC 2021: 2:1-2:13 - [c17]Alexander Brace, Michael Salim, Vishal Subbiah, Heng Ma, Murali Emani, Anda Trifan, Austin R. Clyde, Corey Adams, Thomas D. Uram, Hyun Seung Yoo, Andew Hock, Jessica Liu, Venkatram Vishwanath, Arvind Ramanathan:
Stream-AI-MD: streaming AI-driven adaptive molecular simulations for heterogeneous computing platforms. PASC 2021: 6:1-6:13 - [i6]Agastya P. Bhati, Shunzhou Wan, Dario Alfè, Austin R. Clyde, Mathis Bode, Li Tan, Mikhail Titov, André Merzky, Matteo Turilli, Shantenu Jha, Roger R. Highfield, Walter Rocchia, Nicola Scafuri, Sauro Succi, Dieter Kranzlmüller, Gerald Mathias, David Wifling, Yann Donon, Alberto Di Meglio, Sofia Vallecorsa, Heng Ma, Anda Trifan, Arvind Ramanathan, Tom Brettin, Alexander Partin, Fangfang Xia, Xiaotan Duan, Rick Stevens, Peter V. Coveney:
Pandemic Drugs at Pandemic Speed: Accelerating COVID-19 Drug Discovery with Hybrid Machine Learning- and Physics-based Simulations on High Performance Computers. CoRR abs/2103.02843 (2021) - [i5]Alexander Brace, Hyungro Lee, Heng Ma, Anda Trifan, Matteo Turilli, Igor Yakushin, Todd S. Munson, Ian T. Foster, Shantenu Jha, Arvind Ramanathan:
Achieving 100X faster simulations of complex biological phenomena by coupling ML to HPC ensembles. CoRR abs/2104.04797 (2021) - 2020
- [j13]Wei Bai, Xiao Xu, Haizhu Xie, Chunjuan Sun, Kaili Che, Meijie Liu, Jing Liu, Yinghong Shi, Heng Ma:
Adnexal torsion in the third trimester of pregnancy: a case report and diagnostic value of MR imaging. BMC Medical Imaging 20(1): 19 (2020) - [j12]Ying-Chih Tseng, Heng Ma:
A Multibit Representation of Bloom Filter for Simultaneous Acquisition of Membership and Attribute Information. Int. J. Netw. Secur. 22(1): 136-144 (2020) - [j11]Lu-I Chen, Heng Ma:
Multiclass Membership Determination Integrating an ID-Bound Method with Bloom Filter. Inf. Technol. Control. 49(2): 197-205 (2020) - [i4]Aymen Al Saadi, Dario Alfè, Yadu N. Babuji, Agastya Bhati, Ben Blaiszik, Thomas S. Brettin, Kyle Chard, Ryan Chard, Peter V. Coveney, Anda Trifan, Alex Brace, Austin Clyde, Ian T. Foster, Tom Gibbs, Shantenu Jha, Kristopher Keipert, Thorsten Kurth, Dieter Kranzlmüller, Hyungro Lee, Zhuozhao Li, Heng Ma, André Merzky, Gerald Mathias, Alexander Partin, Junqi Yin, Arvind Ramanathan, Ashka Shah, Abraham C. Stern, Rick Stevens, Li Tan, Mikhail Titov, Aristeidis Tsaris, Matteo Turilli, Huub J. J. Van Dam, Shunzhou Wan, David Wifling:
IMPECCABLE: Integrated Modeling PipelinE for COVID Cure by Assessing Better LEads. CoRR abs/2010.06574 (2020) - [i3]Hyungro Lee, André Merzky, Li Tan, Mikhail Titov, Matteo Turilli, Dario Alfè, Agastya Bhati, Alex Brace, Austin Clyde, Peter V. Coveney, Heng Ma, Arvind Ramanathan, Rick Stevens, Anda Trifan, Hubertus Van Dam, Shunzhou Wan, Sean R. Wilkinson, Shantenu Jha:
Scalable HPC and AI Infrastructure for COVID-19 Therapeutics. CoRR abs/2010.10517 (2020) - [i2]Arvind Ramanathan, Heng Ma, Akash Parvatikar, S. Chakra Chennubhotla:
Artificial intelligence techniques for integrative structural biology of intrinsically disordered proteins. CoRR abs/2012.00885 (2020)
2010 – 2019
- 2019
- [c16]Mingfeng Chen, Fuqiang Liu, Heng Ma, Zhiliang Hong:
High-Bandwidth Wide-Output-Swing Linear Amplifier for LTE-100MHz Envelope Tracking. ASICON 2019: 1-4 - [c15]Fuqiang Liu, Mingfeng Chen, Heng Ma, Zhiliang Hong:
Dual-Loop-Controlled AC-Coupling 100MHz Bandwidth Envelope Tracking Modulator for 5G RF Power Amplifier. ASICON 2019: 1-4 - [c14]Dehong Lv, Heng Ma, Fuqiang Liu, Zhiliang Hong:
A curvature corrected bandgap reference with mismatch cancelling and noise reduction. ASICON 2019: 1-4 - [c13]Junghoon Chae, Debsindhu Bhowmik, Heng Ma, Arvind Ramanathan, Chad A. Steed:
Visual Analytics for Deep Embeddings of Large Scale Molecular Dynamics Simulations. IEEE BigData 2019: 1759-1764 - [c12]Simon Cheng Liu, Chaoran Li, Yue Li, Heng Ma, Xiao Hou, Yiming Shen, Licong Wang, Ze Chen, Xianghao Guo, Hengtong Lu, Yu Du, Qinting Tang:
Automatic generation of tower defense levels using PCG. FDG 2019: 10:1-10:9 - [c11]Heng Ma, Debsindhu Bhowmik, Hyungro Lee, Matteo Turilli, Michael T. Young, Shantenu Jha, Arvind Ramanathan:
Deep Generative Model Driven Protein Folding Simulations. PARCO 2019: 45-55 - [c10]Hyungro Lee, Matteo Turilli, Shantenu Jha, Debsindhu Bhowmik, Heng Ma, Arvind Ramanathan:
DeepDriveMD: Deep-Learning Driven Adaptive Molecular Simulations for Protein Folding. DLS@SC 2019: 12-19 - [i1]Hyungro Lee, Heng Ma, Matteo Turilli, Debsindhu Bhowmik, Shantenu Jha, Arvind Ramanathan:
DeepDriveMD: Deep-Learning Driven Adaptive Molecular Simulations for Protein Folding. CoRR abs/1909.07817 (2019) - 2018
- [c9]Huanqian Yan, Yonggang Lu, Heng Ma:
Density-based Clustering using Automatic Density Peak Detection. ICPRAM 2018: 95-102 - 2017
- [c8]Heng Ma, Rui Li, Ke Qian, Yibo Gao, Ling Chen:
Analysis of Temperature and Gas Flow Distribution Inside Safety Helmet Based on Numerical Simulation. LSMS/ICSEE (1) 2017: 371-379 - 2016
- [j10]Heng Ma, Ying-Chih Tseng, Lu-I Chen:
A CMAC-based scheme for determining membership with classification of text strings. Neural Comput. Appl. 27(7): 1959-1967 (2016) - [c7]Heng Ma, Meng Wang:
Trajectory similarity metric based on vector fields on manifold and multi-scale space partition. ICNC-FSKD 2016: 1600-1604 - [c6]Heng Ma, Yonggang Lu, Haitao Zhang:
Determining the Near Optimal Architecture of Autoencoder using Correlation Analysis of the Network Weights. IJCCI (NCTA) 2016: 53-61 - 2015
- [j9]C. Masato Nakano, Hye Suk Byun, Heng Ma, Tao Wei, Mohamed Y. El-Naggar:
A framework for stochastic simulations and visualization of biological electron-transfer dynamics. Comput. Phys. Commun. 193: 1-9 (2015) - [j8]Ching-Ho Yen, Heng Ma, Chi-Huang Yeh, Chia-Hao Chang:
The economic design of variable acceptance sampling plan with rectifying inspection. Kybernetes 44(3): 440-450 (2015) - 2014
- [j7]Hongjie Jia, Shifei Ding, Heng Ma, Wanqiu Xing:
Spectral Clustering with Neighborhood Attribute Reduction Based on Information Entropy. J. Comput. 9(6): 1316-1324 (2014) - 2013
- [j6]Heng Ma, Hung-Yu Cheng:
A Two-Layer Scheme for Membership and Classification Querying. Kybernetes 42(1): 82-93 (2013) - [c5]Hung-Yu Cheng, Heng Ma:
Membership classification using Integer Bloom Filter. ICIS 2013: 385-390 - 2012
- [c4]Heng Ma, Ying-Chih Tseng:
A Neural-Based Scheme for Simultaneously Determining Membership and Class of String Identifiers. TAAI 2012: 219-223 - 2010
- [j5]Heng Ma, Tsueng-Fang Tsai, Chia-Cheng Liu:
Real-time monitoring of water quality using temporal trajectory of live fish. Expert Syst. Appl. 37(7): 5158-5171 (2010)
2000 – 2009
- 2008
- [j4]Wen-Chen Lee, Heng Ma, Bor-Wen Cheng:
A heuristic for nesting problems of irregular shapes. Comput. Aided Des. 40(5): 625-633 (2008) - [j3]Heng Ma:
Fast blocking of undesirable web pages on client PC by discriminating URL using neural networks. Expert Syst. Appl. 34(2): 1533-1540 (2008) - 2007
- [j2]Heng Ma, Chia-Cheng Liu:
Fast Nesting of 2-D Sheet Parts With Arbitrary Shapes Using a Greedy Method and Semi-Discrete Representations. IEEE Trans Autom. Sci. Eng. 4(2): 273-282 (2007) - 2006
- [c3]Heng Ma, Chia-Cheng Liu:
String Filtering of a Large String Collection on Mobile Devices using a Neural Network. JCIS 2006 - [c2]Liang-Chyau Sheu, Heng Ma:
A Greedy Approach for Multi-Symbol SMS Message Segmentation. JCIS 2006
1990 – 1999
- 1997
- [j1]Collin Wang, Heng Ma, David J. Cannon:
Human-Machine Collaboration in Robotics: Integrating Virtual Tools with a Collision Avoidance Concept using Conglomerates of Spheres. J. Intell. Robotic Syst. 18(4): 367-397 (1997) - 1995
- [c1]Heng Ma, David J. Cannon, Soundar R. T. Kumara:
A Scheme Integrating Neural Networks for Real-Time Robotic Collision Detection. ICRA 1995: 881-886
Coauthor Index
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