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Kathryn E. Holt
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2020 – today
- 2023
- [j8]Ryan R. Wick, Louise M. Judd, Kathryn E. Holt:
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS Comput. Biol. 19(3) (2023) - 2022
- [j7]Ryan R. Wick, Kathryn E. Holt:
Polypolish: Short-read polishing of long-read bacterial genome assemblies. PLoS Comput. Biol. 18(1) (2022)
2010 – 2019
- 2019
- [j6]Stephen C. Watts, Scott C. Ritchie, Michael Inouye, Kathryn E. Holt:
FastSpar: rapid and scalable correlation estimation for compositional data. Bioinform. 35(6): 1064-1066 (2019) - 2018
- [j5]Ryan R. Wick, Louise M. Judd, Kathryn E. Holt:
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. PLoS Comput. Biol. 14(11) (2018) - 2017
- [j4]Ryan R. Wick, Louise M. Judd, Claire L. Gorrie, Kathryn E. Holt:
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput. Biol. 13(6) (2017) - 2015
- [j3]Ryan R. Wick, Mark B. Schultz, Justin Zobel, Kathryn E. Holt:
Bandage: interactive visualization of de novo genome assemblies. Bioinform. 31(20): 3350-3352 (2015) - [j2]Laura Irina Rusu, Kelly L. Wyres, Matthias Reumann, Carlos Queiroz, Alexe Bojovschi, Tom Conway, Saurabh Kumar Garg, David J. Edwards, Geoff Hogg, Kathryn E. Holt:
A platform for leveraging next generation sequencing for routine microbiology and public health use. Health Inf. Sci. Syst. 3(1) (2015) - 2011
- [c1]Philip C. Church, Andrzej Goscinski, Kathryn E. Holt, Michael Inouye, Amol Ghoting, Konstantin Makarychev, Matthias Reumann:
Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers. EMBC 2011: 924-927
2000 – 2009
- 2009
- [j1]Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill:
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25(16): 2074-2075 (2009)
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