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ORCIDDmitry Korkin
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2020 – today
- 2022
[j16]Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu
:
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. Database J. Biol. Databases Curation 2022(2022) (2022)- [i1]Maksim Kitsak, Alexander A. Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A. Eisenberg, David L. Alderson, Dmitry Korkin, Igor Linkov:
Finding shortest and nearly shortest path nodes in large substantially incomplete networks. CoRR abs/2204.04117 (2022) - 2021
- [c9]Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu:
A high-throughput, online tool for investigating host-pathogen macromolecular interactions buried in scientific literature. CHASE 2021: 117-118 - 2020
- [j15]Hongzhu Cui, Chong Zhou, Xinyu Dai, Yuting Liang, Randy C. Paffenroth, Dmitry Korkin:
Boosting gene expression clustering with system-wide biological information: a robust autoencoder approach. Int. J. Comput. Biol. Drug Des. 13(1): 98-123 (2020) - [c8]Haadi Mombini, Ruojun Li, Yixin Zhang, Dmitry Korkin, Bengisu Tulu:
An Exploratory Study of Social Media Analysis for Rare Diseases Using Machine Learning Algorithms: A Case Study of Trigeminal Neuralgia. HICSS 2020: 1-10
2010 – 2019
- 2019
- [j14]Oleksandr Narykov, Dmytro Bogatov, Dmitry Korkin:
DISPOT: a simple knowledge-based protein domain interaction statistical potential. Bioinform. 35(24): 5374-5378 (2019) - 2017
- [e1]Xiaohua Hu, Chi-Ren Shyu, Yana Bromberg, Jean Gao, Yang Gong, Dmitry Korkin, Illhoi Yoo, Huiru Jane Zheng:
2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, Kansas City, MO, USA, November 13-16, 2017. IEEE Computer Society 2017, ISBN 978-1-5090-3050-7 [contents] - 2016
- [j13]Xingyan Kuang, Andi Dhroso, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin:
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. Database J. Biol. Databases Curation 2016 (2016) - [j12]Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina:
Patterns of amino acid conservation in human and animal immunodeficiency viruses. Bioinform. 32(17): 685-692 (2016) - [c7]Hongzhu Cui, Dmitry Korkin:
Effect-specific analysis of pathogenic SNVs in human interactome: Leveraging edge-based network robustness. EMBC 2016: 2929-2932 - 2015
- [j11]Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu:
An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 12(2): 298-308 (2015) - 2014
- [j10]Dmitriy Shin, Gerald C. Arthur, Mihail Popescu, Dmitry Korkin, Chi-Ren Shyu:
Uncovering influence links in molecular knowledge networks to streamline personalized medicine. J. Biomed. Informatics 52: 394-405 (2014) - [j9]Nan Zhao, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin:
Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning. PLoS Comput. Biol. 10(5) (2014) - 2013
- [c6]Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu:
PBSalign: Sequence-independent local alignment of protein binding sites. BIBM 2013: 35-42 - 2012
- [j8]Thanh Thieu, Sneha Joshi, Samantha Warren, Dmitry Korkin:
Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches. Bioinform. 28(6): 867-875 (2012) - [j7]Bin Pang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu:
Fast protein binding site comparisons using visual words representation. Bioinform. 28(10): 1345-1352 (2012) - [j6]Xingyan Kuang, Jing Ginger Han, Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin:
DOMMINO: a database of macromolecular interactions. Nucleic Acids Res. 40(Database-Issue): 501-506 (2012) - [j5]Bin Pang, Xingyan Kuang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu:
PBSword: a web server for searching similar protein-protein binding sites. Nucleic Acids Res. 40(Web-Server-Issue): 428-434 (2012) - 2011
- [j4]Qingguo Wang, Dmitry Korkin, Yi Shang:
A Fast Multiple Longest Common Subsequence (MLCS) Algorithm. IEEE Trans. Knowl. Data Eng. 23(3): 321-334 (2011) - 2010
- [j3]Chi-Ren Shyu, Bin Pang, Pin-Hao Chi, Nan Zhao, Dmitry Korkin, Dong Xu:
ProteinDBS v2.0: a web server for global and local protein structure search. Nucleic Acids Res. 38(Web-Server-Issue): 53-58 (2010) - [c5]Qingguo Wang, Mian Pan, Yi Shang, Dmitry Korkin:
A Fast Heuristic Search Algorithm for Finding the Longest Common Subsequence of Multiple Strings. AAAI 2010: 1287-1292 - [c4]Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin:
An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches. BIBM 2010: 185-189
2000 – 2009
- 2009
- [j2]Pin-Hao Chi, Bin Pang, Dmitry Korkin, Chi-Ren Shyu:
Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments. Bioinform. 25(19): 2559-2565 (2009) - [c3]Qingguo Wang, Dmitry Korkin, Yi Shang:
Efficient Dominant Point Algorithms for the Multiple Longest Common Subsequence (MLCS) Problem. IJCAI 2009: 1494-1500 - 2008
- [c2]Dmitry Korkin, Qingguo Wang, Yi Shang:
An Efficient Parallel Algorithm for the Multiple Longest Common Subsequence (MLCS) Problem. ICPP 2008: 354-363 - 2006
- [j1]Dmitry Korkin, Fred P. Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali:
Structural Modeling of Protein Interactions by Analogy: Application to PSD-95. PLoS Comput. Biol. 2(11) (2006) - 2002
- [c1]Dmitry Korkin, Lev Goldfarb:
Multiple genome rearrangement: a general approach via the evolutionary genome graph. ISMB 2002: 303-311
Coauthor Index
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