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Ales Krenek
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2020 – today
- 2023
- [j10]Amanda Calatrava, Hernán Asorey, Ján Astalos, Alberto Azevedo, Francesco Benincasa, Ignacio Blanquer, Martin Bobák, Francisco Vilar Brasileiro, Laia Codó, Laura del Cano, Borja Esteban, Meritxell Ferret, Josef Handl, Tobias Kerzenmacher, Valentin Kozlov, Ales Krenek, Ricardo Martins, Manuel Pavesio, Antonio Juan Rubio-Montero, Juan Sánchez-Ferrero:
A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. Comput. Sci. Rev. 49: 100571 (2023) - [j9]Ondrej Schindler, Karel Berka, Alessio Cantara, Ales Krenek, Dominik Tichý, Tomás Racek, Radka Svobodová Vareková:
αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Res. 51(W1): 11-16 (2023) - [i6]Adam Hájek, Michal Starý, Filip Jozefov, Helge Hecht, Elliott James Price, Ales Krenek:
De-novo Identification of Small Molecules from Their GC-EI-MS Spectra. CoRR abs/2304.01634 (2023) - [i5]Tomás Svoboda, Tomás Racek, Josef Handl, Jozef Sabo, Adrián Rosinec, Lukasz Opiola, Wojciech Jesionek, Milan Esner, Markéta Pernisová, Natallia Madzia Valasevich, Ales Krenek, Radka Svobodová Vareková:
Onedata4Sci: Life science data management solution based on Onedata. CoRR abs/2311.16712 (2023) - 2022
- [j8]Dalibor Trapl, Martin Krupicka, Vladimír Visnovský, Jana Hozzová, Jaroslav Olha, Ales Krenek, Vojtech Spiwok:
Property Map Collective Variable as a Useful Tool for a Force Field Correction. J. Chem. Inf. Model. 62(3): 567-576 (2022) - [i4]Amanda Calatrava, Hernán Asorey, Ján Astalos, Alberto Azevedo, Francesco Benincasa, Ignacio Blanquer, Martin Bobák, Francisco V. Brasileiro, Laia Codó, Laura del Cano, Borja Esteban, Meritxell Ferret, Josef Handl, Tobias Kerzenmacher, Valentin Kozlov, Ales Krenek, Ricardo Martins, Manuel Pavesio, Antonio J. Rubio-Montero, Juan Sánchez-Ferrero:
A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. CoRR abs/2211.07738 (2022) - 2021
- [c12]Vladimir Mic, Tomás Racek, Ales Krenek, Pavel Zezula:
Similarity Search for an Extreme Application: Experience and Implementation. SISAP 2021: 265-279
2010 – 2019
- 2018
- [i3]Jana Pazúriková, Jaroslav Olha, Ales Krenek, Vojtech Spiwok:
Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations. CoRR abs/1801.02362 (2018) - 2016
- [j7]Tomás Racek, Jana Pazúriková, Radka Svobodová Vareková, Stanislav Geidl, Ales Krenek, Francesco L. Falginella, Vladimír Horský, Václav Hejret, Jaroslav Koca:
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. J. Cheminformatics 8(1): 57:1-57:14 (2016) - 2015
- [j6]Stanislav Geidl, Tomás Bouchal, Tomás Racek, Radka Svobodová Vareková, Václav Hejret, Ales Krenek, Ruben Abagyan, Jaroslav Koca:
High-quality and universal empirical atomic charges for chemoinformatics applications. J. Cheminformatics 7: 59:1-59:10 (2015) - 2014
- [j5]Tomás Bouchal, Radka Svobodová Vareková, Tomás Racek, Crina-Maria Ionescu, Stanislav Geidl, Ales Krenek, Jaroslav Koca:
Empirical charges for chemoinformatics applications. J. Cheminformatics 6(S-1): 60 (2014) - 2013
- [j4]Jakub Stepán, Petr Kulhánek, Milan Lenco, Zora Strelcová, Ales Krenek, Jaroslav Koca:
Nemesis - a molecular modeling package. J. Cheminformatics 5(S-1): 12 (2013) - 2010
- [c11]Tomas Golembiovsky, Ales Krenek:
Compression of Vector Field Changing in Time. MEMICS 2010: 40-46
2000 – 2009
- 2008
- [j3]Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao:
Special Issue: The First Provenance Challenge. Concurr. Comput. Pract. Exp. 20(5): 409-418 (2008) - [j2]Ales Krenek, Jirí Sitera, Ludek Matyska, Frantisek Dvorák, Milos Mulac, Miroslav Ruda, Zdenek Salvet:
gLite Job Provenance - a job-centric view. Concurr. Comput. Pract. Exp. 20(5): 453-462 (2008) - [c10]Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet:
Job Provenance - Insight into Very Large Provenance Datasets. IPAW 2008: 144-151 - [c9]Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska:
Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services. PDP 2008: 447-454 - 2007
- [c8]Miroslav Ruda, Ales Krenek, Milos Mulac, Jan Pospisil, Zdenek Sustr:
A uniform job monitoring service in multiple job universes. GMW@HPDC 2007: 17-22 - 2006
- [c7]Frantisek Dvorák, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jan Pospisil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu:
gLite Job Provenance. IPAW 2006: 246-253 - 2005
- [c6]Igor Peterlík, Ales Krenek:
Haptically Driven Travelling through Conformational Space. WHC 2005: 342-347 - [c5]Jirí Denemark, Michal Jankowski, Ales Krenek, Ludek Matyska, Norbert Meyer, Miroslav Ruda, Pawel Wolniewicz:
Best Practices of User Account Management with Virtual Organization Based Access to Grid. PPAM 2005: 633-642 - 2004
- [j1]Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Alessandro Maraschini, Fabrizio Pacini, Massimo Sottilaro, Annalisa Terracina, D. Colling, Francesco Giacomini, Elisabetta Ronchieri, Alessio Gianelle, Mirco Mazzucato, Rosario Peluso, Massimo Sgaravatto, Andrea Guarise, Rosario M. Piro, Albert Werbrouck, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, J. Skrabal, Michal Vocu, M. Mezzadri, Francesco Prelz, Salvatore Monforte, Marco Pappalardo:
The DataGrid Workload Management System: Challenges and Results. J. Grid Comput. 2(4): 353-367 (2004) - 2003
- [c4]Ales Krenek:
Haptic Rendering of Complex Force Fields. IPT/EGVE 2003: 231-239 - [c3]Ales Krenek, Igor Peterlík, Ludek Matyska:
Building 3D State Spaces of Virtual Environments with a TDS-Based Algorithm. PVM/MPI 2003: 529-536 - [i2]Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Fabrizio Pacini, Annalisa Terracina, Alessandro Maraschini, D. Colling, Salvatore Monforte, Marco Pappalardo, Livio Salconi, Francesco Giacomini, Elisabetta Ronchieri, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu, M. Mezzadri, Francesco Prelz, Alessio Gianelle, R. Peluso, Massimo Sgaravatto, S. Barale, Andrea Guarise, Albert Werbrouck:
The first deployment of workload management services on the EU DataGrid Testbed: feedback on design and implementation. CoRR cs.DC/0306007 (2003) - [i1]Giuseppe Avellino, S. Barale, Stefano Beco, Barbara Cantalupo, D. Colling, Francesco Giacomini, Alessio Gianelle, Andrea Guarise, Ales Krenek, Daniel Kouril, Alessandro Maraschini, Ludek Matyska, M. Mezzadri, Salvatore Monforte, Milos Mulac, Fabrizio Pacini, Marco Pappalardo, R. Peluso, Jirí Pospísil, Francesco Prelz, Elisabetta Ronchieri, Miroslav Ruda, Livio Salconi, Zdenek Salvet, Massimo Sgaravatto, Jirí Sitera, Annalisa Terracina, Michal Vocu, Albert Werbrouck:
The EU DataGrid Workload Management System: towards the second major release. CoRR cs.DC/0306072 (2003) - 2001
- [c2]Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell:
Early Experiences with the EGrid Testbed. CCGRID 2001: 130-139 - 2000
- [c1]Ales Krenek:
Handling Cycles in Conformational Behaviour Visualization. WSCG 2000
Coauthor Index
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