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ORCIDGaston H. Gonnet
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- affiliation: ETH Zurich, Switzerland
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2010 – 2019
- 2018
[j57]Adrian M. Altenhoff
, Natasha M. Glover, Clément-Marie Train, Klara Kaleb, Alex Warwick Vesztrocy, David Dylus, Tarcisio M. Farias, Karina Zile, Charles Stevenson, Jiao Long, Henning Redestig, Gaston H. Gonnet, Christophe Dessimoz:
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. Nucleic Acids Res. 46(Database-Issue): D477-D485 (2018)- 2017
- [j56]Clément-Marie Train, Natasha M. Glover, Gaston H. Gonnet, Adrian M. Altenhoff, Christophe Dessimoz:
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference. Bioinform. 33(14): i75-i82 (2017) - 2015
- [j55]Adrian M. Altenhoff, Nives Skunca, Natasha M. Glover, Clément-Marie Train, Anna Sueki, Ivana Pilizota, Kevin Gori, Bartlomiej Tomiczek, Steven Müller, Henning Redestig, Gaston H. Gonnet, Christophe Dessimoz:
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. Nucleic Acids Res. 43(Database-Issue): 240-249 (2015) - 2012
- [j54]Gaston H. Gonnet:
Surprising results on phylogenetic tree building methods based on molecular sequences. BMC Bioinform. 13: 148 (2012) - 2011
- [j53]Adrian M. Altenhoff, Adrian Schneider, Gaston H. Gonnet, Christophe Dessimoz:
OMA 2011: orthology inference among 1000 complete genomes. Nucleic Acids Res. 39(Database-Issue): 289-294 (2011)
2000 – 2009
- 2009
- [j52]Alexander C. J. Roth, Gaston H. Gonnet, Christophe Dessimoz:
Algorithm of OMA for large-scale orthology inference. BMC Bioinform. 10 (2009) - [c40]Gaston H. Gonnet:
Mathematics and Computer Science Serving/Impacting Bioinformatics. ANALCO 2009: 34 - 2008
- [j51]Alexander C. J. Roth, Gaston H. Gonnet, Christophe Dessimoz:
Algorithm of OMA for large-scale orthology inference. BMC Bioinform. 9 (2008) - [c39]Christophe Dessimoz, Daniel Margadant, Gaston H. Gonnet:
DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework. RECOMB 2008: 315-330 - 2007
- [j50]Adrian Schneider, Christophe Dessimoz, Gaston H. Gonnet:
OMA Browser - Exploring orthologous relations across 352 complete genomes. Bioinform. 23(16): 2180-2182 (2007) - [j49]Gina Cannarozzi, Adrian Schneider, Gaston H. Gonnet:
A Phylogenomic Study of Human, Dog, and Mouse. PLoS Comput. Biol. 3(1) (2007) - [j48]Adrian Schneider, Gaston H. Gonnet, Gina Cannarozzi:
SynPAM-A Distance Measure Based on Synonymous Codon Substitutions. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 553-560 (2007) - 2006
- [j47]Christophe Dessimoz, Manuel Gil, Adrian Schneider, Gaston H. Gonnet:
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences. BMC Bioinform. 7: 529 (2006) - [j46]Manuel Gil, Gaston H. Gonnet, Wesley P. Petersen:
A Repetition Test for Pseudo-Random Number Generators. Monte Carlo Methods Appl. 12(5): 385-393 (2006) - [c38]Adrian Schneider, Gaston H. Gonnet, Gina Cannarozzi:
Synonymous Codon Substitution Matrices. International Conference on Computational Science (2) 2006: 630-637 - [c37]Markus T. Friberg, Pedro Gonnet, Yves Barral, Nicol N. Schraudolph, Gaston H. Gonnet:
Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms. WABI 2006: 1-11 - 2005
- [j45]Markus T. Friberg, Peter von Rohr, Gaston H. Gonnet:
Scoring functions for transcription factor binding site prediction. BMC Bioinform. 6: 84 (2005) - [j44]Adrian Schneider, Gina Cannarozzi, Gaston H. Gonnet:
Empirical codon substitution matrix. BMC Bioinform. 6: 134 (2005) - [j43]Manuel Gil, Christophe Dessimoz, Gaston H. Gonnet:
A Dimensionless Fit Measure for Phylogenetic Distance Trees. J. Bioinform. Comput. Biol. 3(6): 1429-1440 (2005) - [c36]Christophe Dessimoz, Gina Cannarozzi, Manuel Gil, Daniel Margadant, Alexander C. J. Roth, Adrian Schneider, Gaston H. Gonnet:
OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements. Comparative Genomics 2005: 61-72 - 2004
- [j42]Gaston H. Gonnet:
Some string matching problems from Bioinformatics which still need better solutions. J. Discrete Algorithms 2(1): 3-15 (2004) - [c35]Gaston H. Gonnet:
The tPI (tRNA Pairing Index), a Mathematical Measure of Repetition in a (Biological) Sequence. IFIP TCS 2004: 1-2 - 2003
- [j41]Bruno Buchberger, Gaston H. Gonnet, Michiel Hazewinkel:
Preface. Ann. Math. Artif. Intell. 38(1-3): 1-2 (2003) - 2002
- [c34]Gaston H. Gonnet:
String Matching Problems from Bioinformatics Which Still Need Better Solutions (Extended Abstract). SPIRE 2002: 27-30 - 2000
- [j40]Gaston H. Gonnet, Michael T. Hallett, Chantal Korostensky, Laurent Bernardin:
Darwin v. 2.0: an interpreted computer language for the biosciences. Bioinform. 16(2): 101-103 (2000) - [j39]Chantal Korostensky, Gaston H. Gonnet:
Using traveling salesman problem algorithms for evolutionary tree construction. Bioinform. 16(7): 619-627 (2000) - [j38]Gaston H. Gonnet, Chantal Korostensky, Steven A. Benner:
Evaluation Measures of Multiple Sequence Alignments. J. Comput. Biol. 7(1-2): 261-276 (2000) - [e2]Gaston H. Gonnet, Daniel Panario, Alfredo Viola:
LATIN 2000: Theoretical Informatics, 4th Latin American Symposium, Punta del Este, Uruguay, April 10-14, 2000, Proceedings. Lecture Notes in Computer Science 1776, Springer 2000, ISBN 3-540-67306-7 [contents]
1990 – 1999
- 1999
- [c33]Gaston H. Gonnet, Allan Bonadio:
Partial Inverse Heuristic for the Approximate Solution of Non-linear Equations. CASC 1999: 159-176 - [c32]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
A Fast Algorithm on Average for All-Against-All Sequence Matching. SPIRE/CRIWG 1999: 16-23 - [c31]Chantal Korostensky, Gaston H. Gonnet:
Near Optimal Multiple Sequence Alignments Using a Traveling Salesman Problem Approach. SPIRE/CRIWG 1999: 105-114 - 1997
- [c30]Gareth Chelvanayagam, Lukas Knecht, Thomas Jenny, Steven A. Benner, Gaston H. Gonnet:
Structure Prediction with Combinatorial Distance Constraints. German Conference on Bioinformatics 1997: 131 - 1996
- [j37]Robert M. Corless, Gaston H. Gonnet, D. E. G. Hare, David J. Jeffrey, Donald E. Knuth:
On the LambertW function. Adv. Comput. Math. 5(1): 329-359 (1996) - [j36]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
Fast Text Searching for Regular Expressions or Automaton Searching on Tries. J. ACM 43(6): 915-936 (1996) - [c29]Gaston H. Gonnet, Steven A. Benner:
Probabilistic Ancestral Sequences and Multiple Alignments. SWAT 1996: 380-391 - 1994
- [j35]Ricardo A. Baeza-Yates, Christian Choffrut, Gaston H. Gonnet:
On Boyer-Moore Automata. Algorithmica 12(4/5): 268-292 (1994) - [j34]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
Fast String Matching with Mismatches. Inf. Comput. 108(2): 187-199 (1994) - [c28]Gaston H. Gonnet:
Wanna Buy an Algorithm? Cheap! or: Algorithms for Text Searching Which Could Have Commercial Value (Abstract). ESA 1994: 10-11 - [c27]Michael B. Monagan, Gaston H. Gonnet:
Signature Functions for Algebraic Numbers. ISSAC 1994: 291-296 - [c26]Gaston H. Gonnet:
Tutorial: Text Dominated Databases, Theory Practice and Experience. PODS 1994: 301-302 - 1993
- [j33]Philippe Flajolet, Gaston H. Gonnet, Claude Puech, J. M. Robson:
Analytic Variations on Quadtrees. Algorithmica 10(6): 473-500 (1993) - 1992
- [j32]Ricardo A. Baeza-Yates, Gaston H. Gonnet, Nivio Ziviani:
Improved Bounds for the Expected Behaviour of AVL Trees. BIT 32(2): 297-315 (1992) - [j31]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
A New Approach to Text Searching. Commun. ACM 35(10): 74-82 (1992) - [j30]Frank G. Garvan, Gaston H. Gonnet:
A Proof for the Two Parameter Q-Cases of the Macdonald-Morris Constant Term Root System Conjecture for S(F4) and S(F4) via Zeilberger's Method. J. Symb. Comput. 14(2/3): 141-178 (1992) - [c25]Trudy Weibel, Gaston H. Gonnet:
An Assume Facility for CAS, with a Sample Implementation for Maple. DISCO 1992: 95-103 - [c24]Gaston H. Gonnet:
Efficient Two-dimensional Searching. SWAT 1992: 317 - [p1]Gaston H. Gonnet, Ricardo A. Baeza-Yates, Tim Snider:
New Indices for Text: Pat Trees and Pat Arrays. Information Retrieval: Data Structures & Algorithms 1992: 66-82 - 1991
- [b2]Bruce W. Char, Keith O. Geddes, Gaston H. Gonnet, Benton L. Leong, Michael B. Monagan:
Maple V - language reference manual. Springer 1991, ISBN 978-0-387-97622-8, pp. I-XV, 1-267 - [b1]Bruce W. Char, Keith O. Geddes, Gaston H. Gonnet, Benton L. Leong, Michael B. Monagan:
Maple V - library reference manual. Springer 1991, ISBN 978-0-387-97592-4, pp. I-XXV, 1-698 - [j29]Walter Cunto, Gaston H. Gonnet, J. Ian Munro, Patricio V. Poblete:
Fringe Analysis for Extquick: An in Situ Distributive External Sorting Algorithm. Inf. Comput. 92(2): 141-160 (1991) - [c23]Trudy Weibel, Gaston H. Gonnet:
An Algebra of Properties. ISSAC 1991: 352-359 - [c22]Philippe Flajolet, Gaston H. Gonnet, Claude Puech, J. M. Robson:
The Analysis of Multidimensional Searching in Quad-Trees. SODA 1991: 100-109 - 1990
- [j28]Gaston H. Gonnet, Ricardo A. Baeza-Yates:
An Analysis of the Karp-Rabin String Matching Algorithm. Inf. Process. Lett. 34(5): 271-274 (1990) - [c21]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
Average Case Analysis of Algorithms using Matrix Recurrences. ICCI 1990: 110-119 - [c20]Ricardo A. Baeza-Yates, Gaston H. Gonnet, Mireille Régnier:
Analysis of Boyer-Moore-Type String Searching Algorithms. SODA 1990: 328-343 - [c19]Ricardo A. Baeza-Yates, Gaston H. Gonnet, Nivio Ziviani:
Expected Behaviour Analysis of AVL Trees. SWAT 1990: 143-159
1980 – 1989
- 1989
- [j27]Bruce W. Char, Keith O. Geddes, Gaston H. Gonnet:
GCDHEU: Heuristic Polynomial GCD Algorithm Based On Integer GCD Computation. J. Symb. Comput. 7(1): 31-48 (1989) - [j26]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
A New Approach to Text Searching (correction). SIGIR Forum 23(3-4): 7 (1989) - [c18]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
Efficient Text Searching of Regular Expressions (Extended Abstract). ICALP 1989: 46-62 - [c17]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
A New Approach to Text Searching. SIGIR 1989: 168-175 - [c16]Ricardo A. Baeza-Yates, Gaston H. Gonnet:
Efficient Text Searching of Regular Expressions. WADS 1989: 1-2 - [e1]Gaston H. Gonnet:
Proceedings of the ACM-SIGSAM 1989 International Symposium on Symbolic and Algebraic Computation, ISSAC '89, Portland, Oregon, USA, July 17-19, 1989. ACM 1989, ISBN 0-89791-325-6 [contents] - 1988
- [j25]Gaston H. Gonnet:
Examples of Maple applied to problems from the American Mathematical Monthly. SIGSAM Bull. 22(2): 8-16 (1988) - [j24]Gaston H. Gonnet, Per-Åke Larson:
External hashing with limited internal storage. J. ACM 35(1): 161-184 (1988) - [c15]Keith O. Geddes, Gaston H. Gonnet, Trevor J. Smedley:
Heuristic Methods for Operations With Algebraic Numbers. (Extended Abstract). ISSAC 1988: 475-480 - [c14]Keith O. Geddes, Gaston H. Gonnet:
A New Algorithm for Computing Symbolic Limits Using Hierarchical Series. ISSAC 1988: 490-495 - 1987
- [j23]Ernest J. H. Chang, Gaston H. Gonnet, Doron Rotem:
On the Costs of Self-Stabilization. Inf. Process. Lett. 24(5): 311-316 (1987) - [c13]Gaston H. Gonnet, Frank Wm. Tompa:
Mind Your Grammar: a New Approach to Modelling Text. VLDB 1987: 339-346 - 1986
- [j22]Bruce W. Char, Gregory J. Fee, Keith O. Geddes, Gaston H. Gonnet, Michael B. Monagan:
A Tutorial Introduction to Maple. J. Symb. Comput. 2(2): 179-200 (1986) - [j21]Gaston H. Gonnet, J. Ian Munro:
Heaps on Heaps. SIAM J. Comput. 15(4): 964-971 (1986) - [c12]Gaston H. Gonnet:
New results for random determination of equivalence of expressions. SYMSAC 1986: 127-131 - [c11]Bruce W. Char, Keith O. Geddes, Gaston H. Gonnet, Beverly J. Marshman, Peter J. Ponzo:
Computer algebra in the undergraduate mathematics classroom. SYMSAC 1986: 135-140 - [c10]Gaston H. Gonnet:
An implementation of operators for symbolic algebra systems. SYMSAC 1986: 239-243 - 1985
- [j20]Nivio Ziviani, Henk J. Olivié, Gaston H. Gonnet:
The Analysis of an Inproved Symmetric Binary B-Tree Algorithm. Comput. J. 28(4): 417-425 (1985) - 1984
- [j19]Gaston H. Gonnet, J. Ian Munro:
The Analysis of Linear Probing Sort by the Use of a New Mathematical Transform. J. Algorithms 5(4): 451-470 (1984) - [c9]Bruce W. Char, Keith O. Geddes, Gaston H. Gonnet:
GCDHEU: Heuristic Polynomial GCD Algorithm Based on Integer GCD Computation. EUROSAM 1984: 285-296 - [c8]Gaston H. Gonnet:
Determining Equivalence of Expressions in Random Polynomial Time (Extended Abstract). STOC 1984: 334-341 - 1983
- [j18]Gaston H. Gonnet, Frank Wm. Tompa:
A Constructive Approach to the Design of Algorithms and Their Data Structures. Commun. ACM 26(11): 912-920 (1983) - [j17]Gaston H. Gonnet:
Balancing Binary Trees by Internal Path Reduction. Commun. ACM 26(12): 1074-1081 (1983) - [j16]Bruce W. Char, Keith O. Geddes, Gaston H. Gonnet:
The maple symbolic computation system. SIGSAM Bull. 17(3-4): 31-42 (1983) - [j15]Gaston H. Gonnet, Bruce W. Char, Keith O. Geddes:
Solution of a general system of equations. SIGSAM Bull. 17(3-4): 48-49 (1983) - [j14]Gaston H. Gonnet, Henk J. Olivié, Derick Wood:
Height-Ratio-Balanced Trees. Comput. J. 26(2): 106-108 (1983) - [j13]Gaston H. Gonnet, J. Ian Munro, Derick Wood:
Direct dynamic structures for some line segment problems. Comput. Vis. Graph. Image Process. 23(2): 178-186 (1983) - [c7]Bruce W. Char, Keith O. Geddes, W. Morven Gentleman, Gaston H. Gonnet:
The design of maple: A compact, portable and powerful computer algebra system. EUROCAL 1983: 101-115 - [c6]Gaston H. Gonnet:
Unstructured Data Bases or Very Efficient Text Searching. PODS 1983: 117-124 - 1982
- [j12]Gaston H. Gonnet, Per-Åke Larson, J. Ian Munro, Doron Rotem, David J. Taylor, Frank Wm. Tompa:
Database Storage Structures Research at the University of Waterloo. IEEE Database Eng. Bull. 5(1): 49-52 (1982) - [j11]Bernhard Eisenbarth, Nivio Ziviani, Gaston H. Gonnet, Kurt Mehlhorn, Derick Wood:
The Theory of Fringe Analysis and Its Application to 2-3 Trees and B-Trees. Inf. Control. 55(1-3): 125-174 (1982) - [c5]Gaston H. Gonnet, J. Ian Munro:
Heaps on Heaps. ICALP 1982: 282-291 - [c4]Gaston H. Gonnet, Per-Åke Larson:
External Hashing with Limited Internal Storage. PODS 1982: 256-261 - 1981
- [j10]Gaston H. Gonnet:
Expected Length of the Longest Probe Sequence in Hash Code Searching. J. ACM 28(2): 289-304 (1981) - [j9]Gaston H. Gonnet, J. Ian Munro, Hendra Suwanda:
Exegesis of Self-Organizing Linear Search. SIAM J. Comput. 10(3): 613-637 (1981) - [j8]Gaston H. Gonnet:
Coding benchmark for Utopia84. ACM SIGPLAN Notices 16(7): 33-34 (1981) - [c3]Gaston H. Gonnet, J. Ian Munro:
A Linear Probing Sort and its Analysis (Preliminary Draft). STOC 1981: 90-95 - 1980
- [j7]Gaston H. Gonnet, Lawrence D. Rogers, J. Alan George:
An Algorithmic and Complexity Analysis of Interpolation Search. Acta Informatica 13: 39-52 (1980) - [j6]Gaston H. Gonnet:
Open-Addressing Hashing with Unequal-Probability Keys. J. Comput. Syst. Sci. 21(3): 354-367 (1980)
1970 – 1979
- 1979
- [j5]Gaston H. Gonnet, J. Ian Munro:
Efficient Ordering of Hash Tables. SIAM J. Comput. 8(3): 463-478 (1979) - [j4]Gaston H. Gonnet, David E. Morgan:
Analysis of Closed Queuing Networks with Periodic Servers. IEEE Trans. Software Eng. 5(6): 653-659 (1979) - [c2]Gaston H. Gonnet, J. Ian Munro, Hendra Suwanda:
Toward Self-Organizing Linear Search (Preliminary Draught). FOCS 1979: 169-174 - 1978
- [j3]Gaston H. Gonnet:
Notes on the Derivation of Asymptotic Expressions from Summations. Inf. Process. Lett. 7(4): 165-169 (1978) - 1977
- [j2]Gaston H. Gonnet, Lawrence D. Rogers:
The Interpolation-Sequential Search Algorithm. Inf. Process. Lett. 6(4): 136-139 (1977) - [c1]Gaston H. Gonnet, J. Ian Munro:
The Analysis of an Improved Hashing Technique. STOC 1977: 113-121 - 1976
- [j1]Gaston H. Gonnet:
Heaps Applied to Event Driven Mechanisms. Commun. ACM 19(7): 417-418 (1976)
Coauthor Index
Ricardo Baeza-Yates
aka: Ricardo A. Baeza-Yates
aka: Ricardo A. Baeza-Yates
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