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ORCIDRobert Giegerich
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- affiliation: Bielefeld University, Germany
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2010 – 2019
- 2017
[j59]Benedikt Löwes, Cédric Chauve
, Yann Ponty, Robert Giegerich:
The BRaliBase dent - a tale of benchmark design and interpretation. Briefings Bioinform. 18(2): 306-311 (2017)- 2016
- [j58]Thomas Gatter, Robert Giegerich, Cédric Saule:
Integrating Pareto Optimization into Dynamic Programming. Algorithms 9(1): 12 (2016) - 2015
- [j57]Cédric Saule, Robert Giegerich:
Pareto optimization in algebraic dynamic programming. Algorithms Mol. Biol. 10: 22 (2015) - [j56]Stefan Janssen, Robert Giegerich:
The RNA shapes studio. Bioinform. 31(3): 423-425 (2015) - [j55]Stefan Janssen, Robert Giegerich:
Ambivalent covariance models. BMC Bioinform. 16: 178:1-178:17 (2015) - 2014
- [j54]Robert Giegerich, Hélène Touzet:
Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms 7(1): 62-144 (2014) - [j53]Georg Sauthoff, Robert Giegerich:
Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Sci. Comput. Program. 87: 2-22 (2014) - [c41]Cédric Saule, Robert Giegerich:
Observations on the Feasibility of Exact Pareto Optimization. CMSR@ECCB 2014: 43-56 - [e3]Robert Giegerich, Ralf Hofestädt, Tim W. Nattkemper:
German conference on bioinformatics 2014, September 28 - October 1, 2014, Bielefeld, Germany. LNI P-235, GI 2014, ISBN 978-3-88579-629-9 [contents] - 2013
- [j52]Georg Sauthoff, Mathias Möhl, Stefan Janssen, Robert Giegerich:
Bellman's GAP - a language and compiler for dynamic programming in sequence analysis. Bioinform. 29(5): 551-560 (2013) - [j51]Stefanie Schirmer, Robert Giegerich:
Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theor. Comput. Sci. 483: 51-67 (2013) - [c40]Benedikt Löwes, Robert Giegerich:
Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. GCB 2013: 110-124 - 2012
- [j50]Mohamed El-Kalioby, Mohamed Abouelhoda, Jan Krüger, Robert Giegerich, Alexander Sczyrba, Dennis P. Wall, Peter J. Tonellato:
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinform. 13(S-17): S22 (2012) - 2011
- [j49]Burkhard Linke, Robert Giegerich, Alexander Goesmann:
Conveyor: a workflow engine for bioinformatic analyses. Bioinform. 27(7): 903-911 (2011) - [j48]Stefan Janssen, Christian Schudoma, Gerhard Steger, Robert Giegerich:
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinform. 12: 429 (2011) - [j47]Robert Giegerich, Christian Höner zu Siederdissen:
Semantics and Ambiguity of Stochastic RNA Family Models. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 499-516 (2011) - [c39]Stefanie Schirmer, Robert Giegerich:
Forest Alignment with Affine Gaps and Anchors. CPM 2011: 104-117 - [c38]Robert Giegerich, Georg Sauthoff:
Yield grammar analysis in the Bellman's GAP compiler. LDTA 2011: 7 - [c37]Georg Sauthoff, Stefan Janssen, Robert Giegerich:
Bellman's GAP: a declarative language for dynamic programming. PPDP 2011: 29-40 - 2010
- [j46]Stefan Janssen, Robert Giegerich:
Faster computation of exact RNA shape probabilities. Bioinform. 26(5): 632-639 (2010) - [j45]Andreas Bremges, Stefanie Schirmer, Robert Giegerich:
Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinform. 11: 222 (2010) - [j44]Claus Brabrand, Robert Giegerich, Anders Møller:
Analyzing ambiguity of context-free grammars. Sci. Comput. Program. 75(3): 176-191 (2010) - [c36]Corinna Theis, Stefan Janssen, Robert Giegerich:
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. WABI 2010: 52-64
2000 – 2009
- 2009
- [j43]Robert Homann, David Fleer, Robert Giegerich, Marc Rehmsmeier:
mkESA: enhanced suffix array construction tool. Bioinform. 25(8): 1084-1085 (2009) - [j42]Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz:
Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinform. 25(24): 3251-3258 (2009) - [j41]Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert:
Alignment of Minisatellite Maps Based on Run-Length Encoding Scheme. J. Bioinform. Comput. Biol. 7(2): 287-308 (2009) - [c35]Peter Steffen, Robert Giegerich, Mathieu Giraud:
GPU Parallelization of Algebraic Dynamic Programming. PPAM (2) 2009: 290-299 - 2008
- [j40]Alexander Sczyrba, Susanne Konermann, Robert Giegerich:
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server. Briefings Bioinform. 9(3): 243-249 (2008) - [j39]Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron:
The BREW workshop series: a stimulating experience in PhD education. Briefings Bioinform. 9(3): 250-253 (2008) - [j38]Julia Herold, Stefan Kurtz, Robert Giegerich:
Efficient computation of absent words in genomic sequences. BMC Bioinform. 9 (2008) - [j37]Stefan Janssen, Jens Reeder, Robert Giegerich:
Shape based indexing for faster search of RNA family databases. BMC Bioinform. 9 (2008) - [j36]Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen, Alexander Sczyrba, Sven Hartmeier, Robert Giegerich:
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinform. 9(S-4) (2008) - [c34]Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert:
Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach. APBC 2008: 261-272 - 2007
- [j35]Jens Reeder, Peter Steffen, Robert Giegerich:
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. Nucleic Acids Res. 35(Web-Server-Issue): 320-324 (2007) - [c33]Janina Reeder, Jens Reeder, Robert Giegerich:
Locomotif: from graphical motif description to RNA motif search. ISMB/ECCB (Supplement of Bioinformatics) 2007: 392-400 - [c32]Claus Brabrand, Robert Giegerich, Anders Møller:
Analyzing Ambiguity of Context-Free Grammars. CIAA 2007: 214-225 - 2006
- [j34]Peter Steffen, Björn Voß, Marc Rehmsmeier, Jens Reeder, Robert Giegerich:
RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinform. 22(4): 500-503 (2006) - [j33]Wolfgang Gerlach, Robert Giegerich:
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinform. 22(6): 762-764 (2006) - [j32]Peter Steffen, Robert Giegerich:
Correction: versatile and declarative dynamic programming using pair algebras. BMC Bioinform. 7: 214 (2006) - [j31]Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz:
Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinform. 7: 389 (2006) - [j30]Philipp N. Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich:
XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinform. 7: 490 (2006) - [j29]Peter Steffen, Robert Giegerich:
Table design in dynamic programming. Inf. Comput. 204(9): 1325-1345 (2006) - [j28]Ketil Malde, Robert Giegerich:
Calculating PSSM probabilities with lazy dynamic programming. J. Funct. Program. 16(1): 75-81 (2006) - [c31]Janina Reeder, Robert Giegerich:
A graphical programming system for molecular motif search. GPCE 2006: 131-140 - [c30]Robert Giegerich, Peter Steffen:
Challenges in the compilation of a domain specific language for dynamic programming. SAC 2006: 1603-1609 - 2005
- [j27]Jens Reeder, Robert Giegerich:
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. Bioinform. 21(17): 3516-3523 (2005) - [j26]Janina Reeder, Peter Steffen, Robert Giegerich:
Effective ambiguity checking in biosequence analysis. BMC Bioinform. 6: 153 (2005) - [j25]Peter Steffen, Robert Giegerich:
Versatile and declarative dynamic programming using pair algebras. BMC Bioinform. 6: 224 (2005) - 2004
- [j24]Björn Voss, Carsten Meyer, Robert Giegerich:
Evaluating the predictability of conformational switching in RNA. Bioinform. 20(10): 1573-1582 (2004) - [j23]Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich:
GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinform. 20(12): 1964-1965 (2004) - [j22]Jens Reeder, Robert Giegerich:
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinform. 5: 104 (2004) - [j21]Paul P. Gardner, Robert Giegerich:
A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinform. 5: 140 (2004) - [j20]Michael Beckstette, Jens T. Mailänder, Richard J. Marhöfer, Alexander Sczyrba, Enno Ohlebusch, Robert Giegerich, Paul M. Selzer:
Genlight: Interactive high-throughput sequence analysis and comparative genomics. J. Integr. Bioinform. 1(1) (2004) - [j19]Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich:
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Res. 32(Web-Server-Issue): 301-304 (2004) - [j18]Robert Giegerich, Carsten Meyer, Peter Steffen:
A discipline of dynamic programming over sequence data. Sci. Comput. Program. 51(3): 215-263 (2004) - [j17]Matthias Höchsmann, Björn Voss, Robert Giegerich:
Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 1(1): 53-62 (2004) - [c29]Michael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz:
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics 2004: 53-64 - [e2]Robert Giegerich, Jens Stoye:
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 4-6, 2004. LNI P-53, GI 2004, ISBN 3-88579-382-2 [contents] - 2003
- [j16]Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich:
RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Res. 31(13): 3767-3770 (2003) - [j15]Robert Giegerich, Stefan Kurtz, Jens Stoye:
Efficient implementation of lazy suffix trees. Softw. Pract. Exp. 33(11): 1035-1049 (2003) - [c28]Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz:
Local Similarity in RNA Secondary Structures. CSB 2003: 159-168 - [c27]Björn Voß, Robert Giegerich:
Prediction of conformational switching in RNA. German Conference on Bioinformatics 2003: 173-178 - 2002
- [j14]Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich:
PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinform. 18(1): 124-129 (2002) - [c26]Robert Giegerich, Carsten Meyer:
Algebraic Dynamic Programming. AMAST 2002: 349-364 - [c25]Robert Giegerich:
Towards A Discipline of Dynamic Programming. GI Jahrestagung 2002: 3-44 - [c24]Robert Giegerich, Peter Steffen:
Implementing Algebraic Dynamic Programming in the Functional and the Imperative Programming Paradigm. MPC 2002: 1-20 - 2001
- [j13]Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich:
Minimum conflict: a divide-and-conquer approach to phylogeny estimation. Bioinform. 17(12): 1168-1178 (2001) - [c23]Dirk Evers, Robert Giegerich:
Reducing the Conformation Space in RNA Structure Prediction. German Conference on Bioinformatics 2001: 118-124 - 2000
- [j12]Robert Giegerich:
A systematic approach to dynamic programming in bioinformatics. Bioinform. 16(8): 665-677 (2000) - [c22]Robert Giegerich:
Explaining and Controlling Ambiguity in Dynamic Programming. CPM 2000: 46-59 - [c21]Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich:
Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238
1990 – 1999
- 1999
- [j11]Dirk Evers, Robert Giegerich:
RNA movies: visualizing RNA secondary structure spaces. Bioinform. 15(1): 32-37 (1999) - [j10]Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing:
Semantic Matching for Left-Linear Convergent Rewrite Systems. J. Funct. Log. Program. 1999(11) (1999) - [c20]Robert Giegerich, Dirk Haase, Marc Rehmsmeier:
Prediction and Visualization of Structural Switches in RNA. Pacific Symposium on Biocomputing 1999: 126-137 - [c19]Robert Giegerich, Stefan Kurtz, Jens Stoye:
Efficient Implementation of Lazy Suffix Trees. WAE 1999: 30-42 - 1998
- [c18]Robert Giegerich, Dieter Lorenz:
ViSeL - An interactive course in DNA Sequencing. Workshop Multimedia-Systeme, GI Jahrestagung 1998: 53-65 - 1997
- [j9]Robert Giegerich, Stefan Kurtz:
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19(3): 331-353 (1997) - [c17]Dirk Evers, Robert Giegerich:
RNA Movies: Visualizing RNA secondary structure spaces. German Conference on Bioinformatics 1997: 143 - [c16]Henning Hermjakob, Robert Giegerich, Walter Arnold:
RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. ISMB 1997: 131-139 - 1996
- [j8]Christian Büschking, Robert Giegerich:
Sequenzanalyse mit verteilten Ressourcen: Ein WWW-basierter Kurs. Informationstechnik Tech. Inform. 38(5): 39-46 (1996) - [c15]Robert Giegerich, Christian Büschking:
Sequence Analysis with Distributed Resources: A WWW-Based Course. German Conference on Bioinformatics 1996: 208 - [c14]Robert Giegerich, Folker Meyer, Chris Schleiermacher:
GeneFisher-Software Support for the Detection of Postulated Genes. ISMB 1996: 68-77 - 1995
- [j7]Robert Giegerich, Stefan Kurtz:
A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25(2-3): 187-218 (1995) - [c13]Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing:
A New Strategy for Semantic Matching. PLILP 1995: 81-96 - 1994
- [c12]Robert Giegerich, Stefan Kurtz:
Suffix Trees in the Functional Programming Paradigm. ESOP 1994: 225-240 - 1992
- [e1]Robert Giegerich, Susan L. Graham:
Code Generation - Concepts, Tools, Techniques, Workshop on Code Generation, Dagstuhl, Germany, 20-24 May 1991. Workshops in Computing, Springer 1992, ISBN 3-540-19757-5 [contents] - 1991
- [j6]Robert Giegerich, Enno Ohlebusch:
An Implicit Representation of Infinite Sequences of Terms. Bull. EATCS 43: 174-182 (1991) - [c11]Robert Giegerich:
Considerate Code Selection. Code Generation 1991: 51-65 - [c10]Robert Giegerich, Willi Schepper:
Der Studiengang Naturwissenschaftliche Informatik an der Universität Bielefeld. Physik und Informatik 1991: 180-184 - 1990
- [j5]Robert Giegerich:
Code Selection by Inversion of Order-Sorted Derivors. Theor. Comput. Sci. 73(2): 177-211 (1990) - [c9]Robert Giegerich:
On the Structure of Verifiable Code Generator Specifications. PLDI 1990: 1-8
1980 – 1989
- 1988
- [j4]Robert Giegerich:
Composition and Evaluation of Attribute Coupled Grammars. Acta Informatica 25(4): 355-423 (1988) - [c8]Robert Giegerich, Karl Schmal:
Code Selection Techniques: Pattern Matching, Tree Parsing, and Inversion of Derivors. ESOP 1988: 247-268 - 1987
- [j3]Harald Ganzinger, Robert Giegerich:
A note on termination in combinatiosn of heterogeneous term rewriting systems. Bull. EATCS 31: 22-27 (1987) - 1985
- [c7]Robert Giegerich:
Logic specification of code generation techniques. Programs as Data Objects 1985: 96-111 - 1984
- [c6]Harald Ganzinger, Robert Giegerich:
Attribute coupled grammars. SIGPLAN Symposium on Compiler Construction 1984: 157-170 - 1983
- [j2]Robert Giegerich:
A Formal Framework for the Derivation of Machine-Specific Optimizers. ACM Trans. Program. Lang. Syst. 5(3): 478-498 (1983) - 1982
- [c5]Robert Giegerich:
Automatic Generation of Machine Specific Code Optimizers. POPL 1982: 75-81 - [c4]Robert Giegerich:
A Formal Model of Instruction Set Semantics. Fachtagung über Programmiersprachen 1982: 177-190 - [c3]Harald Ganzinger, Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm:
A Truly Generative Semantics-Directed Compiler Generator. SIGPLAN Symposium on Compiler Construction 1982: 172-184 - 1981
- [b1]Robert Giegerich:
Automatische Erzeugung von Maschinencode-Optimierern. Technical University Munich, Germany, 1981, pp. 1-187 - [c2]Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm:
Invariance of Approximate Semantics with Respect to Program Transformations. GI Jahrestagung 1981: 1-10
1970 – 1979
- 1978
- [j1]Robert Giegerich, Reinhard Wilhelm:
Counter-One-Pass Features in One-Pass Compilation: A Formalization Using Attribute Grammars. Inf. Process. Lett. 7(6): 279-284 (1978) - 1977
- [c1]Robert Giegerich, Reinhard Wilhelm:
Implementierbarkeit attributierter Grammatiken. GI Jahrestagung 1977: 17-36
Coauthor Index
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