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@inproceedings{DBLP:conf/bird/Al-ShalalfaA08,
  author       = {Mohammed Al{-}Shalalfa and
                  Reda Alhajj},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Motif Location Prediction by Divide and Conquer},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {102--113},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_8},
  doi          = {10.1007/978-3-540-70600-7\_8},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/Al-ShalalfaA08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/AlthausC08,
  author       = {Ernst Althaus and
                  Stefan Canzar},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {{LASA:} {A} Tool for Non-heuristic Alignment of Multiple Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {489--498},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_38},
  doi          = {10.1007/978-3-540-70600-7\_38},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/AlthausC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/AntoGNG08,
  author       = {M. A. Lijo Anto and
                  G. Gopakumar and
                  Achuthsankar S. Nair and
                  Indira Ghosh},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {{GENFOCS} - {A} Comparative Tool on Gene Finding with Sensitivity
                  and Specificity},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {509--516},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_40},
  doi          = {10.1007/978-3-540-70600-7\_40},
  timestamp    = {Tue, 29 Oct 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/AntoGNG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/AntoniouIJR08,
  author       = {Pavlos Antoniou and
                  Costas S. Iliopoulos and
                  Inuka Jayasekera and
                  M. Sohel Rahman},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Implementation of a Swap Matching Algorithm Using a Graph Theoretic
                  Model},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {446--455},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_34},
  doi          = {10.1007/978-3-540-70600-7\_34},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/AntoniouIJR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/BhattacharyyaB08,
  author       = {Ramkishore Bhattacharyya and
                  Balaram Bhattacharyya},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Gene Expression Mining for Cohesive Pattern Discovery},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {221--234},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_17},
  doi          = {10.1007/978-3-540-70600-7\_17},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/BhattacharyyaB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/BoevaT08,
  author       = {Veselka Boeva and
                  Elena Tsiporkova},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A Novel Adaptive Multiple Imputation Algorithm},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {193--206},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_15},
  doi          = {10.1007/978-3-540-70600-7\_15},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/BoevaT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Cattani08,
  author       = {Carlo Cattani},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Complex Representation of {DNA} Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {528--537},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_42},
  doi          = {10.1007/978-3-540-70600-7\_42},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/Cattani08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CattaniS08,
  author       = {Carlo Cattani and
                  Massimo Scalia},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Wavelet Analysis of Impulses in Axon Physiology},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {538--545},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_43},
  doi          = {10.1007/978-3-540-70600-7\_43},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/CattaniS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CoditaP08,
  author       = {Irina Codita and
                  Stefan Pusca},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {{PTF} Model for Evaluating the Relationships between the {VAC} and
                  Antimicrobial Resistance in Human Communities},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {587--593},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_49},
  doi          = {10.1007/978-3-540-70600-7\_49},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/CoditaP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CoelhoM08,
  author       = {Lu{\'{\i}}s Pedro Coelho and
                  Robert F. Murphy},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Identifying Subcellular Locations from Images of Unknown Resolution},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {235--242},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_18},
  doi          = {10.1007/978-3-540-70600-7\_18},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/CoelhoM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DalzielYSGF08,
  author       = {Ben Dalziel and
                  Hui Yang and
                  Rahul Singh and
                  Matthew Gormley and
                  Susan Fisher},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {{XMAS:} An Experiential Approach for Visualization, Analysis, and
                  Exploration of Time Series Microarray Data},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {16--31},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_2},
  doi          = {10.1007/978-3-540-70600-7\_2},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/DalzielYSGF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DobsonMMCS08,
  author       = {Richard J. B. Dobson and
                  Patricia B. Munroe and
                  Charles A. Mein and
                  Mark J. Caulfield and
                  Mansoor A. S. Saqi},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Combining Protein-Protein Interaction {(PPI)} Network and Sequence
                  Attributes for Predicting Hypertension Related Proteins},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {377--391},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_28},
  doi          = {10.1007/978-3-540-70600-7\_28},
  timestamp    = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/DobsonMMCS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ElloumiM08,
  author       = {Mourad Elloumi and
                  Ahmed Mokaddem},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {An Algorithm for Multiple and Global Alignments},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {479--488},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_37},
  doi          = {10.1007/978-3-540-70600-7\_37},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/ElloumiM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FedericoP08,
  author       = {Maria Federico and
                  Nadia Pisanti},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Suffix Tree Characterization of Maximal Motifs in Biological Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {456--465},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_35},
  doi          = {10.1007/978-3-540-70600-7\_35},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/FedericoP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FiondaPPR08,
  author       = {Valeria Fionda and
                  Luigi Palopoli and
                  Simona Panni and
                  Simona E. Rombo},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Protein-Protein Interaction Network Querying by a "Focus and Zoom"
                  Approach},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {331--346},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_25},
  doi          = {10.1007/978-3-540-70600-7\_25},
  timestamp    = {Mon, 18 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/FiondaPPR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FlouriIRVV08,
  author       = {Tom{\'{a}}s Flouri and
                  Costas S. Iliopoulos and
                  Mohammad Sohel Rahman and
                  Ladislav Vagner and
                  Michal Vor{\'{a}}cek},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Indexing Factors in {DNA/RNA} Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {436--445},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_33},
  doi          = {10.1007/978-3-540-70600-7\_33},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/FlouriIRVV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/GanKAS08,
  author       = {Xiangchao Gan and
                  Leonidas Kapsokalivas and
                  Andreas Alexander Albrecht and
                  Kathleen Steinh{\"{o}}fel},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A Symmetry-Free Subspace for Ab initioProtein Folding Simulations},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {128--139},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_10},
  doi          = {10.1007/978-3-540-70600-7\_10},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/GanKAS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HalachevS08,
  author       = {Mihail Halachev and
                  Nematollaah Shiri},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Fast Structured Motif Search in {DNA} Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {58--73},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_5},
  doi          = {10.1007/978-3-540-70600-7\_5},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/HalachevS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HemertB08,
  author       = {Jano I. van Hemert and
                  Richard A. Baldock},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Matching Spatial Regions with Combinations of Interacting Gene Expression
                  Patterns},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {347--361},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_26},
  doi          = {10.1007/978-3-540-70600-7\_26},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/HemertB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HernandezDH08,
  author       = {Jos{\'{e}} Crisp{\'{\i}}n Hern{\'{a}}ndez Hern{\'{a}}ndez and
                  B{\'{e}}atrice Duval and
                  Jin{-}Kao Hao},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {SVM-Based Local Search for Gene Selection and Classification of Microarray
                  Data},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {499--508},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_39},
  doi          = {10.1007/978-3-540-70600-7\_39},
  timestamp    = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/HernandezDH08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KalsiPT08,
  author       = {Petri Kalsi and
                  Hannu Peltola and
                  Jorma Tarhio},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Comparison of Exact String Matching Algorithms for Biological Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {417--426},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_31},
  doi          = {10.1007/978-3-540-70600-7\_31},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/KalsiPT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KambolA08,
  author       = {Roziah Kambol and
                  M. Faris Abtholuddin},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Genome Structure and Characterisation of an Endogenous Retrovirus
                  from the Zebrafish Genome Project Database},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {392--403},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_29},
  doi          = {10.1007/978-3-540-70600-7\_29},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/KambolA08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KapsokalivasGAS08,
  author       = {Leonidas Kapsokalivas and
                  Xiangchao Gan and
                  Andreas Alexander Albrecht and
                  Kathleen Steinh{\"{o}}fel},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Two Local Search Methods for Protein Folding Simulation in the {HP}
                  and the {MJ} Lattice Models},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {167--179},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_13},
  doi          = {10.1007/978-3-540-70600-7\_13},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/KapsokalivasGAS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KhodabakhshiMRG08,
  author       = {Alireza Hadj Khodabakhshi and
                  J{\'{a}}n Manuch and
                  Arash Rafiey and
                  Arvind Gupta},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A Robust Class of Stable Proteins in the 2D {HPC} Model},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {180--192},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_14},
  doi          = {10.1007/978-3-540-70600-7\_14},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/KhodabakhshiMRG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KontosB08,
  author       = {Kevin Kontos and
                  Gianluca Bontempi},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Nested q-Partial Graphs for Genetic Network Inference from "Small
                  n, Large p" Microarray Data},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {273--287},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_21},
  doi          = {10.1007/978-3-540-70600-7\_21},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/KontosB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KurbatovaV08,
  author       = {Natalja Kurbatova and
                  Juris Viksna},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Exploration of Evolutionary Relations between Protein Structures},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {154--166},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_12},
  doi          = {10.1007/978-3-540-70600-7\_12},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/KurbatovaV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LeeS08,
  author       = {Timothy Lee and
                  Rahul Singh},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive
                  Methods and Mass Spectrometry-Based Algorithmic Approach},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {140--153},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_11},
  doi          = {10.1007/978-3-540-70600-7\_11},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/LeeS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LianHS08,
  author       = {Chen Na Lian and
                  Mihail Halachev and
                  Nematollaah Shiri},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Searching for Supermaximal Repeats in Large {DNA} Sequences},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {87--101},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_7},
  doi          = {10.1007/978-3-540-70600-7\_7},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/LianHS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LioBF08,
  author       = {Pietro Li{\`{o}} and
                  Matteo Brilli and
                  Renato Fani},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing
                  Proteins Case Studies},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {207--220},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_16},
  doi          = {10.1007/978-3-540-70600-7\_16},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/LioBF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LiuLWDW08,
  author       = {Bin Liu and
                  Lei Lin and
                  Xiaolong Wang and
                  Qiwen Dong and
                  Xuan Wang},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A Discriminative Method for Protein Remote Homology Detection Based
                  on N-nary Profiles},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {74--86},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_6},
  doi          = {10.1007/978-3-540-70600-7\_6},
  timestamp    = {Tue, 10 Dec 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/LiuLWDW08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MainzPMWKH08,
  author       = {Dominic Mainz and
                  Ingo Paulsen and
                  Indra Mainz and
                  Katrin Weller and
                  Jochen Kohl and
                  Arndt von Haeseler},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Knowledge Acquisition Focused Cooperative Development of Bio-ontologies
                  - {A} Case Study with BIO2Me},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {258--272},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_20},
  doi          = {10.1007/978-3-540-70600-7\_20},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/MainzPMWKH08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Marshall08,
  author       = {Roger Marshall},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Gene Machine{\textcopyright} - {A} Hardware/Software Platform for
                  Analyzing Genome Data},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {517--527},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_41},
  doi          = {10.1007/978-3-540-70600-7\_41},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/Marshall08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MartinN08,
  author       = {Christian Martin and
                  Tim W. Nattkemper},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A Tree Index to Support Clustering Based Exploratory Data Analysis},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {1--15},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_1},
  doi          = {10.1007/978-3-540-70600-7\_1},
  timestamp    = {Wed, 09 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/MartinN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MocanuS08,
  author       = {Elena Mocanu and
                  Paul E. Sterian},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Acquisition and Algorithms for Fluorescence Applications},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {546--555},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_44},
  doi          = {10.1007/978-3-540-70600-7\_44},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/MocanuS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MoisaM08,
  author       = {Trandafir Moisa and
                  Cristian Morarescu},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {{VEMS-TM} - {A} Management Infrastructure},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {581--586},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_48},
  doi          = {10.1007/978-3-540-70600-7\_48},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/MoisaM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MucksteinTBHVSH08,
  author       = {Ulrike M{\"{u}}ckstein and
                  Hakim Tafer and
                  Stephan H. Bernhart and
                  Maribel Hernandez{-}Rosales and
                  J{\"{o}}rg Vogel and
                  Peter F. Stadler and
                  Ivo L. Hofacker},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Translational Control by {RNA-RNA} Interaction: Improved Computation
                  of {RNA-RNA} Binding Thermodynamics},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {114--127},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_9},
  doi          = {10.1007/978-3-540-70600-7\_9},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/MucksteinTBHVSH08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/NinulescuNS08,
  author       = {Valerica Ninulescu and
                  Vladua{-}Bogdan Nicolae and
                  Andreea Sterian},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Quantum Well Lasers for Medical Industry},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {563--570},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_46},
  doi          = {10.1007/978-3-540-70600-7\_46},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/NinulescuNS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PhuongT08,
  author       = {Nguyen Phuong and
                  Hoang Tuan},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Clustering in a Fixed Manifold to Detect Groups of Genes with Similar
                  Expression Patterns},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {32--42},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_3},
  doi          = {10.1007/978-3-540-70600-7\_3},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/PhuongT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PitkanenRRU08,
  author       = {Esa Pitk{\"{a}}nen and
                  Ari Rantanen and
                  Juho Rousu and
                  Esko Ukkonen},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A Computational Method for Reconstructing Gapless Metabolic Networks},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {288--302},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_22},
  doi          = {10.1007/978-3-540-70600-7\_22},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/PitkanenRRU08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PizzutiR08,
  author       = {Clara Pizzuti and
                  Simona E. Rombo},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Multi-functional Protein Clustering in {PPI} Networks},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {318--330},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_24},
  doi          = {10.1007/978-3-540-70600-7\_24},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/PizzutiR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PuscaT08,
  author       = {Stefan Pusca and
                  Theodora Toma},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Computational Model for the Study of the Fractal Parameters Characteristic
                  for the Surface of Titanium Dental Implants},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {571--580},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_47},
  doi          = {10.1007/978-3-540-70600-7\_47},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/PuscaT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/RoytbergGNLFSK08,
  author       = {Mikhail A. Roytberg and
                  Anna Gambin and
                  Laurent No{\'{e}} and
                  Slawomir Lasota and
                  Eugenia Furletova and
                  Ewa Szczurek and
                  Gregory Kucherov},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Efficient Seeding Techniques for Protein Similarity Search},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {466--478},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_36},
  doi          = {10.1007/978-3-540-70600-7\_36},
  timestamp    = {Wed, 06 Nov 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/RoytbergGNLFSK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SchwarzLBL08,
  author       = {Emanuel Schwarz and
                  F. Markus Leweke and
                  Sabine Bahn and
                  Pietro Li{\`{o}}},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Combining Molecular and Physiological Data of Complex Disorders},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {362--376},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_27},
  doi          = {10.1007/978-3-540-70600-7\_27},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/SchwarzLBL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SterianMN08,
  author       = {Paul E. Sterian and
                  Octavian Marin and
                  Valerica Ninulescu},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Control of the Lasers Dynamics by Pumping Modulation for Biophotonics
                  Applications},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {556--562},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_45},
  doi          = {10.1007/978-3-540-70600-7\_45},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/SterianMN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/TahriE08,
  author       = {Hatem Tahri and
                  Mourad Elloumi},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {A New Approximation Algorithm for the Minimum Fragment Removal Problem},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {427--435},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_32},
  doi          = {10.1007/978-3-540-70600-7\_32},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/TahriE08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/WassinkRVBN08,
  author       = {Ingo H. C. Wassink and
                  Han Rauwerda and
                  Paul E. van der Vet and
                  Timo M. Breit and
                  Anton Nijholt},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {E-BioFlow: Different Perspectives on Scientific Workflows},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {243--257},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_19},
  doi          = {10.1007/978-3-540-70600-7\_19},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/WassinkRVBN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/WathWCNFML08,
  author       = {Richard Carl Van der Wath and
                  Elizabeth van der Wath and
                  Antonio Carapelli and
                  Francesco Nardi and
                  Francesco Frati and
                  Luciano Milanesi and
                  Pietro Li{\`{o}}},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Bayesian Phylogeny on Grid},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {404--416},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_30},
  doi          = {10.1007/978-3-540-70600-7\_30},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/WathWCNFML08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/XiaDX08,
  author       = {Fei Xia and
                  Yong Dou and
                  Jiaqing Xu},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Families of FPGA-Based Accelerators for {BLAST} Algorithm with Multi-seeds
                  Detection and Parallel Extension},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {43--57},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_4},
  doi          = {10.1007/978-3-540-70600-7\_4},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/XiaDX08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ZantemaWB08,
  author       = {Hans Zantema and
                  Stefan Wagemans and
                  Dragan Bosnacki},
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Finding Frequent Subgraphs in Biological Networks Via Maximal Item
                  Sets},
  booktitle    = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  pages        = {303--317},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-70600-7\_23},
  doi          = {10.1007/978-3-540-70600-7\_23},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/ZantemaWB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bird/2008,
  editor       = {Mourad Elloumi and
                  Josef K{\"{u}}ng and
                  Michal Linial and
                  Robert F. Murphy and
                  Kristan Schneider and
                  Cristian Toma},
  title        = {Bioinformatics Research and Development, Second International Conference,
                  {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {13},
  publisher    = {Springer},
  year         = {2008},
  isbn         = {978-3-540-70598-7},
  timestamp    = {Thu, 11 Sep 2008 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/2008.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/BeigiZ07,
  author       = {Majid Beigi and
                  Andreas Zell},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Synthetic Protein Sequence Oversampling Method for Classification
                  and Remote Homology Detection in Imbalanced Protein Data},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {263--277},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_21},
  doi          = {10.1007/978-3-540-71233-6\_21},
  timestamp    = {Tue, 14 May 2019 10:00:53 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/BeigiZ07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CamousBS07,
  author       = {Fabrice Camous and
                  Stephen Blott and
                  Alan F. Smeaton},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Ontology-Based {MEDLINE} Document Classification},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {439--452},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_34},
  doi          = {10.1007/978-3-540-71233-6\_34},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/CamousBS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ChenM07,
  author       = {Xiang Chen and
                  Robert F. Murphy},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Interpretation of Protein Subcellular Location Patterns in 3D Images
                  Across Cell Types and Resolutions},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {328--342},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_26},
  doi          = {10.1007/978-3-540-71233-6\_26},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/ChenM07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DongLW07,
  author       = {Qiwen Dong and
                  Lei Lin and
                  Xiaolong Wang},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Protein Remote Homology Detection Based on Binary Profiles},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {212--223},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_17},
  doi          = {10.1007/978-3-540-71233-6\_17},
  timestamp    = {Wed, 28 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/DongLW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FariselliMCK07,
  author       = {Piero Fariselli and
                  Daniele Molinini and
                  Rita Casadio and
                  Anders Krogh},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Prediction of Structurally-Determined Coiled-Coil Domains with Hidden
                  Markov Models},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {292--302},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_23},
  doi          = {10.1007/978-3-540-71233-6\_23},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/FariselliMCK07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FritschI07,
  author       = {Arno Fritsch and
                  Katja Ickstadt},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Comparing Logic Regression Based Methods for Identifying {SNP} Interactions},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {90--103},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_8},
  doi          = {10.1007/978-3-540-71233-6\_8},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/FritschI07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/GinzingerGH07,
  author       = {Simon W. Ginzinger and
                  Thomas Gr{\"{a}}upl and
                  Volker Heun},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {SimShiftDB: Chemical-Shift-Based Homology Modeling},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {357--370},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_28},
  doi          = {10.1007/978-3-540-71233-6\_28},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/GinzingerGH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/GladilinGMDRE07,
  author       = {Evgeny Gladilin and
                  Sandra G{\"{o}}tze and
                  Jose Mateos{-}Langerak and
                  Roel van Driel and
                  Karl Rohr and
                  Roland Eils},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber
                  in Interphase Cell Nuclei},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {104--118},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_9},
  doi          = {10.1007/978-3-540-71233-6\_9},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/GladilinGMDRE07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HalachevST07,
  author       = {Mihail Halachev and
                  Nematollaah Shiri and
                  Anand Thamildurai},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Efficient and Scalable Indexing Techniques for Biological Sequence
                  Data},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {464--479},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_36},
  doi          = {10.1007/978-3-540-71233-6\_36},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/HalachevST07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HemertB07,
  author       = {Jano I. van Hemert and
                  Richard A. Baldock},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Mining Spatial Gene Expression Data for Association Rules},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {66--76},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_6},
  doi          = {10.1007/978-3-540-71233-6\_6},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/HemertB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HinneburgPW07,
  author       = {Alexander Hinneburg and
                  Andrea Porzel and
                  Karina Wolfram},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional
                  NMR-Spectra},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {424--438},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_33},
  doi          = {10.1007/978-3-540-71233-6\_33},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/HinneburgPW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/JainL07,
  author       = {Brijnesh J. Jain and
                  Michael Lappe},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Joining Softassign and Dynamic Programming for the Contact Map Overlap
                  Problem},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {410--423},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_32},
  doi          = {10.1007/978-3-540-71233-6\_32},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/JainL07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/JiangZG07,
  author       = {Da Jiang and
                  Shuigeng Zhou and
                  Jihong Guan},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {A Novel Method for Flux Distribution Computation in Metabolic Networks},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {154--167},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_13},
  doi          = {10.1007/978-3-540-71233-6\_13},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/JiangZG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/JonesM07,
  author       = {Susan Jones and
                  Yoichi Mukarami},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Patch Prediction of Protein Interaction Sites: Validation of a Scoring
                  Function for an Online Server},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {303--313},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_24},
  doi          = {10.1007/978-3-540-71233-6\_24},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/JonesM07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Kaderali07,
  author       = {Lars Kaderali},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Individualized Predictions of Survival Time Distributions from Gene
                  Expression Data Using a Bayesian {MCMC} Approach},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {77--89},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_7},
  doi          = {10.1007/978-3-540-71233-6\_7},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/Kaderali07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KumuthiniJB07,
  author       = {Judit Kumuthini and
                  Lionel Jouffe and
                  Conrad Bessant},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory
                  Networks from Temporal Microarray Data},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {28--37},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_3},
  doi          = {10.1007/978-3-540-71233-6\_3},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/KumuthiniJB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LeC07,
  author       = {Shu{-}Yun Le and
                  Jih{-}Hsiang Chen},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Statistical Inference on Distinct {RNA} Stem-Loops in Genomic Sequences},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {314--327},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_25},
  doi          = {10.1007/978-3-540-71233-6\_25},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/LeC07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LimaG07,
  author       = {Christelle Melo de Lima and
                  Christian Gautier},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {A Markovian Approach for the Segmentation of Chimpanzee Genome},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {251--262},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_20},
  doi          = {10.1007/978-3-540-71233-6\_20},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/LimaG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LindlofBCOO07,
  author       = {Angelica Lindl{\"{o}}f and
                  Marcus Br{\"{a}}utigam and
                  Aakash Chawade and
                  Bj{\"{o}}rn Olsson and
                  Olof Olsson},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Identification of Cold-Induced Genes in Cereal Crops and \emph{Arabidopsis}
                  Through Comparative Analysis of Multiple {EST} Sets},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {48--65},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_5},
  doi          = {10.1007/978-3-540-71233-6\_5},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/LindlofBCOO07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LuEMS07,
  author       = {James Lu and
                  Heinz W. Engl and
                  Rainer Machn{\'{e}} and
                  Peter Schuster},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Inverse Bifurcation Analysis of a Model for the Mammalian \emph{G}
                  \({}_{\mbox{1}}\)/ \emph{S} Regulatory Module},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {168--184},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_14},
  doi          = {10.1007/978-3-540-71233-6\_14},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/LuEMS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LubovacCGO07,
  author       = {Zelmina Lubovac and
                  David Corne and
                  Jonas Gamalielsson and
                  Bj{\"{o}}rn Olsson},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Weighted Cohesiveness for Identification of Functional Modules and
                  Their Interconnectivity},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {185--198},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_15},
  doi          = {10.1007/978-3-540-71233-6\_15},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/LubovacCGO07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MarraR07,
  author       = {Domenico Marra and
                  Paolo Romano},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Integrating Mutations Data of the {TP53} Human Gene in the Bioinformatics
                  Network Environment},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {453--463},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_35},
  doi          = {10.1007/978-3-540-71233-6\_35},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/MarraR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MeyerKB07,
  author       = {Patrick E. Meyer and
                  Kevin Kontos and
                  Gianluca Bontempi},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Biological Network Inference Using Redundancy Analysis},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {16--27},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_2},
  doi          = {10.1007/978-3-540-71233-6\_2},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/MeyerKB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Navajas-PerezRGAR07,
  author       = {Rafael Navajas{-}P{\'{e}}rez and
                  Manuel Ruiz Rej{\'{o}}n and
                  Manuel A. Garrido{-}Ramos and
                  Jos{\'{e}} Luis Aznarte and
                  Cristina Rubio{-}Escudero},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary
                  Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA
                  Sequences of \emph{Rumex } (Polygonaceae)},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {131--139},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_11},
  doi          = {10.1007/978-3-540-71233-6\_11},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/Navajas-PerezRGAR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/NimmanpipugLCPT07,
  author       = {Piyarat Nimmanpipug and
                  Vannajan Sanghiran Lee and
                  Jeerayut Chaijaruwanich and
                  Sukon Prasitwattanaseree and
                  Patrinee Traisathit},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Structural Screening of {HIV-1} Protease/Inhibitor Docking by Non-parametric
                  Binomial Distribution Test},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {119--130},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_10},
  doi          = {10.1007/978-3-540-71233-6\_10},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bird/NimmanpipugLCPT07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PizziRU07,
  author       = {Cinzia Pizzi and
                  Pasi Rastas and
                  Esko Ukkonen},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Fast Search Algorithms for Position Specific Scoring Matrices},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {239--250},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_19},
  doi          = {10.1007/978-3-540-71233-6\_19},
  timestamp    = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/PizziRU07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/RaddeK07,
  author       = {Nicole Radde and
                  Lars Kaderali},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Bayesian Inference of Gene Regulatory Networks Using Gene Expression
                  Time Series Data},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {1--15},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_1},
  doi          = {10.1007/978-3-540-71233-6\_1},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/RaddeK07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SaidiMN07,
  author       = {Rabie Saidi and
                  Mondher Maddouri and
                  Engelbert Mephu Nguifo},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Biological Sequences Encoding for Supervised Classification},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {224--238},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_18},
  doi          = {10.1007/978-3-540-71233-6\_18},
  timestamp    = {Wed, 25 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/SaidiMN07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SakakibaraAS07,
  author       = {Yasubumi Sakakibara and
                  Kiyoshi Asai and
                  Kengo Sato},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Stem Kernels for {RNA} Sequence Analyses},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {278--291},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_22},
  doi          = {10.1007/978-3-540-71233-6\_22},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/SakakibaraAS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Scholz07,
  author       = {Matthias Scholz},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Analysing Periodic Phenomena by Circular {PCA}},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {38--47},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_4},
  doi          = {10.1007/978-3-540-71233-6\_4},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/Scholz07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ShahS07,
  author       = {Jehan Zeb Shah and
                  Naomie Salim},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive
                  Chemical Compounds},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {140--153},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_12},
  doi          = {10.1007/978-3-540-71233-6\_12},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/ShahS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SteinhofelSA07,
  author       = {Kathleen Steinh{\"{o}}fel and
                  Alexandros Skaliotis and
                  Andreas Alexander Albrecht},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Stochastic Protein Folding Simulation in the d-Dimensional HP-Model},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {381--394},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_30},
  doi          = {10.1007/978-3-540-71233-6\_30},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/SteinhofelSA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SuHCOO07,
  author       = {Chung{-}Tsai Su and
                  Tong{-}Ming Hsu and
                  Chien{-}Yu Chen and
                  Yu{-}Yen Ou and
                  Yen{-}Jen Oyang},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Enhancing Protein Disorder Detection by Refined Secondary Structure
                  Prediction},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {395--409},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_31},
  doi          = {10.1007/978-3-540-71233-6\_31},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/SuHCOO07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/TautenhahnBN07,
  author       = {Ralf Tautenhahn and
                  Christoph B{\"{o}}ttcher and
                  Steffen Neumann},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Annotation of {LC/ESI-MS} Mass Signals},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {371--380},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_29},
  doi          = {10.1007/978-3-540-71233-6\_29},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/TautenhahnBN07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/TsiporkovaB07,
  author       = {Elena Tsiporkova and
                  Veselka Boeva},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Modelling and Simulation of the Genetic Phenomena of Additivity and
                  Dominance via Gene Networks of Parallel Aggregation Processes},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {199--211},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_16},
  doi          = {10.1007/978-3-540-71233-6\_16},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/TsiporkovaB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/YoonGKK07,
  author       = {Ji Won Yoon and
                  Simon J. Godsill and
                  ChulHun Kang and
                  Tae{-}Seong Kim},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Bayesian Inference for 2D Gel Electrophoresis Image Analysis},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {343--356},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_27},
  doi          = {10.1007/978-3-540-71233-6\_27},
  timestamp    = {Fri, 01 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/YoonGKK07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bird/2007,
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6},
  doi          = {10.1007/978-3-540-71233-6},
  isbn         = {978-3-540-71232-9},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/2007.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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