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ORCIDCarole A. Goble
Carole Anne Goble
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- affiliation: University of Manchester, School of Computer Science, UK
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2020 – today
- 2024
[j119]Stian Soiland-Reyes
, Carole A. Goble, Paul Groth:
Evaluating FAIR Digital Object and Linked Data as distributed object systems. PeerJ Comput. Sci. 10: e1781 (2024)- [i32]Sean R. Wilkinson, Meznah Aloqalaa, Khalid Belhajjame, Michael R. Crusoe, Bruno de Paula Kinoshita, Luiz Gadelha, Daniel Garijo, Ove Johan Ragnar Gustafsson, Nick S. Juty, Sehrish Kanwal, Farah Zaib Khan, Johannes Köster, Karsten Peters-von Gehlen, Line Pouchard, Randy K. Rannow, Stian Soiland-Reyes, Nicola Soranzo, Shoaib Sufi, Ziheng Sun, Baiba Vilne, Merridee A. Wouters, Denis Yuen, Carole A. Goble:
Applying the FAIR Principles to Computational Workflows. CoRR abs/2410.03490 (2024) - [i31]Johan Gustafsson, Sean R. Wilkinson, Finn Bacall, Luca Pireddu, Stian Soiland-Reyes, Simone Leo, Stuart Owen, Nick S. Juty, José María Fernández, Björn A. Grüning, Tom Brown, Hervé Ménager, Salvador Capella-Gutiérrez, Frederik Coppens, Carole A. Goble:
WorkflowHub: a registry for computational workflows. CoRR abs/2410.06941 (2024) - [i30]Rafael Ferreira da Silva, Deborah Bard, Kyle Chard, Shaun De Witt, Ian T. Foster, Tom Gibbs, Carole A. Goble, William F. Godoy, Johan Gustafsson, Utz-Uwe Haus, Stephen Hudson, Shantenu Jha, Laila Los, Drew Paine, Frédéric Suter, Logan T. Ward, Sean R. Wilkinson, Marcos Amaris, Yadu N. Babuji, Jonathan Bader, Riccardo Balin, Daniel Balouek, Sarah J. Beecroft, Khalid Belhajjame, Rajat Bhattarai, Wes Brewer, Paul Brunk, Silvina Caíno-Lores, Henri Casanova, Daniela Cassol, Jared Coleman, Tainã Coleman, Iacopo Colonnelli, Anderson Andrei Da Silva, Daniel de Oliveira, Pascal Elahi, Nour Elfaramawy, Wael R. Elwasif, Brian Etz, Thomas Fahringer, Wesley Ferreira, Rosa Filgueira, Jacob Fosso Tande, Luiz Gadelha, Andy Gallo, Daniel Garijo, Yiannis Georgiou, Philipp Gritsch, Patricia Grubel, Amal Gueroudji, Quentin Guilloteau, Carlo Hamalainen, Rolando P. Hong Enriquez, Lauren Huet, Kevin Hunter Kesling, Paula Iborra, Shiva Jahangiri, Jan Janssen, Joe Jordan, Sehrish Kanwal, Liliane N. O. Kunstmann, Fabian Lehmann, Ulf Leser, Chen Li, Peini Liu, Jakob Lüttgau, Richard Lupat, José M. Fernández, Ketan Maheshwari, Tanu Malik, Jack Marquez, Motohiko Matsuda, Doriana Medic, Somayeh Mohammadi, Alberto Mulone, John-Luke Navarro, Kin Wai Ng, Klaus Nölp, Bruno de Paula Kinoshita, Ryan Prout, Michael R. Crusoe, Sashko Ristov, Stefan A Robila, Daniel Rosendo, Billy Rowell, Jedrzej Rybicki, Hector Sanchez, Nishant Saurabh, Sumit Kumar Saurav, Tom Scogland, Dinindu Senanayake, Woong Shin, Raül Sirvent, Tyler J. Skluzacek, Barry Sly-Delgado, Stian Soiland-Reyes, Abel Souza, Renan Souza, Domenico Talia, Nathan R. Tallent:
Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows. CoRR abs/2410.14943 (2024) - 2023
- [j118]Fuqi Xu, Nick S. Juty, Carole A. Goble, Simon Jupp, Helen E. Parkinson, Mélanie Courtot:
Features of a FAIR vocabulary. J. Biomed. Semant. 14(1): 6 (2023) - [j117]Natasha F. Noy, Carole A. Goble:
Are We Cobblers without Shoes?: Making Computer Science Data FAIR. Commun. ACM 66(1): 36-38 (2023) - [j116]Romain David, Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole A. Goble, Martin Houde, Isabel Kemmer, Antje Keppler, Philippe Lieutaud, Christian Ohmann, Maria Panagiotopoulou, Sara Raza Khan, Arina Rybina, Stian Soiland-Reyes, Charlotte Wit, Rudolf Wittner, Rafael Andrade Buono, Sarah Arnaud Marsh, Pauline Audergon, Dylan Bonfils, José María Carazo, Remi Charrel, Frederik Coppens, Wolfgang Fecke, Claudia Filippone, Eva G. Alvarez, Sheraz Gul, Henning Hermjakob, Katja Herzog, Petr Holub, Lukasz Kozera, Allyson L. Lister, José López-Coronado, Bénédicte Madon, Kurt Majcen, William Martin, Wolfgang Müller, Elli Papadopoulou, Christine M. A. Prat, Paolo Romano, Susanna-Assunta Sansone, Gary Saunders, Niklas Blomberg, Jonathan Ewbank:
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Sci. J. 22: 35 (2023) - [c187]Nazeefa Fatima, Pinar Alper, Frederico Bianchini, Korbinian Bösl, Ulrike Wittig, Carole A. Goble, Frederik Coppens:
RDMkit: The Research Data Management Toolkit for Life Sciences. CoRDI 2023 - [c186]Carole A. Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodríguez-Navas, José María Fernández, Björn A. Grüning, Simone Leo, Luca Pireddu, Michael R. Crusoe, Johan Gustafsson, Salvador Capella-Gutiérrez, Frederik Coppens:
The EOSC-Life Workflow Collaboratory for the Life Sciences. CoRDI 2023 - [e13]York Sure-Vetter, Carole A. Goble:
1st Conference on Research Data Infrastructure - Connecting Communities, CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023. TIB Open Publishing 2023 [contents] - [i29]Rafael Ferreira da Silva, Rosa M. Badia, Venkat Bala, Debbie Bard, Peer-Timo Bremer, Ian Buckley, Silvina Caíno-Lores, Kyle Chard, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Manish Parashar, Frédéric Suter, Nick Tyler, Thomas D. Uram, Ilkay Altintas, Stefan Andersson, William Arndt, Juan Aznar, Jonathan Bader, Bartosz Balis, Chris Blanton, Kelly Rosa Braghetto, Aharon Brodutch, Paul Brunk, Henri Casanova, Alba Cervera-Lierta, Justin Chigu, Tainã Coleman, Nick Collier, Iacopo Colonnelli, Frederik Coppens, Michael R. Crusoe, Will Cunningham, Bruno de Paula Kinoshita, Paolo Di Tommaso, Charles M. Doutriaux, Matthew Downton, Wael R. Elwasif, Bjoern Enders, Chris Erdmann, Thomas Fahringer, Ludmilla Figueiredo, Rosa Filgueira, Martin Foltin, Anne Fouilloux, Luiz Gadelha, Andy Gallo, Artur García-Sáez, et al.:
Workflows Community Summit 2022: A Roadmap Revolution. CoRR abs/2304.00019 (2023) - [i28]Stian Soiland-Reyes, Carole A. Goble, Paul Groth:
Evaluating FAIR Digital Object and Linked Data as distributed object systems. CoRR abs/2306.07436 (2023) - [i27]Yo Yehudi, Carole A. Goble, Caroline Jay:
Sustainability indicators in an open online community. CoRR abs/2309.12120 (2023) - 2022
- [j115]Michael R. Crusoe, Sanne Abeln, Alexandru Iosup, Peter Amstutz, John Chilton, Nebojsa Tijanic, Hervé Ménager, Stian Soiland-Reyes, Bogdan Gavrilovic, Carole A. Goble, The Cwl Community:
Methods included. Commun. ACM 65(6): 54-63 (2022) - [j114]Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. Data Sci. 5(2): 97-138 (2022) - [j113]Alex R. Hardisty, Paul Brack, Carole A. Goble, Laurence Livermore, Ben Scott, Quentin Groom, Stuart Owen, Stian Soiland-Reyes:
The Specimen Data Refinery: A Canonical Workflow Framework and FAIR Digital Object Approach to Speeding up Digital Mobilisation of Natural History Collections. Data Intell. 4(2): 320-341 (2022) - [j112]Paul Brack, Peter Crowther, Stian Soiland-Reyes, Stuart Owen, Douglas Lowe, Alan R. Williams, Quentin Groom, Mathias Dillen, Frederik Coppens, Björn A. Grüning, Ignacio Eguinoa, Philip Ewels, Carole A. Goble:
Ten simple rules for making a software tool workflow-ready. PLoS Comput. Biol. 18(3) (2022) - [c185]Fuqi Xu, Nick S. Juty, Carole A. Goble, Simon Jupp, Helen E. Parkinson, Mélanie Courtot:
Features of a FAIR Vocabulary. SWAT4HCLS 2022: 118-148 - [i26]Yo Yehudi, Lukas Hughes-Noehrer, Carole A. Goble, Caroline Jay:
COVID-19: An exploration of consecutive systemic barriers to pathogen-related data sharing during a pandemic. CoRR abs/2205.12098 (2022) - [i25]Yo Yehudi, Lukas Hughes-Noehrer, Carole A. Goble, Caroline Jay:
Subjective data models in bioinformatics: Do wet-lab and computational biologists comprehend data differently? CoRR abs/2208.12346 (2022) - 2021
- [j111]Manuel Bernal Llinares, Javier Ferrer-Gómez, Nick S. Juty, Carole A. Goble, Sarala M. Wimalaratne, Henning Hermjakob:
Identifiers.org: Compact Identifier services in the cloud. Bioinform. 37(12): 1781-1782 (2021) - [j110]Ebtisam Alharbi, Rigina Skeva, Nick S. Juty, Caroline Jay, Carole A. Goble:
Exploring the Current Practices, Costs and Benefits of FAIR Implementation in Pharmaceutical Research and Development: A Qualitative Interview Study. Data Intell. 3(4): 507-527 (2021) - [j109]Victor Chang, Carole A. Goble, Muthu Ramachandran, Lazarus Jegatha Deborah, Reinhold Behringer:
Editorial on Machine Learning, AI and Big Data Methods and Findings for COVID-19. Inf. Syst. Frontiers 23(6): 1363-1367 (2021) - [c184]Rudolf Wittner, Petr Holub, Heimo Müller, Jörg Geiger, Carole A. Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio-De-Castillia, David Grunwald, Hiroki Nakae:
ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data. IPAW 2021: 222-225 - [c183]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf:
A Community Roadmap for Scientific Workflows Research and Development. WORKS 2021: 81-90 - [i24]Daniel S. Katz, Morane Gruenpeter, Tom Honeyman, Lorraine J. Hwang, Mark D. Wilkinson, Vanessa V. Sochat, Hartwig Anzt, Carole A. Goble:
A Fresh Look at FAIR for Research Software. CoRR abs/2101.10883 (2021) - [i23]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong H. Ahn, Shantenu Jha, Carole A. Goble, Lavanya Ramakrishnan, J. Luc Peterson, Bjoern Enders, Douglas Thain, Ilkay Altintas, Yadu N. Babuji, Rosa M. Badia, Vivien Bonazzi, Tainã Coleman, Michael R. Crusoe, Ewa Deelman, Frank Di Natale, Paolo Di Tommaso, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Alex Ganose, Björn A. Grüning, Daniel S. Katz, Olga A. Kuchar, Ana Kupresanin, Bertram Ludäscher, Ketan Maheshwari, Marta Mattoso, Kshitij Mehta, Todd S. Munson, Jonathan Ozik, Tom Peterka, Loic Pottier, Tim Randles, Stian Soiland-Reyes, Benjamín Tovar, Matteo Turilli, Thomas D. Uram, Karan Vahi, Michael Wilde, Matthew Wolf, Justin M. Wozniak:
Workflows Community Summit: Bringing the Scientific Workflows Community Together. CoRR abs/2103.09181 (2021) - [i22]Michael R. Crusoe, Sanne Abeln, Alexandru Iosup, Peter Amstutz, John Chilton, Nebojsa Tijanic, Hervé Ménager, Stian Soiland-Reyes, Carole A. Goble:
Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language. CoRR abs/2105.07028 (2021) - [i21]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Tainã Coleman, Dan Laney, Dong H. Ahn, Shantenu Jha, Dorran Howell, Stian Soiland-Reyes, Ilkay Altintas, Douglas Thain, Rosa Filgueira, Yadu N. Babuji, Rosa M. Badia, Bartosz Balis, Silvina Caíno-Lores, Scott Callaghan, Frederik Coppens, Michael R. Crusoe, Kaushik De, Frank Di Natale, Tu Mai Anh Do, Bjoern Enders, Thomas Fahringer, Anne Fouilloux, Grigori Fursin, Alban Gaignard, Alex Ganose, Daniel Garijo, Sandra Gesing, Carole A. Goble, Adil Hasan, Sebastiaan Huber, Daniel S. Katz, Ulf Leser, Douglas Lowe, Bertram Ludäscher, Ketan Maheshwari, Maciej Malawski, Rajiv Mayani, Kshitij Mehta, André Merzky, Todd S. Munson, Jonathan Ozik, Loïc Pottier, Sashko Ristov, Mehdi Roozmeh, Renan Souza, Frédéric Suter, Benjamín Tovar, Matteo Turilli, Karan Vahi, Alvaro Vidal-Torreira, Wendy R. Whitcup, Michael Wilde, Alan R. Williams, Matthew Wolf, Justin M. Wozniak:
Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. CoRR abs/2106.05177 (2021) - [i20]Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. CoRR abs/2108.06503 (2021) - [i19]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf:
A Community Roadmap for Scientific Workflows Research and Development. CoRR abs/2110.02168 (2021) - [i18]Hugh F. Williamson, Julia Brettschneider, Mario Cáccamo, Robert P. Davey, Carole A. Goble, Paul J. Kersey, Sean T. May, Richard J. Morris, Richard Ostler, Tony P. Pridmore, Christopher J. Rawlings, David J. Studholme, Sotirios A. Tsaftaris, Sabina Leonelli:
Data management challenges for artificial intelligence in plant and agricultural research. F1000Research 10: 324 (2021) - [i17]Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft:
Perspectives on automated composition of workflows in the life sciences. F1000Research 10: 897 (2021) - 2020
- [j108]Niall Beard, Finn Bacall, Aleksandra Nenadic, Milo Thurston, Carole A. Goble, Susanna-Assunta Sansone, Teresa K. Attwood:
TeSS: a platform for discovering life-science training opportunities. Bioinform. 36(10): 3290-3291 (2020) - [j107]Anna-Lena Lamprecht, Leyla J. García, Mateusz Kuzak, Carlos Martinez-Ortiz, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon C. Ison, Paula Andrea Martínez, Peter McQuilton, Alfonso Valencia, Jennifer L. Harrow, Fotis E. Psomopoulos, Josep Lluis Gelpí, Neil P. Chue Hong, Carole A. Goble, Salvador Capella-Gutiérrez:
Towards FAIR principles for research software. Data Sci. 3(1): 37-59 (2020) - [j106]Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes:
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2(1-2): 10-29 (2020) - [j105]Nick S. Juty, Sarala M. Wimalaratne, Stian Soiland-Reyes, John A. Kunze, Carole A. Goble, Tim Clark:
Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR. Data Intell. 2(1-2): 30-39 (2020) - [j104]Paul Groth, Helena Cousijn, Tim Clark, Carole A. Goble:
FAIR Data Reuse - the Path through Data Citation. Data Intell. 2(1-2): 78-86 (2020) - [j103]Carole A. Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schober:
FAIR Computational Workflows. Data Intell. 2(1-2): 108-121 (2020) - [c182]Carole A. Goble:
The swings and roundabouts of a decade of fun and games with Research Objects. DaMaLOS 2020
2010 – 2019
- 2019
- [i16]Eoghan Ó Carragáin, Carole A. Goble, Peter Sefton, Stian Soiland-Reyes:
RO-Crate, a lightweight approach to Research Object data packaging. RO 2019 - 2018
- [j102]Pinar Alper, Khalid Belhajjame, Vasa Curcin, Carole A. Goble:
LabelFlow Framework for Annotating Workflow Provenance. Informatics 5(1): 11 (2018) - [i15]Carole A. Goble, Stian Soiland-Reyes, Sean Bechhofer:
Research Object Community Update. RO 2018 - [i14]Stian Soiland-Reyes, Farah Zaib Khan, Richard O. Sinnott, Andrew Lonie, Michael R. Crusoe, Carole A. Goble:
Capturing interoperable reproducible workflows with Common Workflow Language. RO 2018 - 2017
- [j101]Alice Allen, Cecilia R. Aragon, Christoph Becker, Jeffrey C. Carver, Andrei Chis, Benoît Combemale, Mike Croucher, Kevin Crowston, Daniel Garijo, Ashish Gehani, Carole A. Goble, Robert Haines, Robert Hirschfeld, James Howison, Kathryn D. Huff, Caroline Jay, Daniel S. Katz, Claude Kirchner, Katie Kuksenok, Ralf Lämmel, Oscar Nierstrasz, Matthew J. Turk, Rob van Nieuwpoort, Matthew Vaughn, Jurgen J. Vinju:
Engineering Academic Software (Dagstuhl Perspectives Workshop 16252). Dagstuhl Manifestos 6(1): 1-20 (2017) - [j100]Pinar Alper, Khalid Belhajjame, Carole A. Goble:
Static analysis of Taverna workflows to predict provenance patterns. Future Gener. Comput. Syst. 75: 310-329 (2017) - [j99]Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole A. Goble:
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Res. 45(Database-Issue): D404-D407 (2017) - [c181]Alasdair J. G. Gray, Carole A. Goble, Rafael C. Jiménez:
Bioschemas: From Potato Salad to Protein Annotation. ISWC (Posters, Demos & Industry Tracks) 2017 - [i13]Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch:
Four simple recommendations to encourage best practices in research software. F1000Research 6: 876- (2017) - [i12]Aleksandra Pawlik, Celia W. G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John M. Hancock, Carole A. Goble:
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action. F1000Research 6: 1040- (2017) - 2016
- [j98]Yogesh Simmhan, Lavanya Ramakrishnan, Gabriel Antoniu, Carole A. Goble:
Cloud computing for data-driven science and engineering. Concurr. Comput. Pract. Exp. 28(4): 947-949 (2016) - [c180]Kyle Chard, Mike D'Arcy, Benjamin D. Heavner, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Alexis A. Rodriguez, Stian Soiland-Reyes, Carole A. Goble, Kristi Clark, Eric W. Deutsch, Ivo D. Dinov, Nathan D. Price, Arthur W. Toga:
I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets. IEEE BigData 2016: 319-328 - [c179]Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Rostyk Kuzyakiv, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. ODLS 2016: 1-2 - [c178]Pinar Alper, Khalid Belhajjame, Carole A. Goble:
Automatic Versus Manual Provenance Abstractions: Mind the Gap. TaPP 2016 - [i11]Pinar Alper, Khalid Belhajjame, Carole A. Goble:
Automatic vs Manual Provenance Abstractions: Mind the Gap. CoRR abs/1605.06669 (2016) - [i10]Carole A. Goble, James Howison, Claude Kirchner, Oscar Nierstrasz, Jurgen J. Vinju:
Engineering Academic Software (Dagstuhl Perspectives Workshop 16252). Dagstuhl Reports 6(6): 62-87 (2016) - 2015
- [j97]Katherine Wolstencroft, Stuart Owen, Olga Krebs, Quyen Nguyen, Natalie J. Stanford, Martin Golebiewski, Andreas Weidemann, Meik Bittkowski, Lihua An, David Shockley, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
SEEK: a systems biology data and model management platform. BMC Syst. Biol. 9: 33 (2015) - [j96]Jinhui Yao, Wei Tan, Surya Nepal, Shiping Chen, Jia Zhang, David De Roure, Carole A. Goble:
ReputationNet: Reputation-Based Service Recommendation for e-Science. IEEE Trans. Serv. Comput. 8(3): 439-452 (2015) - [j95]Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina M. Hettne, Raúl Palma, Eleni Mina, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble:
Using a suite of ontologies for preserving workflow-centric research objects. J. Web Semant. 32: 16-42 (2015) - [c177]Kristian Garza, Carole A. Goble, John M. Brooke, Caroline Jay:
Framing the community data system interface. BCS HCI 2015: 269-270 - [c176]Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. ICBO 2015 - 2014
- [j94]Tim Clark, Paolo Ciccarese, Carole A. Goble:
Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. J. Biomed. Semant. 5: 28 (2014) - [j93]Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos:
Structuring research methods and data with the research object model: genomics workflows as a case study. J. Biomed. Semant. 5: 41 (2014) - [j92]Sarah Cohen Boulakia, Jiuqiang Chen, Paolo Missier, Carole A. Goble, Alan R. Williams, Christine Froidevaux:
Distilling structure in Taverna scientific workflows: a refactoring approach. BMC Bioinform. 15(S-1): S12 (2014) - [j91]Judy Qiu, Ian T. Foster, Carole A. Goble:
Emerging Computational Methods for the Life Sciences Workshop 2012. Concurr. Comput. Pract. Exp. 26(6): 1231-1233 (2014) - [j90]Daniel Garijo, Pinar Alper, Khalid Belhajjame, Óscar Corcho, Yolanda Gil, Carole A. Goble:
Common motifs in scientific workflows: An empirical analysis. Future Gener. Comput. Syst. 36: 338-351 (2014) - [j89]Carole A. Goble:
Better Software, Better Research. IEEE Internet Comput. 18(5): 4-8 (2014) - [j88]Alasdair J. G. Gray, Paul Groth, Antonis Loizou, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, Chris T. A. Evelo, Carole A. Goble, Lee Harland, Steve Pettifer, Mark Thompson, Andra Waagmeester, Antony J. Williams:
Applying linked data approaches to pharmacology: Architectural decisions and implementation. Semantic Web 5(2): 101-113 (2014) - [j87]Paul Groth, Antonis Loizou, Alasdair J. G. Gray, Carole A. Goble, Lee Harland, Steve Pettifer:
API-centric Linked Data integration: The Open PHACTS Discovery Platform case study. J. Web Semant. 29: 12-18 (2014) - [c175]Pinar Alper, Khalid Belhajjame, Carole A. Goble, Pinar Karagoz:
LabelFlow: Exploiting Workflow Provenance to Surface Scientific Data Provenance. IPAW 2014: 84-96 - [c174]Shoaib Sufi, Neil P. Chue Hong, Simon Hettrick, Mario Antonioletti, Stephen Crouch, Alexander Hay, Devasena Inupakutika, Mike Jackson, Aleksandra Pawlik, Giacomo Peru, John Robinson, Les Carr, David De Roure, Carole A. Goble, Mark Parsons:
Software in reproducible research: advice and best practice collected from experiences at the collaborations workshop. TRUST@PLDI 2014: 2:1-2:4 - [c173]Carole A. Goble, Alasdair J. G. Gray, Eleftherios Tatakis:
Help me describe my data: A demonstration of the Open PHACTS VoID Editor. ISWC (Posters & Demos) 2014: 29-32 - [c172]Colin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine Chichester, Mark Davies, Daniela Digles, Ian Dunlop, Chris T. A. Evelo, Anna Gaulton, Carole A. Goble, Alasdair J. G. Gray, Paul Groth, Lee Harland, Karen Karapetyan, Antonis Loizou, John P. Overington, Steve Pettifer, Jon Steele, Robert Stevens, Valery Tkachenko, Andra Waagmeester, Antony J. Williams, Egon L. Willighagen:
Scientific Lenses to Support Multiple Views over Linked Chemistry Data. ISWC (1) 2014: 98-113 - [c171]Jiuqiang Chen, Sarah Cohen Boulakia, Christine Froidevaux, Carole A. Goble, Paolo Missier, Alan R. Williams:
DistillFlow: removing redundancy in scientific workflows. SSDBM 2014: 46:1-46:4 - [c170]Matthew Gamble, Carole A. Goble:
Influence Factor: Extending the PROV Model With a Quantitative Measure of Influence. TAPP 2014 - [e12]Paul Groth, Marieke van Erp, Tomi Kauppinen, Jun Zhao, Carsten Keßler, Line C. Pouchard, Carole A. Goble, Yolanda Gil, Jacco van Ossenbruggen:
Proceedings of the 3rd International Workshop on Linked Science 2013 - Supporting Reproducibility, Scientific Investigations and Experiments (LISC2013) In conjunction with the 12th International Semantic Web Conference 2013 (ISWC 2013), Sydney, Australia, October 21, 2013. CEUR Workshop Proceedings 1116, CEUR-WS.org 2014 [contents] - [e11]Peter Mika, Tania Tudorache, Abraham Bernstein, Chris Welty, Craig A. Knoblock, Denny Vrandecic, Paul Groth, Natasha F. Noy, Krzysztof Janowicz, Carole A. Goble:
The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part I. Lecture Notes in Computer Science 8796, Springer 2014, ISBN 978-3-319-11963-2 [contents] - [e10]Peter Mika, Tania Tudorache, Abraham Bernstein, Chris Welty, Craig A. Knoblock, Denny Vrandecic, Paul Groth, Natasha F. Noy, Krzysztof Janowicz, Carole A. Goble:
The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part II. Lecture Notes in Computer Science 8797, Springer 2014, ISBN 978-3-319-11914-4 [contents] - [i9]Khalid Belhajjame, Jun Zhao, Daniel Garijo, Kristina M. Hettne, Raúl Palma, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble:
The Research Object Suite of Ontologies: Sharing and Exchanging Research Data and Methods on the Open Web. CoRR abs/1401.4307 (2014) - 2013
- [j86]Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair J. G. Gray, Carole A. Goble, Tim Clark:
PAV ontology: provenance, authoring and versioning. J. Biomed. Semant. 4: 37 (2013) - [j85]Katherine Wolstencroft, Stuart Owen, Matthew Horridge, Simon Jupp, Olga Krebs, Jacky L. Snoep, Franco B. du Preez, Wolfgang Müller, Robert Stevens, Carole A. Goble:
Stealthy annotation of experimental biology by spreadsheets. Concurr. Comput. Pract. Exp. 25(4): 467-480 (2013) - [j84]Stephen Crouch, Neil P. Chue Hong, Simon Hettrick, Mike Jackson, Aleksandra Pawlik, Shoaib Sufi, Les Carr, David De Roure, Carole A. Goble, Mark Parsons:
The Software Sustainability Institute: Changing Research Software Attitudes and Practices. Comput. Sci. Eng. 15(6): 74-80 (2013) - [j83]Sean Bechhofer, Iain E. Buchan, David De Roure, Paolo Missier, John D. Ainsworth, Jiten Bhagat, Philip A. Couch, Don Cruickshank, Mark Delderfield, Ian Dunlop, Matthew Gamble, Danius T. Michaelides, Stuart Owen, David R. Newman, Shoaib Sufi, Carole A. Goble:
Why linked data is not enough for scientists. Future Gener. Comput. Syst. 29(2): 599-611 (2013) - [j82]Katherine Wolstencroft, Robert Haines, Donal Fellows, Alan R. Williams, David Withers, Stuart Owen, Stian Soiland-Reyes, Ian Dunlop, Aleksandra Nenadic, Paul Fisher, Jiten Bhagat, Khalid Belhajjame, Finn Bacall, Alex R. Hardisty, Abraham Nieva de la Hidalga, Maria P. Balcazar Vargas, Shoaib Sufi, Carole A. Goble:
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Res. 41(Webserver-Issue): 557-561 (2013) - [c169]Pinar Alper, Khalid Belhajjame, Carole A. Goble, Pinar Karagoz:
Small Is Beautiful: Summarizing Scientific Workflows Using Semantic Annotations. BigData Congress 2013: 318-325 - [c168]Pinar Alper, Khalid Belhajjame, Carole A. Goble, Pinar Karagoz:
Enhancing and abstracting scientific workflow provenance for data publishing. EDBT/ICDT Workshops 2013: 313-318 - [c167]Pinar Alper, Carole A. Goble, Khalid Belhajjame:
On assisting scientific data curation in collection-based dataflows using labels. WORKS@SC 2013: 7-16 - [c166]Sonja Holl, Daniel Garijo, Khalid Belhajjame, Olav Zimmermann, Renato De Giovanni, Matthias Obst, Carole A. Goble:
On specifying and sharing scientific workflow optimization results using research objects. WORKS@SC 2013: 28-37 - [c165]Christian Y. A. Brenninkmeijer, Carole A. Goble, Alasdair J. G. Gray, Paul Groth, Antonis Loizou, Steve Pettifer:
Including Co-referent URIs in a SPARQL Query. COLD 2013 - [c164]Carole A. Goble:
Results May Vary: Reproducibility, Open Science and All That Jazz. LISC@ISWC 2013: 1 - [c163]Jun Zhao, Graham Klyne, Matthew Gamble, Carole A. Goble:
A Checklist-Based Approach for Quality Assessment of Scientific Information. LISC@ISWC 2013: 34-45 - [c162]Carole A. Goble, Alasdair J. G. Gray, Lee Harland, Karen Karapetyan, Antonis Loizou, Ivan Mikhailov, Yrjänä Rankka, Stefan Senger, Valery Tkachenko, Antony J. Williams, Egon L. Willighagen:
Incorporating Commercial and Private Data into an Open Linked Data Platform for Drug Discovery. ISWC (2) 2013: 65-80 - [c161]Katherine Wolstencroft, Stuart Owen, Olga Krebs, Wolfgang Müller, Quyen Nguyen, Jacky L. Snoep, Carole A. Goble:
Semantic Data and Models Sharing in Systems Biology: The Just Enough Results Model and the SEEK Platform. ISWC (2) 2013: 212-227 - [c160]Christian Y. A. Brenninkmeijer, Ian Dunlop, Carole A. Goble, Alasdair J. G. Gray, Steve Pettifer, Robert Stevens:
Computing Identity Co-Reference Across Drug Discovery Datasets. SWAT4LS 2013