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2020 – today
- 2021
[j10]Yu Watanabe, Kiyoko F. Aoki-Kinoshita
, Yasushi Ishihama, Shujiro Okuda:
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. Nucleic Acids Res. 49(Database-Issue): D1523-D1528 (2021)- 2020
- [j9]Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno:
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48(Database-Issue): D1145-D1152 (2020)
2010 – 2019
- 2019
- [j8]Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama:
The jPOST environment: an integrated proteomics data repository and database. Nucleic Acids Res. 47(Database-Issue): D1218-D1224 (2019) - 2017
- [j7]Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak, Yasset Pérez-Riverol, Tobias Ternent, David S. Campbell, Manuel Bernal Llinares, Shujiro Okuda, Shin Kawano, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaíno:
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Nucleic Acids Res. 45(Database-Issue): D1100-D1106 (2017) - [j6]Shujiro Okuda, Yu Watanabe, Yuki Moriya, Shin Kawano, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama, Susumu Goto, Yasushi Ishihama:
jPOSTrepo: an international standard data repository for proteomes. Nucleic Acids Res. 45(Database-Issue): D1107-D1111 (2017) - 2015
- [j5]Christopher J. Mitchell, Derese Getnet, Min Sik Kim, Srinivas Manda Srikanth, Praveen Kumar, Tai-Chung Huang, Sneha M. Pinto, Nirujogi Raja Sekhar, Mio Iwasaki, Patrick G. Shaw, Xinyan Wu, Jun Zhong, Raghothama Chaerkady, Arivusudar Marimuthu, Babylakshmi Muthusamy, Nandini A. Sahasrabuddhe, Rajesh Raju, Caitlyn Bowman, Ludmila V. Danilova, Jevon Cutler, Dhanashree S. Kelkar, Charles G. Drake, T. S. Keshava Prasad, Luigi Marchionni, Peter N. Murakami, Alan F. Scott, Leming Shi, Jean Thierry-Mieg, Danielle Thierry-Mieg, Rafael A. Irizarry, Leslie Cope, Yasushi Ishihama, Charles Wang, Harsha Gowda, Akhilesh Pandey:
A multi-omic analysis of human naïve CD4+ T cells. BMC Syst. Biol. 9: 75 (2015) - 2011
- [j4]Nozomu Yachie, Rintaro Saito, Naoyuki Sugiyama, Masaru Tomita, Yasushi Ishihama:
Integrative Features of the Yeast Phosphoproteome and Protein-Protein Interaction Map. PLoS Comput. Biol. 7(1) (2011) - 2010
- [j3]Kosaku Shinoda, Masaru Tomita, Yasushi Ishihama:
emPAI Calc - for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry. Bioinform. 26(4): 576-577 (2010) - [j2]Haruna Imamura, Nozomu Yachie, Rintaro Saito, Yasushi Ishihama, Masaru Tomita:
Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. BMC Bioinform. 11: 232 (2010)
2000 – 2009
- 2008
- [j1]Kosaku Shinoda, Masaru Tomita, Yasushi Ishihama:
Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments. Bioinform. 24(14): 1590-1595 (2008)
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