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ORCIDMariana L. Neves
Mariana Lara Neves – Mariana Neves 0002
Person information
- affiliation: German Federal Institute for Risk Assessment, Berlin, Germany
- affiliation (2013 - 2017): Hasso Plattner Institute, Potsdam, Germany
- affiliation (former): Humboldt University Berlin, Department of Computer Science, Germany
- affiliation (PhD 2012): Complutense University of Madrid, Faculty of Computer Science, Spain
Other persons with the same name
- Mariana Neves 0001
![[0000-0001-6804-3603]](https://dblp.org/img/orcid-mark.12x12.png "0000-0001-6804-3603")
— Deloitte, London, UK
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Journal Articles
- 2023
[j12]Mariana L. Neves, Antonina Klippert, Fanny Knöspel, Juliane Rudeck, Ailine Stolz, Zsofia Ban, Markus Becker, Kai Diederich, Barbara Grune, Pia Kahnau, Nils Ohnesorge, Johannes Pucher, Gilbert Schönfelder, Bettina Bert, Daniel Butzke:
Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments. J. Biomed. Semant. 14(1): 13 (2023)- 2021
- [j11]Mariana Neves, Jurica Seva:
An extensive review of tools for manual annotation of documents. Briefings Bioinform. 22(1): 146-163 (2021) - 2017
- [j10]Maryam Habibi, Leon Weber, Mariana L. Neves, David Luis Wiegandt, Ulf Leser:
Deep learning with word embeddings improves biomedical named entity recognition. Bioinform. 33(14): i37-i48 (2017) - [j9]Milena Kraus, Julian Niedermeier, Marcel Jankrift, Sören Tietböhl, Toni Stachewicz, Hendrik Folkerts, Matthias Uflacker, Mariana L. Neves:
Olelo: a web application for intuitive exploration of biomedical literature. Nucleic Acids Res. 45(Webserver-Issue): W478-W483 (2017) - 2014
- [j8]Mariana L. Neves, Ulf Leser:
A survey on annotation tools for the biomedical literature. Briefings Bioinform. 15(2): 327-340 (2014) - [j7]Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014) - [j6]Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz:
CellFinder: a cell data repository. Nucleic Acids Res. 42(Database-Issue): 950-958 (2014) - 2013
- [j5]Mariana L. Neves, Alexander Damaschun, Nancy Mah, Fritz Lekschas, Stefanie Seltmann, Harald Stachelscheid, Jean-Fred Fontaine, Andreas Kurtz, Ulf Leser:
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. Database J. Biol. Databases Curation 2013 (2013) - 2011
- [j4]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j3]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - 2010
- [j2]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Moara: a Java library for extracting and normalizing gene and protein mentions. BMC Bioinform. 11: 157 (2010) - 2007
- [j1]Ramón Díaz-Uriarte, Andreu Alibés, Edward R. Morrissey, Andrés Cañada, Oscar M. Rueda, Mariana L. Neves:
Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. Nucleic Acids Res. 35(Web-Server-Issue): 75-80 (2007)
Conference and Workshop Papers
- 2024
- [c37]Mariana L. Neves, Cristian Grozea, Philippe Thomas, Roland Roller, Rachel Bawden, Aurélie Névéol, Steffen Castle, Vanessa Bonato, Giorgio Maria Di Nunzio, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Antonio Jimeno-Yepes:
Findings of the WMT 2024 Biomedical Translation Shared Task: Test Sets on Abstract Level. WMT 2024: 124-138 - 2023
- [c36]Mariana L. Neves, Ines Schadock, Beryl Eusemann, Gilbert Schönfelder, Bettina Bert, Daniel Butzke:
Is the ranking of PubMed similar articles good enough? An evaluation of text similarity methods for three datasets. BioNLP@ACL 2023: 133-144 - [c35]Mariana L. Neves:
Bf3R at SemEval-2023 Task 7: a text similarity model for textual entailment and evidence retrieval in clinical trials and animal studies. SemEval@ACL 2023: 125-129 - [c34]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Cristian Grozea:
Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. WMT 2023: 43-54 - 2022
- [c33]Mariana Neves, Antonio Jimeno-Yepes, Amy Siu, Roland Roller, Philippe Thomas, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Giorgio Maria Di Nunzio, Federica Vezzani, Christel Gérardin, Rachel Bawden, Darryl Estrada, Salvador Lima-López, Eulàlia Farré-Maduell, Martin Krallinger, Cristian Grozea, Aurélie Névéol:
Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. WMT 2022: 694-723 - 2021
- [c32]Pablo Accuosto, Mariana Neves, Horacio Saggion:
Argumentation Mining in Scientific Literature: From Computational Linguistics to Biomedicine. BIR@ECIR 2021: 20-36 - [c31]Lana Yeganova, Dina Wiemann, Mariana L. Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martínez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, Antonio Jimeno-Yepes:
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. WMT@EMNLP 2021: 664-683 - 2020
- [c30]Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves:
MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice. LREC 2020: 3676-3682 - [c29]Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno-Yepes, Nancy Mah, David Martínez, Aurélie Névéol, Mariana L. Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann, Lana Yeganova:
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. WMT@EMNLP 2020: 660-687 - 2019
- [c28]Mariana L. Neves, Daniel Butzke, Barbara Grune:
Evaluation of Scientific Elements for Text Similarity in Biomedical Publications. ArgMining@ACL 2019: 124-135 - [c27]Liadh Kelly, Hanna Suominen, Lorraine Goeuriot, Mariana L. Neves, Evangelos Kanoulas, Dan Li, Leif Azzopardi, René Spijker, Guido Zuccon, Harrisen Scells, João R. M. Palotti:
Overview of the CLEF eHealth Evaluation Lab 2019. CLEF 2019: 322-339 - [c26]Mariana L. Neves, Daniel Butzke, Antje Dörendahl, Nora Leich, Benedikt Hummel, Gilbert Schönfelder, Barbara Grune:
Overview of the CLEF eHealth 2019 Multilingual Information Extraction. CLEF (Working Notes) 2019 - [c25]Liadh Kelly, Lorraine Goeuriot, Hanna Suominen, Mariana L. Neves, Evangelos Kanoulas, René Spijker, Leif Azzopardi, Dan Li, Jimmy, João R. M. Palotti, Guido Zuccon:
CLEF eHealth 2019 Evaluation Lab. ECIR (2) 2019: 267-274 - [c24]Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro:
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) 2019: 29-53 - 2018
- [c23]Diego Moussallem, Thiago Castro Ferreira, Marcos Zampieri, Maria Cláudia Cavalcanti, Geraldo Xexéo, Mariana L. Neves, Axel-Cyrille Ngonga Ngomo:
RDF2PT: Generating Brazilian Portuguese Texts from RDF Data. LREC 2018 - [c22]Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor:
Parallel Corpora for the Biomedical Domain. LREC 2018 - [c21]Mariana Neves, Daniel Butzke, Gilbert Schönfelder, Barbara Grune:
Bf3R at SemEval-2018 Task 7: Evaluating Two Relation Extraction Tools for Finding Semantic Relations in Biomedical Abstracts. SemEval@NAACL-HLT 2018: 816-820 - [c20]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Cristian Grozea, Amy Siu, Madeleine Kittner, Karin Verspoor:
Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets. WMT (shared task) 2018: 324-339 - 2017
- [c19]Mariana L. Neves, Hendrik Folkerts, Marcel Jankrift, Julian Niedermeier, Toni Stachewicz, Sören Tietböhl, Milena Kraus, Matthias Uflacker:
Olelo: A Question Answering Application for Biomedicine. ACL (System Demonstrations) 2017: 61-66 - [c18]Mariana L. Neves:
A parallel collection of clinical trials in Portuguese and English. BUCC@ACL 2017: 36-40 - [c17]Georg Wiese, Dirk Weissenborn, Mariana L. Neves:
Neural Question Answering at BioASQ 5B. BioNLP 2017: 76-79 - [c16]Mariana L. Neves, Fabian Eckert, Hendrik Folkerts, Matthias Uflacker:
Assessing the performance of Olelo, a real-time biomedical question answering application. BioNLP 2017: 342-350 - [c15]Georg Wiese, Dirk Weissenborn, Mariana L. Neves:
Neural Domain Adaptation for Biomedical Question Answering. CoNLL 2017: 281-289 - [c14]Antonio Jimeno-Yepes, Aurélie Névéol, Mariana L. Neves, Karin Verspoor, Ondrej Bojar, Arthur Boyer, Cristian Grozea, Barry Haddow, Madeleine Kittner, Yvonne Lichtblau, Pavel Pecina, Roland Roller, Rudolf Rosa, Amy Siu, Philippe Thomas, Saskia Trescher:
Findings of the WMT 2017 Biomedical Translation Shared Task. WMT 2017: 234-247 - 2016
- [c13]Frederik Schulze, Mariana L. Neves:
Entity-Supported Summarization of Biomedical Abstracts. BioTxtM@COLING 2016 2016: 40-49 - [c12]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol:
The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine. LREC 2016 - [c11]Maximilian Grundke, Johannes Jasper, Mariya Perchyk, Jan Philipp Sachse, Ralf Krestel, Mariana L. Neves:
TextAI: Enhancing TextAE with Intelligent Annotation Support. SMBM 2016: 80-84 - [c10]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Varvara Logacheva, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Martin Popel, Matt Post, Raphael Rubino, Carolina Scarton, Lucia Specia, Marco Turchi, Karin Verspoor, Marcos Zampieri:
Findings of the 2016 Conference on Machine Translation. WMT 2016: 131-198 - 2015
- [c9]Mariana L. Neves:
HPI Question Answering System in the BioASQ 2015 Challenge. CLEF (Working Notes) 2015 - 2014
- [c8]Konrad Herbst, Cindy Fähnrich, Mariana L. Neves, Matthieu-P. Schapranow:
Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF (Working Notes) 2014: 91-102 - [c7]Mariana L. Neves:
HPI in-memory-based Database System in Task 2b of BioASQ. CLEF (Working Notes) 2014: 1337-1347 - 2013
- [c6]Philippe Thomas, Mariana L. Neves, Tim Rocktäschel, Ulf Leser:
WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting. SemEval@NAACL-HLT 2013: 628-635 - 2010
- [c5]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010 - 2009
- [c4]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Extraction of biomedical events using case-based reasoning. BioNLP@HLT-NAACL (Shared Task) 2009: 68-76 - 2008
- [c3]Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP 2008: 108-109 - [c2]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. BioLINK@ISMB/ECCB 2008: 71-80 - 2001
- [c1]Mariana L. Neves, Flávia de Almeida Barros:
Citationfinder: a knowledge-based system for web pages of citations classification. SMC 2001: 441-446
Editorship
- 2022
- [e7]Philipp Koehn, Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Tom Kocmi, André Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri, Aurélie Névéol, Mariana Neves, Martin Popel, Marco Turchi, Marcos Zampieri:
Proceedings of the Seventh Conference on Machine Translation, WMT 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7-8, 2022. Association for Computational Linguistics 2022, ISBN 978-1-959429-29-6 [contents] - 2019
- [e6]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor:
Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 1: Research Papers. Association for Computational Linguistics 2019, ISBN 978-1-950737-27-7 [contents] - [e5]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor:
Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 2: Shared Task Papers, Day 1. Association for Computational Linguistics 2019 [contents] - [e4]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor:
Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 3: Shared Task Papers, Day 2. Association for Computational Linguistics 2019 [contents] - 2018
- [e3]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor:
Proceedings of the Third Conference on Machine Translation: Research Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-81-0 [contents] - [e2]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor:
Proceedings of the Third Conference on Machine Translation: Shared Task Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-81-0 [contents] - 2016
- [e1]Mariana L. Neves, Fabio Rinaldi, Goran Nenadic, Dietrich Rebholz-Schuhmann:
Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, SMBM 2016, Potsdam, Germany, August 4-5, 2016. CEUR Workshop Proceedings 1650, CEUR-WS.org 2016 [contents]
Informal and Other Publications
- 2024
- [i6]Mariana Neves:
Detection of fields of applications in biomedical abstracts with the support of argumentation elements. CoRR abs/2404.06121 (2024) - 2020
- [i5]Mariana Neves, Jurica Seva:
Annotationsaurus: A Searchable Directory of Annotation Tools. CoRR abs/2010.06251 (2020) - 2018
- [i4]Diego Moussallem, Thiago Castro Ferreira, Marcos Zampieri, Maria Cláudia Cavalcanti, Geraldo Xexéo, Mariana L. Neves, Axel-Cyrille Ngonga Ngomo:
RDF2PT: Generating Brazilian Portuguese Texts from RDF Data. CoRR abs/1802.08150 (2018) - 2017
- [i3]Georg Wiese, Dirk Weissenborn, Mariana L. Neves:
Neural Domain Adaptation for Biomedical Question Answering. CoRR abs/1706.03610 (2017) - [i2]Georg Wiese, Dirk Weissenborn, Mariana L. Neves:
Neural Question Answering at BioASQ 5B. CoRR abs/1706.08568 (2017) - 2014
- [i1]Mariana Neves:
An analysis on the entity annotations in biological corpora. F1000Research 3: 96 (2014)
Coauthor Index
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