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@inproceedings{DBLP:conf/recomb/AlkanKNSZ05,
author = {Can Alkan and
Emre Karako{\c{c}} and
Joseph H. Nadeau and
S{\"{u}}leyman Cenk Sahinalp and
Kaizhong Zhang},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {{RNA-RNA} Interaction Prediction and Antisense {RNA} Target Search},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {152--171},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_12},
doi = {10.1007/11415770\_12},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AlkanKNSZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Altshuler05,
author = {David Altshuler},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Human Genome Sequence Variation and the Inherited Basis of Common
Disease},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {601--602},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_45},
doi = {10.1007/11415770\_45},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Altshuler05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BafnaB05,
author = {Vineet Bafna and
Vikas Bansal},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Improved Recombination Lower Bounds for Haplotype Data},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {569--584},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_43},
doi = {10.1007/11415770\_43},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BafnaB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BafnaTZ05,
author = {Vineet Bafna and
Haixu Tang and
Shaojie Zhang},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Consensus Folding of Unaligned {RNA} Sequences Revisited},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {172--187},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_13},
doi = {10.1007/11415770\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BafnaTZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Baumeister05,
author = {Wolfgang Baumeister},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Mapping Molecular Landscapes Inside Cells},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {281--282},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_21},
doi = {10.1007/11415770\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Baumeister05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BergeronMS05,
author = {Anne Bergeron and
Julia Mixtacki and
Jens Stoye},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {On Sorting by Translocations},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {615--629},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_47},
doi = {10.1007/11415770\_47},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BergeronMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BernCW05,
author = {Marshall W. Bern and
Jindong Chen and
Hao Chi Wong},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Avoiding Local Optima in Single Particle Reconstruction},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {118--132},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_10},
doi = {10.1007/11415770\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BernCW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BernG05,
author = {Marshall W. Bern and
David Goldberg},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral
Graph Partitioning},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {357--372},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_27},
doi = {10.1007/11415770\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BernG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BursteinUTC05,
author = {David Burstein and
Igor Ulitsky and
Tamir Tuller and
Benny Chor},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Information Theoretic Approaches to Whole Genome Phylogenies},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {283--295},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_22},
doi = {10.1007/11415770\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BursteinUTC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChiaB05,
author = {Nicholas Chia and
Ralf Bundschuh},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Practical Approach to Significance Assessment in Alignment with
Gaps},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {474--488},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_36},
doi = {10.1007/11415770\_36},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChiaB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChorT05,
author = {Benny Chor and
Tamir Tuller},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Maximum Likelihood of Evolutionary Trees Is Hard},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {296--310},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_23},
doi = {10.1007/11415770\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChorT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Collins05,
author = {James J. Collins},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Engineering Gene Regulatory Networks: {A} Reductionist Approach to
Systems Biology},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {505--505},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_38},
doi = {10.1007/11415770\_38},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Collins05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DeLisi05,
author = {Charles DeLisi},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Discovery and Annotation of Genetic Modules},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {188--188},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_14},
doi = {10.1007/11415770\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DeLisi05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DingFG05,
author = {Zhihong Ding and
Vladimir Filkov and
Dan Gusfield},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping {(PPH)}
Problem},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {585--600},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_44},
doi = {10.1007/11415770\_44},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DingFG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DurandHV05,
author = {Dannie Durand and
Bjarni V. Halld{\'{o}}rsson and
Benjamin Vernot},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {250--264},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_19},
doi = {10.1007/11415770\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DurandHV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FrankTP05,
author = {Ari Frank and
Stephen Tanner and
Pavel A. Pevzner},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {326--341},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_25},
doi = {10.1007/11415770\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FrankTP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FreyMRH05,
author = {Brendan J. Frey and
Quaid Morris and
Mark D. Robinson and
Timothy R. Hughes},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Finding Novel Transcripts in High-Resolution Genome-Wide Microarray
Data Using the GenRate Model},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {66--82},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_5},
doi = {10.1007/11415770\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FreyMRH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gat-ViksTRS05,
author = {Irit Gat{-}Viks and
Amos Tanay and
Daniela Raijman and
Ron Shamir},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {The Factor Graph Network Model for Biological Systems},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {31--47},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_3},
doi = {10.1007/11415770\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gat-ViksTRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GrossB05,
author = {Samuel S. Gross and
Michael R. Brent},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Using Multiple Alignments to Improve Gene Prediction},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {374--388},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_29},
doi = {10.1007/11415770\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GrossB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GusfieldB05,
author = {Dan Gusfield and
Vikas Bansal},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible
Characters},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {217--232},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_17},
doi = {10.1007/11415770\_17},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/GusfieldB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinH05,
author = {Eran Halperin and
Elad Hazan},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {{HAPLOFREQ} - Estimating Haplotype Frequencies E.ciently},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {553--568},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_42},
doi = {10.1007/11415770\_42},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalperinH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HusonKLS05,
author = {Daniel H. Huson and
Tobias H. Kl{\"{o}}pper and
Pete J. Lockhart and
Mike A. Steel},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Reconstruction of Reticulate Networks from Gene Trees},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {233--249},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_18},
doi = {10.1007/11415770\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HusonKLS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuynhJNS05,
author = {Trinh N. D. Huynh and
Jesper Jansson and
Nguyen Bao Nguyen and
Wing{-}Kin Sung},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Constructing a Smallest Refining Galled Phylogenetic Network},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {265--280},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_20},
doi = {10.1007/11415770\_20},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuynhJNS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JaimovichEMF05,
author = {Ariel Jaimovich and
Gal Elidan and
Hanah Margalit and
Nir Friedman},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Towards an Integrated Protein-Protein Interaction Network},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {14--30},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_2},
doi = {10.1007/11415770\_2},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/JaimovichEMF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaplanFM05,
author = {Tommy Kaplan and
Nir Friedman and
Hanah Margalit},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Predicting Transcription Factor Binding Sites Using Structural Knowledge},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {522--537},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_40},
doi = {10.1007/11415770\_40},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/KaplanFM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KingHSW05,
author = {Jonathan King and
Cammie Haase{-}Pettingell and
Ryan Simkovsky and
Peter Weigele},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Amino Acid Sequence Control of the Folding of the Parallel beta-Helix,
the Simplest beta-Sheet Fold},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {472--473},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_35},
doi = {10.1007/11415770\_35},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KingHSW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KoyuturkGS05,
author = {Mehmet Koyut{\"{u}}rk and
Ananth Grama and
Wojciech Szpankowski},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Pairwise Local Alignment of Protein Interaction Networks Guided by
Models of Evolution},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {48--65},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_4},
doi = {10.1007/11415770\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KoyuturkGS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lander05,
author = {Eric S. Lander},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Biology as Information},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {373--373},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_28},
doi = {10.1007/11415770\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lander05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LindquistFOGSCJ05,
author = {Susan Lindquist and
Ernest Fraenkel and
Tiago Outeiro and
Aaron Gitler and
Julie Su and
Anil Cashikar and
Smitha Jagadish},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Yeast Cells as a Discovery Platform for Neurodegenerative Disease},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {102--102},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_8},
doi = {10.1007/11415770\_8},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LindquistFOGSCJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LipsonABLY05,
author = {Doron Lipson and
Yonatan Aumann and
Amir Ben{-}Dor and
Nathan Linial and
Zohar Yakhini},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient Calculation of Interval Scores for {DNA} Copy Number Data
Analysis},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {83--100},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_6},
doi = {10.1007/11415770\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LipsonABLY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiuCWG05,
author = {Yan Liu and
Jaime G. Carbonell and
Peter Weigele and
Vanathi Gopalakrishnan},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Segmentation Conditional Random Fields (SCRFs): {A} New Approach for
Protein Fold Recognition},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {408--422},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_31},
doi = {10.1007/11415770\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiuCWG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MiddendorfKSFWL05,
author = {Manuel Middendorf and
Anshul Kundaje and
Mihir Shah and
Yoav Freund and
Chris Wiggins and
Christina S. Leslie},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Motif Discovery Through Predictive Modeling of Gene Regulation},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {538--552},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_41},
doi = {10.1007/11415770\_41},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MiddendorfKSFWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PapatsenkoL05,
author = {Dmitri A. Papatsenko and
Mike Levine},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Regulatory Network Controlling Drosophila Development},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {101--101},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_7},
doi = {10.1007/11415770\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PapatsenkoL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PrzytyckaDSD05,
author = {Teresa M. Przytycka and
George B. Davis and
Nan Song and
Dannie Durand},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Graph Theoretical Insights into Evolution of Multidomain Proteins},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {311--325},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_24},
doi = {10.1007/11415770\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PrzytyckaDSD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RasmussenSM05,
author = {Kim R. Rasmussen and
Jens Stoye and
Eugene W. Myers},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient q-Gram Filters for Finding All epsilon-Matches over a Given
Length},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {189--203},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_15},
doi = {10.1007/11415770\_15},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/RasmussenSM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffM05,
author = {David Sankoff and
Matthew Mazowita},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Stability of Rearrangement Measures in the Comparison of Genome Sequences},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {603--614},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_46},
doi = {10.1007/11415770\_46},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ScottIKS05,
author = {Jacob Scott and
Trey Ideker and
Richard M. Karp and
Roded Sharan},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction
Networks},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {1--13},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_1},
doi = {10.1007/11415770\_1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ScottIKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShatskySNW05,
author = {Maxim Shatsky and
Alexandra Shulman{-}Peleg and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Recognition of Binding Patterns Common to a Set of Protein Structures},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {440--455},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_33},
doi = {10.1007/11415770\_33},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShatskySNW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SonnenburgRS05,
author = {S{\"{o}}ren Sonnenburg and
Gunnar R{\"{a}}tsch and
Christin Sch{\"{a}}fer},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Learning Interpretable SVMs for Biological Sequence Classification},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {389--407},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_30},
doi = {10.1007/11415770\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SonnenburgRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SzeLY05,
author = {Sing{-}Hoi Sze and
Yue Lu and
Qingwu Yang},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Polynomial Time Solvable Formulation of Multiple Sequence Alignment},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {204--216},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_16},
doi = {10.1007/11415770\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SzeLY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ValouevLLSYZW05,
author = {Anton Valouev and
Lei Li and
Yu{-}Chi Liu and
David C. Schwartz and
Yi Yang and
Yu Zhang and
Michael S. Waterman},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Alignment of Optical Maps},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {489--504},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_37},
doi = {10.1007/11415770\_37},
timestamp = {Wed, 07 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ValouevLLSYZW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WanC05,
author = {Yunhu Wan and
Ting Chen},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Hidden Markov Model Based Scoring Function for Mass Spectrometry
Database Search},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {342--356},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_26},
doi = {10.1007/11415770\_26},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WanC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuCCCWHSH05,
author = {Kuen{-}Pin Wu and
Jia{-}Ming Chang and
Jun{-}Bo Chen and
Chi{-}Fon Chang and
Wen{-}Jin Wu and
Tai{-}Huang Huang and
Ting{-}Yi Sung and
Wen{-}Lian Hsu},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {RIBRA-An Error-Tolerant Algorithm for the {NMR} Backbone Assignment
Problem},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {103--117},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_9},
doi = {10.1007/11415770\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuCCCWHSH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Xu05,
author = {Jinbo Xu},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Rapid Protein Side-Chain Packing via Tree Decomposition},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {423--439},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_32},
doi = {10.1007/11415770\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Xu05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YanoverH05,
author = {Chen Yanover and
Tomer Hertz},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide
Distance Functions},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {456--471},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_34},
doi = {10.1007/11415770\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YanoverH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeangJ05,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Modeling the Combinatorial Functions of Multiple Transcription Factors},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {506--521},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_39},
doi = {10.1007/11415770\_39},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeangJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZilbersteinZPY05,
author = {Chaya Ben{-}Zaken Zilberstein and
Michal Ziv{-}Ukelson and
Ron Y. Pinter and
Zohar Yakhini},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A High-Throughput Approach for Associating microRNAs with Their Activity
Conditions},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {133--151},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_11},
doi = {10.1007/11415770\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZilbersteinZPY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2005,
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/b135594},
doi = {10.1007/B135594},
isbn = {3-540-25866-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2005.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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