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2020 – today
- 2023
[j30]Grzegorz Skoraczynski
, Mateusz Kitlas, Blazej Miasojedow, Anna Gambin:
Critical assessment of synthetic accessibility scores in computer-assisted synthesis planning. J. Cheminformatics 15(1) (2023)- 2022
- [j29]Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D. Robin, Krzysztof Gogolewski, Anna Gambin:
TADeus2: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure. Nucleic Acids Res. 50(W1): 744-752 (2022) - 2020
- [j28]Aleksandra I. Jarmolinska, Anna Gambin, Joanna I. Sulkowska:
Knot_pull - python package for biopolymer smoothing and knot detection. Bioinform. 36(3): 953-955 (2020) - [j27]Krzysztof Gogolewski, Marcin Kostecki, Anna Gambin:
Low Entropy Sub-Networks Prevent the Integration of Metabolomic and Transcriptomic Data. Entropy 22(11): 1238 (2020)
2010 – 2019
- 2019
- [j26]Neo Christopher Chung, Blazej Miasojedow, Michal Startek, Anna Gambin:
Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data. BMC Bioinform. 20-S(15): 644 (2019) - [j25]Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung, Anna Gambin:
Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA Sequencing Data. J. Comput. Biol. 26(8): 782-793 (2019) - 2018
- [j24]Anna Gambin, Monika Heiner:
Preface. Fundam. Informaticae 160(1-2): v-vii (2018) - [j23]Michal Aleksander Ciach, Mateusz Krzysztof Lacki, Blazej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin:
Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry. J. Comput. Biol. 25(3): 282-301 (2018) - [c23]Barbara Poszewiecka, Pawel Stankiewicz, Tomasz Gambin, Anna Gambin:
TADeus-a tool for clinical interpretation of structural variants modifying chromatin organization. BIBM 2018: 84-87 - [c22]Krzysztof Gogolewski, Marcin Kostecki, Anna Gambin:
Renal cell carcinoma classification: a case study of pitfalls associated with metabolic landscape analysis. BIBM 2018: 96-101 - [c21]Krzysztof Gogolewski, Anna Gambin:
PCA-like Methods for the Integration of Single Cell RNA-seq Data with Metabolic Networks. ICCABS 2018: 1 - [c20]Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung, Anna Gambin:
Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA-seq Data. ISBRA 2018: 335-346 - [c19]Szymon Majewski, Michal Aleksander Ciach, Michal Startek, Wanda Niemyska, Blazej Miasojedow, Anna Gambin:
The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution. WABI 2018: 25:1-25:21 - 2017
- [j22]Michal Startek, Jakub Nogly, Agnieszka Gromadka, Dariusz Grzebelus, Anna Gambin:
Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool. BMC Bioinform. 18(S-12): 57-66 (2017) - [c18]Michal Aleksander Ciach, Mateusz Krzysztof Lacki, Blazej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin:
Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry. ISBRA 2017: 96-107 - 2016
- [j21]Agata Charzynska, Anna Gambin:
Improvement of the k-nn Entropy Estimator with Applications in Systems Biology. Entropy 18(1): 13 (2016) - 2015
- [j20]Weronika Wronowska, Agata Charzynska, Karol Nienaltowski, Anna Gambin:
Computational modeling of sphingolipid metabolism. BMC Syst. Biol. 9: 47 (2015) - 2014
- [j19]Tomasz Jetka, Agata Charzynska, Anna Gambin, Michael P. H. Stumpf, Michal Komorowski:
StochDecomp - Matlab package for noise decomposition in stochastic biochemical systems. Bioinform. 30(1): 137-138 (2014) - 2013
- [j18]Tomasz Gambin, Pawel Stankiewicz, Maciej Sykulski, Anna Gambin:
Functional performance of aCGH design for clinical cytogenetics. Comput. Biol. Medicine 43(6): 775-785 (2013) - [j17]Maciej Sykulski, Tomasz Gambin, Magdalena Bartnik, Katarzyna Derwinska, Barbara Wisniowiecka-Kowalnik, Pawel Stankiewicz, Anna Gambin:
Multiple samples aCGH analysis for rare CNVs detection. J. Clin. Bioinform. 3: 12 (2013) - 2012
- [j16]Piotr Dittwald, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin:
Inferring serum proteolytic activity from LC-MS/MS data. BMC Bioinform. 13(S-5): S7 (2012) - [j15]Mikolaj Rybinski, Michal Lula, Pawel Banasik, Slawomir Lasota, Anna Gambin:
Tav4SB: integrating tools for analysis of kinetic models of biological systems. BMC Syst. Biol. 6: 25 (2012) - [j14]Anna Gambin, Anna K. Marciniak-Czochra:
Preface. Fundam. Informaticae 118(4) (2012) - [i1]Anna Gambin, Anna K. Marciniak-Czochra, Damian Niwinski:
Alan Turing and Systems Biology. ERCIM News 2012(91) (2012) - 2011
- [c17]Maciej Sykulski, Tomasz Gambin, Magdalena Bartnik, Katarzyna Derwinska, Barbara Wisniowiecka-Kowalnik, Pawel Stankiewicz, Anna Gambin:
Efficient Multiple Samples aCGH Analysis for Rare CNVs Detection. BIBM 2011: 406-409 - [c16]Anna Gambin, Slawomir Lasota, Michal Startek, Maciej Sykulski, Laurent Noé, Gregory Kucherov:
Subset Seed Extension to Protein BLAST. BIOINFORMATICS 2011: 149-158 - [c15]Tomasz Gambin, Pawel Stankiewicz, Maciej Sykulski, Anna Gambin:
Robustness of Exon CGH Array Designs. BIOINFORMATICS 2011: 173-182 - [c14]Piotr Dittwald, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin:
Inferring serum proteolytic activity from LC-MS/MS data. ICCABS 2011: 81-86 - 2010
- [j13]Anna Gambin, Boguslaw Kluge:
Modeling Proteolysis from Mass Spectrometry Proteomic Data. Fundam. Informaticae 103(1-4): 89-104 (2010) - [j12]Anna Gambin, Damian Niwinski, Pawel Urzyczyn:
Preface. Fundam. Informaticae 103(1-4) (2010)
2000 – 2009
- 2009
- [j11]Anna Gambin, Ewa Szczurek, Janusz Dutkowski, Magda Bakun, Michal Dadlez:
Classification of peptide mass fingerprint data by novel no-regret boosting method. Comput. Biol. Medicine 39(5): 460-473 (2009) - [j10]Boguslaw Kluge, Anna Gambin, Wojciech Niemiro:
Modeling Exopeptidase Activity from LC-MS Data. J. Comput. Biol. 16(2): 395-406 (2009) - [j9]Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, Ewa Szczurek, Gregory Kucherov:
On Subset Seeds for Protein Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 483-494 (2009) - 2008
- [j8]Anna Gambin, Piotr Krzyzanowski, Piotr Pokarowski:
Aggregation Algorithms for Perturbed Markov Chains with Applications to Networks Modeling. SIAM J. Sci. Comput. 31(1): 45-73 (2008) - [c13]Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, Ewa Szczurek, Gregory Kucherov:
Efficient Seeding Techniques for Protein Similarity Search. BIRD 2008: 466-478 - 2007
- [j7]Anna Gambin, Piotr Wojtalewicz:
CTX-BLAST: context sensitive version of protein BLAST. Bioinform. 23(13): 1686-1688 (2007) - [j6]Janusz Dutkowski, Anna Gambin:
On consensus biomarker selection. BMC Bioinform. 8(S-5) (2007) - [j5]Lukasz Bolikowski, Anna Gambin:
New Metrics for Phylogenies. Fundam. Informaticae 78(2): 199-216 (2007) - [c12]Anna Gambin, Ewa Szczurek:
No-Regret Boosting. ICANNGA (1) 2007: 422-431 - 2006
- [j4]Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek Wilczynski, Jerzy Tiuryn:
Applying dynamic Bayesian networks to perturbed gene expression data. BMC Bioinform. 7: 249 (2006) - [j3]Anna Gambin, Slawomir Lasota, Michai Rutkowski:
Analyzing Stationary States of Gene Regulatory Network Using Petri Nets. Silico Biol. 6(1-2): 93-109 (2006) - [j2]Anna Gambin, Jerzy Tiuryn, Jerzy Tyszkiewicz:
Alignment with Context Dependent Scoring Function. J. Comput. Biol. 13(1): 81-101 (2006) - [c11]Marta Luksza, Boguslaw Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin:
Efficient Model-Based Clustering for LC-MS Data. WABI 2006: 32-43 - 2005
- [c10]Anna Gambin, Damian Wójtowicz:
Almost FPRAS for Lattice Models of Protein Folding. WEA 2005: 534-544 - 2002
- [c9]Anna Gambin, Slawomir Lasota, Radoslaw Szklarczyk, Jerzy Tiuryn, Jerzy Tyszkiewicz:
Contextual alignment of biological sequences. ECCB 2002: 116-127 - 2001
- [j1]Martin Dietzfelbinger, Anna Gambin, Slawomir Lasota:
On Different Models for Packet Flow in Multistage Interconnection Networks. Fundam. Informaticae 46(4): 287-314 (2001) - [c8]Anna Gambin, Piotr Pokarowski:
A New Combinatorial Algorithm for Large Markov Chains (Extended Abstract). CASC 2001: 195-211 - [c7]Anna Gambin, Piotr Pokarowski:
A Combinatorial Aggregation Algorithm for Stationary Distribution of a Large Markov Chain. FCT 2001: 384-387
1990 – 1999
- 1999
- [c6]Anna Gambin:
On Approximating the Number of Bases of Exchange Preserving Matroids. MFCS 1999: 332-342 - [c5]Anna Gambin, Adam Malinowski:
Randomized Gossiping by Packets in Faulty Networks. SOFSEM 1999: 387-394 - 1998
- [c4]Anna Gambin, Adam Malinowski:
Randomized Meldable Priority Queues. SOFSEM 1998: 344-349 - 1996
- [c3]Bogdan S. Chlebus, Anna Gambin, Piotr Indyk:
Shared-Memory Simulations on a Faulty-Memory DMM. ICALP 1996: 586-597 - [c2]Anna Gambin, Slawomir Lasota:
On the Semantics of Multistage Interconnection Networks. SOFSEM 1996: 359-368 - 1994
- [c1]Bogdan S. Chlebus, Anna Gambin, Piotr Indyk:
PRAM Computations Resilient to Memory Faults. ESA 1994: 401-412
Coauthor Index
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