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ORCIDGabriel Valiente
Person information
- affiliation: Polytechnic University of Catalonia, Barcelona, Spain
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2020 – today
- 2024
[j42]Elahe Khayatian
, Gabriel Valiente, Louxin Zhang:
The k-Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees. J. Comput. Biol. 31(4): 328-344 (2024)- [c28]Alberto José Ferrari, Valeria A. Leoni, Graciela L. Nasini, Gabriel Valiente:
Minimizing External Vertices in Hypergraph Orientations. ISCO 2024: 125-136 - 2023
- [c27]Elahe Khayatian, Gabriel Valiente, Louxin Zhang:
The K-Robinson Foulds Measures for Labeled Trees. RECOMB-CG 2023: 146-161 - 2022
- [j41]Gabriel Valiente:
Adjacency Maps and Efficient Graph Algorithms. Algorithms 15(2): 67 (2022) - 2021
- [b3]Gabriel Valiente:
Algorithms on Trees and Graphs - With Python Code, Second Edition. Texts in Computer Science, Springer 2021, ISBN 978-3-030-81884-5, pp. 3-285 - [j40]Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
The Generalized Robinson-Foulds Distance for Phylogenetic Trees. J. Comput. Biol. 28(12): 1181-1195 (2021) - 2020
- [j39]Adrià Alcalà, Ricardo Alberich, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
AligNet: alignment of protein-protein interaction networks. BMC Bioinform. 21-S(6): 265 (2020) - [j38]Mercè Llabrés, Gabriel Riera, Francesc Rosselló, Gabriel Valiente:
Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. BMC Bioinform. 21-S(6): 434 (2020) - [c26]Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
A Generalized Robinson-Foulds Distance for Clonal Trees, Mutation Trees, and Phylogenetic Trees and Networks. BCB 2020: 13:1-13:10
2010 – 2019
- 2018
- [j37]Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente:
Unbiased Taxonomic Annotation of Metagenomic Samples. J. Comput. Biol. 25(3): 348-360 (2018) - 2017
- [j36]Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole:
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. Bioinform. 33(11): 1730-1732 (2017) - [c25]Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente:
Unbiased Taxonomic Annotation of Metagenomic Samples. ISBRA 2017: 162-173 - 2015
- [j35]Bruno Fosso, Monica Santamaria, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole:
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. BMC Bioinform. 16: 203:1-203:11 (2015) - 2014
- [j34]Daniel Alonso-Alemany, Aurélien Barré, Stefano Beretta, Paola Bonizzoni, Macha Nikolski, Gabriel Valiente:
Further Steps in TANGO: improved taxonomic assignment in metagenomics. Bioinform. 30(1): 17-23 (2014) - 2012
- [j33]Gabriel Valiente, Graziano Pesole:
Editorial. Briefings Bioinform. 13(6): 645 (2012) - [j32]Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole:
Reference databases for taxonomic assignment in metagenomics. Briefings Bioinform. 13(6): 682-695 (2012) - [j31]Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente:
Faster computation of the Robinson-Foulds distance between phylogenetic networks. Inf. Sci. 197: 77-90 (2012) - 2011
- [j30]Paolo Ribeca, Gabriel Valiente:
Computational challenges of sequence classification in microbiomic data. Briefings Bioinform. 12(6): 614-625 (2011) - [j29]José Carlos Clemente, Jesper Jansson, Gabriel Valiente:
Flexible taxonomic assignment of ambiguous sequencing reads. BMC Bioinform. 12: 8 (2011) - [j28]Moshe Lewenstein, Gabriel Valiente:
CPM 2006. J. Discrete Algorithms 9(4): 313 (2011) - [j27]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Comparison of Galled Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 410-427 (2011) - 2010
- [j26]Mallika Veeramalai, David R. Gilbert, Gabriel Valiente:
An optimized TOPS+ comparison method for enhanced TOPS models. BMC Bioinform. 11: 138 (2010) - [j25]Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente:
Characterization of phylogenetic networks with NetTest. BMC Bioinform. 11: 268 (2010) - [j24]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Path lengths in tree-child time consistent hybridization networks. Inf. Sci. 180(3): 366-383 (2010) - [c24]Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente:
Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks. CPM 2010: 190-201 - [c23]José Carlos Clemente, Jesper Jansson, Gabriel Valiente:
Accurate Taxonomic Assignment of Short Pyrosequencing Reads. Pacific Symposium on Biocomputing 2010: 3-9
2000 – 2009
- 2009
- [b2]Gabriel Valiente:
Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R. Chapman and Hall / CRC mathematical and computational biology series, CRC Press 2009, ISBN 978-1-4200-6973-0, pp. 1-352 - [j23]Ricardo Alberich, Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
An algebraic metric for phylogenetic trees. Appl. Math. Lett. 22(9): 1320-1324 (2009) - [j22]José Carlos Clemente, Kazuho Ikeo, Gabriel Valiente, Takashi Gojobori:
Optimized ancestral state reconstruction using Sankoff parsimony. BMC Bioinform. 10 (2009) - [j21]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 46-61 (2009) - [j20]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 454-469 (2009) - [j19]Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
Comparison of Tree-Child Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 6(4): 552-569 (2009) - [j18]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
On Nakhleh's Metric for Reduced Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 6(4): 629-638 (2009) - [i12]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete. CoRR abs/0902.4640 (2009) - [i11]Francesc Rosselló, Gabriel Valiente:
All that Glisters is not Galled. CoRR abs/0904.2448 (2009) - [i10]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Comparison of Galled Trees. CoRR abs/0906.1166 (2009) - 2008
- [j17]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
A distance metric for a class of tree-sibling phylogenetic networks. Bioinform. 24(13): 1481-1488 (2008) - [j16]Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
A perl package and an alignment tool for phylogenetic networks. BMC Bioinform. 9 (2008) - [j15]Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
Extended Newick: it is time for a standard representation of phylogenetic networks. BMC Bioinform. 9 (2008) - [j14]Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson:
Seeded Tree Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 503-513 (2008) - [c22]Michael Sammeth, Gabriel Valiente, Roderic Guigó:
Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. RECOMB 2008: 372-395 - [i9]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks. CoRR abs/0803.2904 (2008) - [i8]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Nodal distances for rooted phylogenetic trees. CoRR abs/0806.2035 (2008) - [i7]Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
Path lengths in tree-child time consistent hybridization networks. CoRR abs/0807.0087 (2008) - 2007
- [j13]José Carlos Clemente, Kenji Satou, Gabriel Valiente:
Phylogenetic reconstruction from non-genomic data. Bioinform. 23(2): 110-115 (2007) - [j12]Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente:
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. BMC Bioinform. 8 (2007) - [j11]Ryuhei Uehara, Gabriel Valiente:
Linear structure of bipartite permutation graphs and the longest path problem. Inf. Process. Lett. 103(2): 71-77 (2007) - [c21]Liliana Félix, Francesc Rosselló, Gabriel Valiente:
Reconstructing Metabolic Pathways by Bidirectional Chemical Search. CMSB 2007: 217-232 - [c20]Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson:
Seeded Tree Alignment and Planar Tanglegram Layout. WABI 2007: 98-110 - [p1]Gabriel Valiente:
Efficient Algorithms on Trees and Graphs with Unique Node Labels. Applied Graph Theory in Computer Vision and Pattern Recognition 2007: 137-149 - [i6]Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
Tripartitions do not always discriminate phylogenetic networks. CoRR abs/0707.2376 (2007) - [i5]Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
Comparison of Tree-Child Phylogenetic Networks. CoRR abs/0708.3499 (2007) - [i4]Gabriel Cardona, Francesc Rosselló, Gabriel Valiente:
A Perl Package and an Alignment Tool for Phylogenetic Networks. CoRR abs/0711.3628 (2007) - 2006
- [j10]Francesc Rosselló, Gabriel Valiente:
An algebraic view of the relation between largest common subtrees and smallest common supertrees. Theor. Comput. Sci. 362(1-3): 33-53 (2006) - [e2]Moshe Lewenstein, Gabriel Valiente:
Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings. Lecture Notes in Computer Science 4009, Springer 2006, ISBN 3-540-35455-7 [contents] - [i3]Francesc Rosselló, Gabriel Valiente:
An Algebraic View of the Relation between Largest Common Subtrees and Smallest Common Supertrees. CoRR abs/cs/0604108 (2006) - [i2]Francesc Rosselló, Gabriel Valiente:
The transposition distance for phylogenetic trees. CoRR abs/q-bio/0604024 (2006) - 2005
- [j9]Roderic D. M. Page, Gabriel Valiente:
An edit script for taxonomic classifications. BMC Bioinform. 6: 208 (2005) - [j8]Gabriel Valiente:
Constrained tree inclusion. J. Discrete Algorithms 3(2-4): 431-447 (2005) - [c19]Francesc Rosselló, Gabriel Valiente:
Graph Transformation in Molecular Biology. Formal Methods in Software and Systems Modeling 2005: 116-133 - [c18]Liliana Félix, Gabriel Valiente, Francesc Rosselló:
Optimal Artificial Chemistries and Metabolic Pathways. ENC 2005: 298-305 - [c17]Gabriel Valiente:
A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees. SPIRE 2005: 370-375 - [i1]Mercè Llabrés, Jairo Rocha, Francesc Rosselló, Gabriel Valiente:
On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa. CoRR abs/cs/0505086 (2005) - 2004
- [j7]Gabriel Valiente:
Trading uninitialized space for time. Inf. Process. Lett. 92(1): 9-13 (2004) - [c16]Gabriel Valiente:
On the Algorithm of Berztiss for Tree Pattern Matching. ENC 2004: 43-49 - [c15]Francesc Rosselló, Gabriel Valiente:
Analysis of Metabolic Pathways by Graph Transformation. ICGT 2004: 70-82 - [c14]Liliana Félix, Francesc Rosselló, Gabriel Valiente:
Artificial Chemistries and Metabolic Pathways. Spanish Bioinformatics Conference 2004: 56-59 - [c13]Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
On Supertrees of Phylogenetic Trees. Spanish Bioinformatics Conference 2004: 142-145 - [c12]Francesc Rosselló, Gabriel Valiente:
Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation. GraBaTs 2004: 157-166 - [e1]Xavier Messeguer, Gabriel Valiente:
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004. Technical University of Catalonia, Barcelona 2004, ISBN 84-7653-863-4 [contents] - 2003
- [c11]Gabriel Valiente:
Constrained Tree Inclusion. CPM 2003: 361-371 - [c10]Gabriel Valiente:
A New Simple Algorithm for the Maximum-Weight Independent Set Problem on Circle Graphs. ISAAC 2003: 129-137 - 2002
- [b1]Gabriel Valiente:
Algorithms on Trees and Graphs. Springer 2002, ISBN 3-540-43550-6 - [j6]Javier Larrosa, Gabriel Valiente:
Constraint Satisfaction Algorithms for Graph Pattern Matching. Math. Struct. Comput. Sci. 12(4): 403-422 (2002) - 2001
- [j5]Mirtha-Lina Fernández, Gabriel Valiente:
A graph distance metric combining maximum common subgraph and minimum common supergraph. Pattern Recognit. Lett. 22(6/7): 753-758 (2001) - [c9]Gabriel Valiente:
A General Method for Graph Isomorphism. FCT 2001: 428-431 - [c8]Gabriel Valiente:
An Efficient Bottom-Up Distance between Trees. SPIRE 2001: 212-219 - 2000
- [c7]Jordi Cortadella, Gabriel Valiente:
A Relational View of Subgraph Isomorphism. RelMiCS 2000: 45-54 - [c6]Ricardo A. Baeza-Yates, Gabriel Valiente:
An Image Similarity Measure Based on Graph Matching. SPIRE 2000: 28-38
1990 – 1999
- 1999
- [j4]Peter Burmeister, Miquel Monserrat, Francesc Rosselló, Gabriel Valiente:
Algebraic Transformation of Unary Partial Algebras II: Single-Pushout Approach. Theor. Comput. Sci. 216(1-2): 311-362 (1999) - 1998
- [c5]Hans-Jörg Kreowski, Gabriel Valiente:
Redundancy and Subsumption in High-Level Replacement Systems. TAGT 1998: 215-227 - 1997
- [j3]Peter Burmeister, Francesc Rosselló, Joan Torrens, Gabriel Valiente:
Algebraic Transformation of Unary Partial Algebras I: Double-Pushout Approach. Theor. Comput. Sci. 184(1-2): 145-193 (1997) - 1995
- [c4]Miquel Monserrat, Francesc Rosselló, Joan Torrens, Gabriel Valiente:
Hypergraph rewriting using conformisms. SEGRAGRA 1995: 207-214 - 1994
- [c3]Ricardo Alberich, Peter Burmeister, Francesc Rosselló, Gabriel Valiente, Boleslaw Wojdylo:
A Partial Algebras Approach to Graph Transformation. TAGT 1994: 1-15 - 1993
- [c2]Gabriel Valiente:
Input-Driven Control of Rule-Based Expert Systems. ISMIS 1993: 86-95 - 1992
- [j2]Gabriel Valiente:
Using Layered Support Graphs for Verifying External Adequacy in Rule-Based Expert Systems. SIGART Bull. 3(1): 20-24 (1992) - [c1]Gabriel Valiente:
On Knowledge Base Redundancy Under Uncertain Reasoning. IPMU 1992: 321-329 - 1991
- [j1]Gabriel Valiente:
On Being a Machine: A Review. AI Mag. 12(4): 96-97 (1991)
Coauthor Index
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last updated on 2024-10-07 21:17 CEST by the dblp team
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