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@article{DBLP:journals/bmcbi/0002BFE11,
author = {Wen{-}Chieh Chang and
J. Gordon Burleigh and
David Fern{\'{a}}ndez{-}Baca and
Oliver Eulenstein},
title = {An {ILP} solution for the gene duplication problem},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S14},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S14},
doi = {10.1186/1471-2105-12-S1-S14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/0002BFE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbediYS11,
author = {Vida Abedi and
Mohammed Yeasin and
Thomas R. Sutter},
title = {Integration of bioinformatics tools in candidate gene prioritization
of co-regulated gene sets in Saccharomyces cerevisiae},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A18},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A18},
doi = {10.1186/1471-2105-12-S7-A18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbediYS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AchuthanCGRV11,
author = {Srisairam Achuthan and
Bong Jae Chung and
Preetam Ghosh and
Vijayaraghavan Rangachari and
Ashwin Vaidya},
title = {A modified Stokes-Einstein equation for A{\(\beta\)} aggregation},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S13},
doi = {10.1186/1471-2105-12-S10-S13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AchuthanCGRV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AgarwalLY11,
author = {Shashank Agarwal and
Feifan Liu and
Hong Yu},
title = {Simple and efficient machine learning frameworks for identifying protein-protein
interaction relevant articles and experimental methods used to study
the interactions},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S10},
doi = {10.1186/1471-2105-12-S8-S10},
timestamp = {Fri, 20 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AgarwalLY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArevalilloN11,
author = {Jorge M. Arevalillo and
Hilario Navarro},
title = {A new method for identifying bivariate differential expression in
high dimensional microarray data using quadratic discriminant analysis},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S6},
doi = {10.1186/1471-2105-12-S12-S6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArevalilloN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArighiLKCWVHW11,
author = {Cecilia N. Arighi and
Zhiyong Lu and
Martin Krallinger and
Kevin Bretonnel Cohen and
W. John Wilbur and
Alfonso Valencia and
Lynette Hirschman and
Cathy H. Wu},
title = {Overview of the BioCreative {III} Workshop},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S1},
doi = {10.1186/1471-2105-12-S8-S1},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArighiLKCWVHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArighiRABCCCGGHHKLLLLMOPRSSSTTHW11,
author = {Cecilia N. Arighi and
Phoebe M. Roberts and
Shashank Agarwal and
Sanmitra Bhattacharya and
Gianni Cesareni and
Andrew Chatr{-}aryamontri and
Simon Clematide and
Pascale Gaudet and
Michelle G. Giglio and
Ian Harrow and
Eva Huala and
Martin Krallinger and
Ulf Leser and
Donghui Li and
Feifan Liu and
Zhiyong Lu and
Lois J. Maltais and
Naoaki Okazaki and
Livia Perfetto and
Fabio Rinaldi and
Rune S{\ae}tre and
David Salgado and
Padmini Srinivasan and
Philippe E. Thomas and
Luca Toldo and
Lynette Hirschman and
Cathy H. Wu},
title = {BioCreative {III} interactive task: an overview},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S4},
doi = {10.1186/1471-2105-12-S8-S4},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArighiRABCCCGGHHKLLLLMOPRSSSTTHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArinoCK11,
author = {Arturo H. Ari{\~{n}}o and
Vishwas Chavan and
Nick King},
title = {The Biodiversity Informatics Potential Index},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-15}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S15-S4},
doi = {10.1186/1471-2105-12-S15-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArinoCK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AstrovskayaTMWMBZ11,
author = {Irina Astrovskaya and
Bassam Tork and
Serghei Mangul and
Kelly Westbrooks and
Ion I. Mandoiu and
Peter Balfe and
Alex Zelikovsky},
title = {Inferring viral quasispecies spectra from 454 pyrosequencing reads},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-6}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S6-S1},
doi = {10.1186/1471-2105-12-S6-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AstrovskayaTMWMBZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AttieDY11,
author = {Oliver Attie and
Aaron E. Darling and
Sophia Yancopoulos},
title = {The rise and fall of breakpoint reuse depending on genome resolution},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S1},
doi = {10.1186/1471-2105-12-S9-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AttieDY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AzizDBE11,
author = {Ramy K. Aziz and
Bhakti Dwivedi and
Mya Breitbart and
Robert A. Edwards},
title = {Phage Eco-Locator: a web tool for visualization and analysis of phage
genomes in metagenomic data sets},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A9},
doi = {10.1186/1471-2105-12-S7-A9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AzizDBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AzizSR11,
author = {Ramy K. Aziz and
Rama Saad and
Mariam R. Rizkallah},
title = {PharmacoMicrobiomics or how bugs modulate drugs: an educational initiative
to explore the effects of human microbiome on drugs},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A10},
doi = {10.1186/1471-2105-12-S7-A10},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AzizSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BadescuBDM11,
author = {Dunarel Badescu and
Alix Boc and
Abdoulaye Banir{\'{e}} Diallo and
Vladimir Makarenkov},
title = {Detecting genomic regions associated with a disease using variability
functions and Adjusted Rand Index},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S9},
doi = {10.1186/1471-2105-12-S9-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BadescuBDM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarrettW11,
author = {Neil Barrett and
Jens H. Weber{-}Jahnke},
title = {Building a biomedical tokenizer using the token lattice design pattern
and the adapted Viterbi algorithm},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S1},
doi = {10.1186/1471-2105-12-S3-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BarrettW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BelcaidBP11,
author = {Mahdi Belcaid and
Anne Bergeron and
Guylaine Poisson},
title = {The evolution of the tape measure protein: units, duplications and
losses},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S10},
doi = {10.1186/1471-2105-12-S9-S10},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BelcaidBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BensoCPSH11,
author = {Alfredo Benso and
Stefano Di Carlo and
Gianfranco Politano and
Alessandro Savino and
Hafeez Hafeezurrehman},
title = {Building gene expression profile classifiers with a simple and efficient
rejection option in {R}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S3},
doi = {10.1186/1471-2105-12-S13-S3},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BensoCPSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BentonHUCLFH11,
author = {Adrian Benton and
Shawndra Hill and
Lyle H. Ungar and
Annie Chung and
Charles E. Leonard and
Cristin Freeman and
John H. Holmes},
title = {A system for de-identifying medical message board text},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S2},
doi = {10.1186/1471-2105-12-S3-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BentonHUCLFH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BerntM11,
author = {Matthias Bernt and
Martin Middendorf},
title = {A method for computing an inventory of metazoan mitochondrial gene
order rearrangements},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S6},
doi = {10.1186/1471-2105-12-S9-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BerntM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BhattacharyaD11,
author = {Anindya Bhattacharya and
Rajat K. De},
title = {A novel noise handling method to improve clustering of gene expression
patterns},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A3},
doi = {10.1186/1471-2105-12-S7-A3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BhattacharyaD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BhuyanG11,
author = {Md Shariful Bhuyan and
Xin Gao},
title = {A protein-dependent side-chain rotamer library},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S10},
doi = {10.1186/1471-2105-12-S14-S10},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BhuyanG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BirinT11,
author = {Hadas Birin and
Tamir Tuller},
title = {Efficient algorithms for reconstructing gene content by co-evolution},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S12},
doi = {10.1186/1471-2105-12-S9-S12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BirinT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BisginLFXT11,
author = {Halil Bisgin and
Zhichao Liu and
Hong Fang and
Xiaowei Xu and
Weida Tong},
title = {Mining {FDA} drug labels using an unsupervised learning technique
- topic modeling},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S11},
doi = {10.1186/1471-2105-12-S10-S11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BisginLFXT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoucherM11,
author = {Christina Boucher and
Bin Ma},
title = {Closest string with outliers},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S55},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S55},
doi = {10.1186/1471-2105-12-S1-S55},
timestamp = {Wed, 15 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoucherM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BovolentaAL11,
author = {Luiz A. Bovolenta and
Marcio Luis Acencio and
Ney Lemke},
title = {The development of an open-access database for human transcriptional
regulation interactions},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A10},
doi = {10.1186/1471-2105-12-S11-A10},
timestamp = {Mon, 14 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BovolentaAL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BragaMRS11,
author = {Mar{\'{\i}}lia D. V. Braga and
Raphael Machado and
Leonardo Costa Ribeiro and
Jens Stoye},
title = {Genomic distance under gene substitutions},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S8},
doi = {10.1186/1471-2105-12-S9-S8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BragaMRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BragaMRS11a,
author = {Mar{\'{\i}}lia D. V. Braga and
Raphael Machado and
Leonardo Costa Ribeiro and
Jens Stoye},
title = {On the weight of indels in genomic distances},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S13},
doi = {10.1186/1471-2105-12-S9-S13},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BragaMRS11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuskeDFLFMWPB11,
author = {Orion J. Buske and
Misko Dzamba and
Justin Foong and
Lynette Lau and
Marc Fiume and
Christian Marshall and
Susan Walker and
Aparna Prasad and
Michael Brudno},
title = {Variant detection and the Autism sequencing project},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A4},
doi = {10.1186/1471-2105-12-S11-A4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BuskeDFLFMWPB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CapriottiA11,
author = {Emidio Capriotti and
Russ B. Altman},
title = {Improving the prediction of disease-related variants using protein
three-dimensional structure},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S3},
doi = {10.1186/1471-2105-12-S4-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CapriottiA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangLA11,
author = {Che{-}Wei Chang and
Ping{-}Chiang Lyu and
Masanori Arita},
title = {Reconstructing phylogeny from metabolic substrate-product relationships},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S27},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S27},
doi = {10.1186/1471-2105-12-S1-S27},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangLA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Chatr-aryamontriWPBLICCT11,
author = {Andrew Chatr{-}aryamontri and
Andrew G. Winter and
Livia Perfetto and
Leonardo Briganti and
Luana Licata and
Marta Iannuccelli and
Luisa Castagnoli and
Gianni Cesareni and
Mike Tyers},
title = {Benchmarking of the 2010 BioCreative Challenge {III} text-mining competition
by the BioGRID and {MINT} interaction databases},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S8},
doi = {10.1186/1471-2105-12-S8-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Chatr-aryamontriWPBLICCT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChavanP11,
author = {Vishwas Chavan and
Lyubomir Penev},
title = {The data paper: a mechanism to incentivize data publishing in biodiversity
science},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-15}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S15-S2},
doi = {10.1186/1471-2105-12-S15-S2},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChavanP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenC11,
author = {Yi{-}Ping Chen and
Kwang{-}Hyun Cho},
title = {The Ninth Asia Pacific Bioinformatics Conference {(APBC2011)}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {I1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-I1},
doi = {10.1186/1471-2105-12-S1-I1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenCFJH11,
author = {Cho{-}Yi Chen and
Shui{-}Tein Chen and
Chiou{-}Shann Fuh and
Hsueh{-}Fen Juan and
Hsuan{-}Cheng Huang},
title = {Coregulation of transcription factors and microRNAs in human transcriptional
regulatory network},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S41},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S41},
doi = {10.1186/1471-2105-12-S1-S41},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenCFJH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenLPC11,
author = {Chun{-}Hsi Chen and
Hsuan{-}Yu Lin and
Chia{-}Lin Pan and
Feng{-}Chi Chen},
title = {The genomic features that affect the lengths of 5' untranslated regions
in multicellular eukaryotes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S3},
doi = {10.1186/1471-2105-12-S9-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenLPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenMLX11,
author = {Yong Chen and
Fenglou Mao and
Guojun Li and
Ying Xu},
title = {Genome-wide discovery of missing genes in biological pathways of prokaryotes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S1},
doi = {10.1186/1471-2105-12-S1-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenMLX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenSKPFT11,
author = {Minjun Chen and
Leming M. Shi and
Reagan Kelly and
Roger Perkins and
Hong Fang and
Weida Tong},
title = {Selecting a single model or combining multiple models for microarray-based
classifier development? - {A} comparative analysis based on large
and diverse datasets generated from the {MAQC-II} project},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S3},
doi = {10.1186/1471-2105-12-S10-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenSKPFT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenSY11,
author = {Xin Chen and
Ruimin Sun and
Jiadong Yu},
title = {Approximating the double-cut-and-join distance between unsigned genomes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S17},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S17},
doi = {10.1186/1471-2105-12-S9-S17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenSY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChikalovYML11,
author = {Igor Chikalov and
Peggy Yao and
Mikhail Moshkov and
Jean{-}Claude Latombe},
title = {Learning probabilistic models of hydrogen bond stability from molecular
dynamics simulation trajectories},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S34},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S34},
doi = {10.1186/1471-2105-12-S1-S34},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChikalovYML11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChoiH11,
author = {Sungwook Choi and
Kyungsook Han},
title = {Prediction of RNA-binding amino acids from protein and {RNA} sequences},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S7},
doi = {10.1186/1471-2105-12-S13-S7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChoiH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChoiNW11,
author = {Sy Bing Choi and
Yahaya M. Normi and
Habibah A. Wahab},
title = {Revealing the functionality of hypothetical protein {KPN00728} from
Klebsiella pneumoniae {MGH78578:} molecular dynamics simulation approaches},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S11},
doi = {10.1186/1471-2105-12-S13-S11},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChoiNW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CollinsMH11,
author = {Roy Eric Collins and
Hugh Merz and
Paul G. Higgs},
title = {Origin and evolution of gene families in Bacteria and Archaea},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S14},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S14},
doi = {10.1186/1471-2105-12-S9-S14},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CollinsMH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CostaRRC11,
author = {Ivan G. Costa and
Helge G. Roider and
Tha{\'{\i}}s Gaudencio do R{\^{e}}go and
Francisco de A. T. de Carvalho},
title = {Predicting gene expression in {T} cell differentiation from histone
modifications and transcription factor binding affinities by linear
mixture models},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S29},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S29},
doi = {10.1186/1471-2105-12-S1-S29},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CostaRRC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaiLGCZ11,
author = {Tianli Dai and
Qi Liu and
Jun Gao and
Zhiwei Cao and
Ruixin Zhu},
title = {A new protein-ligand binding sites prediction method based on the
integration of protein sequence conservation information},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S9},
doi = {10.1186/1471-2105-12-S14-S9},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DaiLGCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeLucaKZRB11,
author = {David S. DeLuca and
Derin B. Keskin and
Guang Zhang and
Ellis L. Reinherz and
Vladimir Brusic},
title = {{PB1-F2} Finder: scanning influenza sequences for {PB1-F2} encoding
{RNA} segments},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S6},
doi = {10.1186/1471-2105-12-S13-S6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DeLucaKZRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DentIRRPM11,
author = {Leon Dent and
Nahed Ismail and
Steven Robinson and
Gary L. Rogers and
Siddharth Pratap and
Dana Marshall},
title = {Next-gen sequencing of multi-drug resistant Acinetobacter baumanii
at Nashville General Hospital at Meharry},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A14},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A14},
doi = {10.1186/1471-2105-12-S7-A14},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DentIRRPM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeshwarQM11,
author = {Amit G. Deshwar and
Gerald T. Quon and
Quaid Morris},
title = {Computational purification of tumor gene expression data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A9},
doi = {10.1186/1471-2105-12-S11-A9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DeshwarQM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiedrichRSKCP11,
author = {Karl T. Diedrich and
John A. Roberts and
Richard H. Schmidt and
Chang{-}Ki Kang and
Zang{-}Hee Cho and
Dennis L. Parker},
title = {Validation of an arterial tortuosity measure with application to hypertension
collection of clinical hypertensive patients},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S15},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S15},
doi = {10.1186/1471-2105-12-S10-S15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DiedrichRSKCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoganNL11,
author = {Rezarta Islamaj Dogan and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Zhiyong Lu},
title = {A context-blocks model for identifying clinical relationships in patient
records},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S3},
doi = {10.1186/1471-2105-12-S3-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DoganNL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoganY11,
author = {Rezarta Islamaj Dogan and
Lana Yeganova},
title = {Topics in machine learning for biomedical literature analysis and
text retrieval},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {I1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-I1},
doi = {10.1186/1471-2105-12-S3-I1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DoganY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DozmorovGW11,
author = {Mikhail G. Dozmorov and
Cory B. Giles and
Jonathan D. Wren},
title = {Predicting gene ontology from a global meta-analysis of 1-color microarray
experiments},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S14},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S14},
doi = {10.1186/1471-2105-12-S10-S14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DozmorovGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DozmorovW11,
author = {Mikhail G. Dozmorov and
Jonathan D. Wren},
title = {High-throughput processing and normalization of one-color microarrays
for transcriptional meta-analyses},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S2},
doi = {10.1186/1471-2105-12-S10-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DozmorovW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuPW11,
author = {Tie Du and
Wee Puah and
Martin Wasser},
title = {Cell cycle phase classification in 3D in vivo microscopy of Drosophila
embryogenesis},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S18},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S18},
doi = {10.1186/1471-2105-12-S13-S18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DuPW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuitamaKDHWM11,
author = {Jorge Duitama and
Justin Kennedy and
Sanjiv Dinakar and
Y{\"{o}}zen Hern{\'{a}}ndez and
Yufeng Wu and
Ion I. Mandoiu},
title = {Linkage disequilibrium based genotype calling from low-coverage shotgun
sequencing reads},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S53},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S53},
doi = {10.1186/1471-2105-12-S1-S53},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DuitamaKDHWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EsfahaniYD11,
author = {Mohammad Shahrokh Esfahani and
Byung{-}Jun Yoon and
Edward R. Dougherty},
title = {Probabilistic reconstruction of the tumor progression process in gene
regulatory networks in the presence of uncertainty},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S9},
doi = {10.1186/1471-2105-12-S10-S9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EsfahaniYD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FaberGMRH11,
author = {Kirsten Faber and
Karl{-}Heinz Glatting and
Phillip J. Mueller and
Angela Risch and
Agnes Hotz{-}Wagenblatt},
title = {Genome-wide prediction of splice-modifying SNPs in human genes using
a new analysis pipeline called AASsites},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S2},
doi = {10.1186/1471-2105-12-S4-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FaberGMRH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FernandezKSSMA11,
author = {Michael Fern{\'{a}}ndez and
Yutaro Kumagai and
Daron M. Standley and
Akinori Sarai and
Kenji Mizuguchi and
Shandar Ahmad},
title = {Prediction of dinucleotide-specific RNA-binding sites in proteins},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S5},
doi = {10.1186/1471-2105-12-S13-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FernandezKSSMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlightPHR11,
author = {Robert M. Flight and
Jeffrey C. Petruska and
Benjamin J. Harrison and
Eric C. Rouchka},
title = {categoryCompare: high-throughput data meta-analysis using gene annotations},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A16},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A16},
doi = {10.1186/1471-2105-12-S7-A16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FlightPHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrancescattoPRVSTDCH11,
author = {Margherita Francescatto and
Luba Pardo and
Patrizia Rizzu and
Morana Vitezic and
Javier Sim{\'{o}}n{-}S{\'{a}}nchez and
Hazuki Takahashi and
Carsten O. Daub and
Piero Carninci and
Peter Heutink},
title = {Profiling transcription initiation in human aged brain using deep-CAGE},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A8},
doi = {10.1186/1471-2105-12-S11-A8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FrancescattoPRVSTDCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FukagawaTTTA11,
author = {Daiji Fukagawa and
Takeyuki Tamura and
Atsuhiro Takasu and
Etsuji Tomita and
Tatsuya Akutsu},
title = {A clique-based method for the edit distance between unordered trees
and its application to analysis of glycan structures},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S13},
doi = {10.1186/1471-2105-12-S1-S13},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FukagawaTTTA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GhaffariIQD11,
author = {Noushin Ghaffari and
Ivan Ivanov and
Xiaoning Qian and
Edward R. Dougherty},
title = {A CoD-based stationary control policy for intervening in large gene
regulatory networks},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S10},
doi = {10.1186/1471-2105-12-S10-S10},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GhaffariIQD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GhoshMRCM11,
author = {Tarini Shankar Ghosh and
Monzoorul Haque Mohammed and
Hannah Rajasingh and
Sudha Chadaram and
Sharmila S. Mande},
title = {HabiSign: a novel approach for comparison of metagenomes and rapid
identification of habitat-specific sequences},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S9},
doi = {10.1186/1471-2105-12-S13-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GhoshMRCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GoddardWCY11,
author = {Anthony Goddard and
Nathan Wilson and
Phil Cryer and
Grant Yamashita},
title = {Data hosting infrastructure for primary biodiversity data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-15}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S15-S5},
doi = {10.1186/1471-2105-12-S15-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GoddardWCY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GoreckiBE11,
author = {Pawel G{\'{o}}recki and
J. Gordon Burleigh and
Oliver Eulenstein},
title = {Maximum likelihood models and algorithms for gene tree evolution with
duplications and losses},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S15},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S15},
doi = {10.1186/1471-2105-12-S1-S15},
timestamp = {Fri, 17 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GoreckiBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GoudeyWRZKMMASIHK11,
author = {Benjamin Goudey and
Qiao Wang and
Dave Rawlinson and
Armita Zarnegar and
Eder Kikianty and
John Markham and
Geoff MacIntyre and
Gad Abraham and
Linda Stern and
Michael Inouye and
Izhak Haviv and
Adam Kowalczyk},
title = {Replication of epistatic {DNA} loci in two case-control {GWAS} studies
using {OPE} algorithm},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A5},
doi = {10.1186/1471-2105-12-S11-A5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GoudeyWRZKMMASIHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GriffithQBC11,
author = {Shelton D. Griffith and
Daniel Quest and
Thomas S. Brettin and
Robert W. Cottingham},
title = {Scenario driven data modelling: a method for integrating diverse sources
of data and data streams},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S17},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S17},
doi = {10.1186/1471-2105-12-S10-S17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GriffithQBC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GroverASBS11,
author = {Abhinav Grover and
Vibhuti Agrawal and
Ashutosh Shandilya and
Virendra S. Bisaria and
Durai Sundar},
title = {Non-nucleosidic inhibition of Herpes simplex virus {DNA} polymerase:
mechanistic insights into the anti-herpetic mode of action of herbal
drug withaferin {A}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S22},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S22},
doi = {10.1186/1471-2105-12-S13-S22},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GroverASBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GroverSAPBBS11,
author = {Abhinav Grover and
Ashutosh Shandilya and
Vibhuti Agrawal and
Piyush Pratik and
Divya Bhasme and
Virendra S. Bisaria and
Durai Sundar},
title = {Hsp90/Cdc37 Chaperone/co-chaperone complex, a novel junction anticancer
target elucidated by the mode of action of herbal drug Withaferin
{A}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S30},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S30},
doi = {10.1186/1471-2105-12-S1-S30},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GroverSAPBBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrynbergALMR11,
author = {Priscila Grynberg and
Thomas Abeel and
Pedro Lopes and
Geoff MacIntyre and
Lorena Pantano Rubi{\~{n}}o},
title = {Highlights from the Student Council Symposium 2011 at the International
Conference on Intelligent Systems for Molecular Biology and European
Conference on Computational Biology},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A1},
doi = {10.1186/1471-2105-12-S11-A1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrynbergALMR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuneyO11,
author = {Emre Guney and
Baldo Oliva},
title = {Toward {PWAS:} discovering pathways associated with human disorders},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A12},
doi = {10.1186/1471-2105-12-S11-A12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuneyO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuptaRK11,
author = {Rohit Gupta and
Navneet Rao and
Vipin Kumar},
title = {Discovery of error-tolerant biclusters from noisy gene expression
data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S1},
doi = {10.1186/1471-2105-12-S12-S1},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuptaRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HanCT11,
author = {Bing Han and
Xue{-}wen Chen and
Zohreh Talebizadeh},
title = {{FEPI-MB:} identifying SNPs-disease association using a Markov Blanket-based
approach},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S3},
doi = {10.1186/1471-2105-12-S12-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HanCT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HanL11,
author = {Henry Han and
Xiaoli Li},
title = {Multi-resolution independent component analysis for high-performance
tumor classification and biomarker discovery},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S7},
doi = {10.1186/1471-2105-12-S1-S7},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HanL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HarrisJRRUHBH11,
author = {Jason B. Harris and
David D. Jenkins and
Jonathan Reyles and
Stephanie Rickett and
Jordan M. Utley and
Elizabeth E. Howell and
J{\'{e}}r{\^{o}}me Baudry and
Robert J. Hinde},
title = {Determining anion-quadrupole interactions among protein, DNA, and
ligand molecules},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A5},
doi = {10.1186/1471-2105-12-S7-A5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HarrisJRRUHBH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeYGLY11,
author = {Zengyou He and
Can Yang and
Guangyu Guo and
Ning Li and
Weichuan Yu},
title = {Motif-All: discovering all phosphorylation motifs},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S22},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S22},
doi = {10.1186/1471-2105-12-S1-S22},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeYGLY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeZPEH11,
author = {Dan He and
Noah Zaitlen and
Bogdan Pasaniuc and
Eleazar Eskin and
Eran Halperin},
title = {Genotyping common and rare variation using overlapping pool sequencing},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-6}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S6-S2},
doi = {10.1186/1471-2105-12-S6-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeZPEH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeZY11,
author = {Zengyou He and
Hongyu Zhao and
Weichuan Yu},
title = {Score regularization for peptide identification},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S2},
doi = {10.1186/1471-2105-12-S1-S2},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HeZY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsuCLY11,
author = {Kai{-}Cheng Hsu and
Yen{-}Fu Chen and
Shen{-}Rong Lin and
Jinn{-}Moon Yang},
title = {iGEMDOCK: a graphical environment of enhancing {GEMDOCK} using pharmacological
interactions and post-screening analysis},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S33},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S33},
doi = {10.1186/1471-2105-12-S1-S33},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HsuCLY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsuWCKC11,
author = {Chien{-}Hsiang Hsu and
Tse{-}Yi Wang and
Hsueh{-}Ting Chu and
Cheng{-}Yan Kao and
Kuang{-}Chi Chen},
title = {A quantitative analysis of monochromaticity in genetic interaction
networks},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S16},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S16},
doi = {10.1186/1471-2105-12-S13-S16},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HsuWCKC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuHM11,
author = {Qinmin Hu and
Jimmy X. Huang and
Jun Miao},
title = {A robust approach to optimizing multi-source information for enhancing
genomics retrieval performance},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S6},
doi = {10.1186/1471-2105-12-S5-S6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuHM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangLLTHHHH11,
author = {Hui{-}Ling Huang and
I{-}Che Lin and
Yi{-}Fan Liou and
Chia{-}Ta Tsai and
Kai{-}Ti Hsu and
Wen{-}Lin Huang and
Shinn{-}Jang Ho and
Shinn{-}Ying Ho},
title = {Predicting and analyzing DNA-binding domains using a systematic approach
to identifying a set of informative physicochemical and biochemical
properties},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S47},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S47},
doi = {10.1186/1471-2105-12-S1-S47},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangLLTHHHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangY11,
author = {Jhang{-}Wei Huang and
Jinn{-}Moon Yang},
title = {Changed epitopes drive the antigenic drift for influenza {A} {(H3N2)}
viruses},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S31},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S31},
doi = {10.1186/1471-2105-12-S1-S31},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IngwersenC11,
author = {Peter Ingwersen and
Vishwas Chavan},
title = {Indicators for the Data Usage Index {(DUI):} an incentive for publishing
primary biodiversity data through global information infrastructure},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-15}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S15-S3},
doi = {10.1186/1471-2105-12-S15-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IngwersenC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IslamIG11,
author = {Atiq Islam and
Khan M. Iftekharuddin and
E. Olusegun George},
title = {Gene expression based prototype for automatic tumor prediction},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A15},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A15},
doi = {10.1186/1471-2105-12-S7-A15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IslamIG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IzarzugazaHBOMV11,
author = {Jos{\'{e}} M. G. Izarzugaza and
Lisa E. M. Hopcroft and
Anja Baresic and
Christine A. Orengo and
Andrew C. R. Martin and
Alfonso Valencia},
title = {Characterization of pathogenic germline mutations in human Protein
Kinases},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S1},
doi = {10.1186/1471-2105-12-S4-S1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IzarzugazaHBOMV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JeongNUM11,
author = {Euna Jeong and
Masao Nagasaki and
Kazuko Ueno and
Satoru Miyano},
title = {Ontology-based instance data validation for high-quality curated biological
pathways},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S8},
doi = {10.1186/1471-2105-12-S1-S8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JeongNUM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Jimeno-YepesMA11a,
author = {Antonio Jimeno{-}Yepes and
Bridget T. McInnes and
Alan R. Aronson},
title = {Collocation analysis for {UMLS} knowledge-based word sense disambiguation},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S4},
doi = {10.1186/1471-2105-12-S3-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesMA11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JohnTAHKL11,
author = {Shalini John and
Sundarapandian Thangapandian and
Mahreen Arooj and
Jong Hong and
Kwang Kim and
Keun Woo Lee},
title = {Development, evaluation and application of 3D {QSAR} Pharmacophore
model in the discovery of potential human renin inhibitors},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S4},
doi = {10.1186/1471-2105-12-S14-S4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JohnTAHKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JohnTSL11,
author = {Shalini John and
Sundarapandian Thangapandian and
Sugunadevi Sakkiah and
Keun Woo Lee},
title = {Potent bace-1 inhibitor design using pharmacophore modeling, in silico
screening and molecular docking studies},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S28},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S28},
doi = {10.1186/1471-2105-12-S1-S28},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JohnTSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangCTCTPW11,
author = {Chu Kang and
Yung{-}Jen Chuang and
Kai Che Tung and
Chun Chao and
Chuan Yi Tang and
Shih Chi Peng and
David Shan{-}Hill Wong},
title = {A genetic algorithm-based boolean delay model of intracellular signal
transduction in inflammation},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S17},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S17},
doi = {10.1186/1471-2105-12-S1-S17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KangCTCTPW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangY11,
author = {Chiyong Kang and
Gwan{-}Su Yi},
title = {Identification of ubiquitin/ubiquitin-like protein modification from
tandem mass spectra with various PTMs},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S8},
doi = {10.1186/1471-2105-12-S14-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KangY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KatoN11,
author = {Tsuyoshi Kato and
Nozomi Nagano},
title = {Discriminative structural approaches for enzyme active-site prediction},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S49},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S49},
doi = {10.1186/1471-2105-12-S1-S49},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KatoN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KehrWR11,
author = {Birte Kehr and
David Weese and
Knut Reinert},
title = {{STELLAR:} fast and exact local alignments},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S15},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S15},
doi = {10.1186/1471-2105-12-S9-S15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KehrWR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhannaR11,
author = {Varun Khanna and
Shoba Ranganathan},
title = {In silico approach to screen compounds active against parasitic nematodes
of major socio-economic importance},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S25},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S25},
doi = {10.1186/1471-2105-12-S13-S25},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KhannaR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimMCY11,
author = {Su Kim and
David Mart{\'{\i}}nez and
Lawrence Cavedon and
Lars Yencken},
title = {Automatic classification of sentences to support Evidence Based Medicine},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-2}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S2-S5},
doi = {10.1186/1471-2105-12-S2-S5},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimMCY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimSJK11,
author = {Mi Kim and
Hwa Jeong Seo and
Je{-}Gun Joung and
Ju Kim},
title = {Comprehensive evaluation of matrix factorization methods for the analysis
of {DNA} microarray gene expression data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S8},
doi = {10.1186/1471-2105-12-S13-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimSJK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimW11,
author = {Sun Kim and
W. John Wilbur},
title = {Classifying protein-protein interaction articles using word and syntactic
features},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S9},
doi = {10.1186/1471-2105-12-S8-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KirtleyRFSEK11,
author = {John Kirtley and
Eric C. Rouchka and
Robert M. Flight and
Palaniappan Sethu and
John W. Eaton and
Robert S. Keynton},
title = {Meta-analysis of gene expression changes in response to radiation
exposure},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A20},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A20},
doi = {10.1186/1471-2105-12-S7-A20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KirtleyRFSEK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KlotzbucherKSSMWB11,
author = {Karin Klotzb{\"{u}}cher and
Yasushi Kobayashi and
Nino Shervashidze and
Oliver Stegle and
Bertram M{\"{u}}ller{-}Myhsok and
Detlef Weigel and
Karsten M. Borgwardt},
title = {Efficient branch-and-bound techniques for two-locus association mapping},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A3},
doi = {10.1186/1471-2105-12-S11-A3},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KlotzbucherKSSMWB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KohLPYNWVLL11,
author = {Geoffrey Koh and
Ariana Low and
Daren Poh and
Yujian Yao and
Say Ng and
Victor Wong and
Vincent Vagenende and
Kong{-}Peng Lam and
Dong{-}Yup Lee},
title = {Integrative analysis workflow for the structural and functional classification
of C-type lectins},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S5},
doi = {10.1186/1471-2105-12-S14-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KohLPYNWVLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KongMH11,
author = {Wei Kong and
Xiaoyang Mou and
Xiaohua Hu},
title = {Exploring matrix factorization techniques for significant genes identification
of Alzheimer's disease microarray gene expression data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S7},
doi = {10.1186/1471-2105-12-S5-S7},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KongMH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KoteraTKG11,
author = {Masaaki Kotera and
Toshiaki Tokimatsu and
Minoru Kanehisa and
Susumu Goto},
title = {{MUCHA:} multiple chemical alignment algorithm to identify building
block substructures of orphan secondary metabolites},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S1},
doi = {10.1186/1471-2105-12-S14-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KoteraTKG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11,
author = {Martin Krallinger and
Miguel Vazquez and
Florian Leitner and
David Salgado and
Andrew Chatr{-}aryamontri and
Andrew G. Winter and
Livia Perfetto and
Leonardo Briganti and
Luana Licata and
Marta Iannuccelli and
Luisa Castagnoli and
Gianni Cesareni and
Mike Tyers and
Gerold Schneider and
Fabio Rinaldi and
Robert Leaman and
Graciela Gonzalez and
S{\'{e}}rgio Matos and
Sun Kim and
W. John Wilbur and
Luis M. Rocha and
Hagit Shatkay and
Ashish V. Tendulkar and
Shashank Agarwal and
Feifan Liu and
Xinglong Wang and
Rafal Rak and
Keith Noto and
Charles Elkan and
Zhiyong Lu},
title = {The Protein-Protein Interaction tasks of BioCreative {III:} classification/ranking
of articles and linking bio-ontology concepts to full text},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S3},
doi = {10.1186/1471-2105-12-S8-S3},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuoLH11,
author = {Cheng{-}Ju Kuo and
Maurice H. T. Ling and
Chun{-}Nan Hsu},
title = {Soft tagging of overlapping high confidence gene mention variants
for cross-species full-text gene normalization},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S6},
doi = {10.1186/1471-2105-12-S8-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KuoLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KwanKK11,
author = {Benjamin Y. M. Kwan and
Jennifer Y. Y. Kwan and
Hon Keung Kwan},
title = {Spectral classification of short numerical exon and intron sequences},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A13},
doi = {10.1186/1471-2105-12-S11-A13},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KwanKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KyogokuFOO11,
author = {Riku Kyogoku and
Ryo Fujimoto and
Tomonobu Ozaki and
Takenao Ohkawa},
title = {A method for supporting retrieval of articles on protein structure
analysis considering users' intention},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S42},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S42},
doi = {10.1186/1471-2105-12-S1-S42},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KyogokuFOO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LarosBDT11,
author = {Jeroen F. J. Laros and
Andr{\'{e}} Blavier and
Johan T. den Dunnen and
Peter E. M. Taschner},
title = {A formalized description of the standard human variant nomenclature
in Extended Backus-Naur Form},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S5},
doi = {10.1186/1471-2105-12-S4-S5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LarosBDT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeLCBCSH11,
author = {Tzong{-}Yi Lee and
Cheng{-}Tsung Lu and
Shu{-}An Chen and
Neil Arvin Breta{\~{n}}a and
Tzu{-}Hsiu Cheng and
Min{-}Gang Su and
Kai{-}Yao Huang},
title = {Investigation and identification of protein {\(\gamma\)}-glutamyl
carboxylation sites},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S10},
doi = {10.1186/1471-2105-12-S13-S10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeLCBCSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeLSL11,
author = {Sejoon Lee and
Kwang H. Lee and
Min Song and
Doheon Lee},
title = {Building the process-drug-side effect network to discover the relationship
between biological Processes and side effects},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-2}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S2-S2},
doi = {10.1186/1471-2105-12-S2-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeLSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeePLHCYL11,
author = {Jinsoo Lee and
Minh{-}Duc Pham and
Jihwan Lee and
Wook{-}Shin Han and
Hune Cho and
Hwanjo Yu and
Jeong{-}Hoon Lee},
title = {Processing {SPARQL} queries with regular expressions in {RDF} databases},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-2}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S2-S6},
doi = {10.1186/1471-2105-12-S2-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeePLHCYL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeTYLKHLHK11,
author = {Sheng{-}An Lee and
Theresa Tsao and
Ko{-}Chun Yang and
Han Lin and
Yu{-}Lun Kuo and
Chien{-}Hsiang Hsu and
Wen{-}Kuei Lee and
Kuo{-}Chuan Huang and
Cheng{-}Yan Kao},
title = {Construction and analysis of the protein-protein interaction networks
for schizophrenia, bipolar disorder, and major depression},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S20},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S20},
doi = {10.1186/1471-2105-12-S13-S20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeTYLKHLHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeW11,
author = {Nung Kion Lee and
Dianhui Wang},
title = {{SOMEA:} self-organizing map based extraction algorithm for {DNA}
motif identification with heterogeneous model},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S16},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S16},
doi = {10.1186/1471-2105-12-S1-S16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiCLTHJCCL11,
author = {Sung{-}Chou Li and
Wen{-}Ching Chan and
Chun{-}Hung Lai and
Kuo{-}Wang Tsai and
Chun{-}Nan Hsu and
Yuh{-}Shan Jou and
Hua{-}Chien Chen and
Chun{-}Hong Chen and
Wen{-}Chang Lin},
title = {{UMARS:} Un-MAppable Reads Solution},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S9},
doi = {10.1186/1471-2105-12-S1-S9},
timestamp = {Mon, 23 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiCLTHJCCL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiGPZW11,
author = {Ying Li and
Ping Gong and
Edward J. Perkins and
Chaoyang Zhang and
Nan Wang},
title = {RefNetBuilder: a platform for construction of integrated reference
gene regulatory networks from expressed sequence tags},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S20},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S20},
doi = {10.1186/1471-2105-12-S10-S20},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiGPZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiJ11,
author = {Weixi Li and
Jerzy W. Jaromczyk},
title = {MSCTrees: a mean-shift based toolkit for cluster analysis of phylogenetic
trees},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A13},
doi = {10.1186/1471-2105-12-S7-A13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiR11,
author = {Dazhuo Li and
Eric C. Rouchka},
title = {Integrative biclustering of heterogeneous datasets using a Bayesian
nonparametric model with application to chemogenomics},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A6},
doi = {10.1186/1471-2105-12-S7-A6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZLC11,
author = {Fengjun Li and
Xukai Zou and
Peng Liu and
Jake Y. Chen},
title = {New threats to health data privacy},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S7},
doi = {10.1186/1471-2105-12-S12-S7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LimRT11,
author = {See Ven Lim and
Mohd Basyaruddin Abdul Rahman and
Bimo Ario Tejo},
title = {Structure-based and ligand-based virtual screening of novel methyltransferase
inhibitors of the dengue virus},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S24},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S24},
doi = {10.1186/1471-2105-12-S13-S24},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LimRT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinLHC11,
author = {Chieh Hua Lin and
Chun{-}Yi Lian and
Chao A. Hsiung and
Feng{-}Chi Chen},
title = {Changes in transcriptional orientation are associated with increases
in evolutionary rates of enterobacterial genes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S19},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S19},
doi = {10.1186/1471-2105-12-S9-S19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LinLHC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuLGPSYHLGJLC11,
author = {Chang Liu and
Dong Liang and
Ting Gao and
Xiaohui Pang and
Jingyuan Song and
Hui Yao and
Jianping Han and
Zhihua Liu and
Xiaojun Guan and
Kun Jiang and
Huan Li and
Shilin Chen},
title = {PTIGS-IdIt, a system for species identification by {DNA} sequences
of the psbA-trnH intergenic spacer region},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S4},
doi = {10.1186/1471-2105-12-S13-S4},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuLGPSYHLGJLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuLN11,
author = {Yang Liu and
Yiu Lee and
Michael K. Ng},
title = {{SNP} and gene networks construction and analysis from classification
of copy number variations data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S4},
doi = {10.1186/1471-2105-12-S5-S4},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuLN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuLUZGSZDY11,
author = {Sanmin Liu and
Lantao Liu and
Ugur Uzuner and
Xin Zhou and
Manxi Gu and
Weibing Shi and
Yixiang Zhang and
Susie Y. Dai and
Joshua S. Yuan},
title = {HDX-Analyzer: a novel package for statistical analysis of protein
structure dynamics},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S43},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S43},
doi = {10.1186/1471-2105-12-S1-S43},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuLUZGSZDY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuYH11,
author = {Chengcheng Liu and
Mingxi Yao and
Christopher W. V. Hogue},
title = {Near-membrane ensemble elongation in the proline-rich {LRP6} intracellular
domain may explain the mysterious initiation of the Wnt signaling
pathway},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S13},
doi = {10.1186/1471-2105-12-S13-S13},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuYH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoBBB11,
author = {Christine Lo and
Ali Bashir and
Vikas Bansal and
Vineet Bafna},
title = {Strobe sequence design for haplotype assembly},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S24},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S24},
doi = {10.1186/1471-2105-12-S1-S24},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LoBBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LouLQYLNLTC11,
author = {Shao{-}Ke Lou and
Jing{-}Woei Li and
Hao Qin and
Aldrin Kay{-}Yuen Yim and
Leung{-}Yau Lo and
Bing Ni and
Kwong{-}Sak Leung and
Stephen Kwok{-}Wing Tsui and
Ting{-}Fung Chan},
title = {Detection of splicing events and multiread locations from RNA-seq
data based on a geometric-tail {(GT)} distribution of intron length},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S2},
doi = {10.1186/1471-2105-12-S5-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LouLQYLNLTC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LourencoCWNPSR11,
author = {An{\'{a}}lia Louren{\c{c}}o and
Michael D. Conover and
Andrew Wong and
Azadeh Nematzadeh and
Fengxia Pan and
Hagit Shatkay and
Luis M. Rocha},
title = {A linear classifier based on entity recognition tools and a statistical
approach to method extraction in the protein-protein interaction literature},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S12},
doi = {10.1186/1471-2105-12-S8-S12},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LourencoCWNPSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11,
author = {Zhiyong Lu and
Hung{-}Yu Kao and
Chih{-}Hsuan Wei and
Minlie Huang and
Jingchen Liu and
Cheng{-}Ju Kuo and
Chun{-}Nan Hsu and
Richard Tzong{-}Han Tsai and
Hong{-}Jie Dai and
Naoaki Okazaki and
Han{-}Cheol Cho and
Martin Gerner and
Ill{\'{e}}s Solt and
Shashank Agarwal and
Feifan Liu and
Dina Vishnyakova and
Patrick Ruch and
Martin Romacker and
Fabio Rinaldi and
Sanmitra Bhattacharya and
Padmini Srinivasan and
Hongfang Liu and
Manabu Torii and
S{\'{e}}rgio Matos and
David Campos and
Karin Verspoor and
Kevin M. Livingston and
W. John Wilbur},
title = {The gene normalization task in BioCreative {III}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S2},
doi = {10.1186/1471-2105-12-S8-S2},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LvHP11,
author = {Jie Lv and
Paul Havlak and
Nicholas H. Putnam},
title = {Constraints on genes shape long-term conservation of macro-synteny
in metazoan genomes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S11},
doi = {10.1186/1471-2105-12-S9-S11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LvHP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MalekASMS11,
author = {Sorayya Malek and
Sharifah Syed Ahmad and
Sarinder Kaur Singh and
Pozi Milow and
Aishah Salleh},
title = {Assessment of predictive models for chlorophyll-a concentration of
a tropical lake},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S12},
doi = {10.1186/1471-2105-12-S13-S12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MalekASMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarkovetsH11,
author = {Aleksandra Markovets and
Damir Herman},
title = {Analysis of cancer metabolism with high-throughput technologies},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S8},
doi = {10.1186/1471-2105-12-S10-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MarkovetsH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarthaLGSYFDTX11,
author = {Venkata Swamy Martha and
Zhichao Liu and
Li Guo and
Zhenqiang Su and
Yanbin Ye and
Hong Fang and
Don Ding and
Weida Tong and
Xiaowei Xu},
title = {Constructing a robust protein-protein interaction network by integrating
multiple public databases},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S7},
doi = {10.1186/1471-2105-12-S10-S7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MarthaLGSYFDTX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MartinezB11,
author = {David Mart{\'{\i}}nez and
Timothy Baldwin},
title = {Word sense disambiguation for event trigger word detection in biomedicine},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-2}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S2-S4},
doi = {10.1186/1471-2105-12-S2-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MartinezB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MatthewsW11,
author = {Suzanne J. Matthews and
Tiffani L. Williams},
title = {An efficient and extensible approach for compressing phylogenetic
trees},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S16},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S16},
doi = {10.1186/1471-2105-12-S10-S16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MatthewsW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MayoPG11,
author = {Michael L. Mayo and
Edward J. Perkins and
Preetam Ghosh},
title = {First-passage time analysis of a one-dimensional diffusion-reaction
model: application to protein transport along {DNA}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S18},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S18},
doi = {10.1186/1471-2105-12-S10-S18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MayoPG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McElroyLHRT11,
author = {Kerensa McElroy and
Fabio Luciani and
Janice Hui and
Scott Rice and
Torsten Thomas},
title = {Bacteriophage evolution drives Pseudomonas aeruginosa {PAO1} biofilm
diversification},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A2},
doi = {10.1186/1471-2105-12-S11-A2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/McElroyLHRT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MishraK11,
author = {Mrinal Mishra and
Ambuj Kumar},
title = {Computational analysis of genetic network involved in pancreatic cancer
in human},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A11},
doi = {10.1186/1471-2105-12-S11-A11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MishraK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MitraRRUGMWH11,
author = {Suparna Mitra and
Paul Rupek and
Daniel C. Richter and
Tim Urich and
Jack A. Gilbert and
Folker Meyer and
Andreas Wilke and
Daniel H. Huson},
title = {Functional analysis of metagenomes and metatranscriptomes using {SEED}
and {KEGG}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S21},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S21},
doi = {10.1186/1471-2105-12-S1-S21},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MitraRRUGMWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MonjiKOO11,
author = {Hiroyuki Monji and
Satoshi Koizumi and
Tomonobu Ozaki and
Takenao Ohkawa},
title = {Interaction site prediction by structural similarity to neighboring
clusters in protein-protein interaction networks},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S39},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S39},
doi = {10.1186/1471-2105-12-S1-S39},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MonjiKOO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoritzKRIAPCC11,
author = {Tom Moritz and
S. Krishnan and
Dave Roberts and
Peter Ingwersen and
Donat Agosti and
Lyubomir Penev and
Matthew J. Cockerill and
Vishwas Chavan},
title = {Towards mainstreaming of biodiversity data publishing: recommendations
of the {GBIF} Data Publishing Framework Task Group},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-15}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S15-S1},
doi = {10.1186/1471-2105-12-S15-S1},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoritzKRIAPCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MuradSY11,
author = {William Murad and
Rahul Singh and
Ten{-}Yang Yen},
title = {An efficient algorithmic approach for mass spectrometry-based disulfide
connectivity determination using multi-ion analysis},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S12},
doi = {10.1186/1471-2105-12-S1-S12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MuradSY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NairRH11,
author = {Smitha Nair and
N. V. Subba Reddy and
K. S. Hareesha},
title = {Exploiting heterogeneous features to improve in silico prediction
of peptide status - amyloidogenic or non-amyloidogenic},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S21},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S21},
doi = {10.1186/1471-2105-12-S13-S21},
timestamp = {Fri, 19 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NairRH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NanFZLPLDDDCW11,
author = {Xiaofei Nan and
Gang Fu and
Zhengdong Zhao and
Sheng Liu and
Ronak Y. Patel and
Haining Liu and
Pankaj R. Daga and
Robert J. Doerksen and
Xin Dang and
Yixin Chen and
Dawn Wilkins},
title = {Leveraging domain information to restructure biological prediction},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S22},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S22},
doi = {10.1186/1471-2105-12-S10-S22},
timestamp = {Wed, 11 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NanFZLPLDDDCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NasserCBK11,
author = {Sara Nasser and
Heather E. Cunliffe and
Michael A. Black and
Seungchan Kim},
title = {Context-specific gene regulatory networks subdivide intrinsic subtypes
of breast cancer},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-2}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S2-S3},
doi = {10.1186/1471-2105-12-S2-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NasserCBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParidaPJ11,
author = {Laxmi Parida and
Pier Palamara and
Asif Javed},
title = {A minimal descriptor of an ancestral recombinations graph},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S6},
doi = {10.1186/1471-2105-12-S1-S6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ParidaPJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkB11,
author = {Yongjin Park and
Joel S. Bader},
title = {Resolving the structure of interactomes with hierarchical agglomerative
clustering},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S44},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S44},
doi = {10.1186/1471-2105-12-S1-S44},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkK11,
author = {Keunwan Park and
Dongsup Kim},
title = {Modeling allosteric signal propagation using protein structure networks},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S23},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S23},
doi = {10.1186/1471-2105-12-S1-S23},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkKLYK11,
author = {Yu Rang Park and
Jihun Kim and
Hye Won Lee and
Young Jo Yoon and
Ju Han Kim},
title = {GOChase-II: correcting semantic inconsistencies from Gene Ontology-based
annotations for gene products},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S40},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S40},
doi = {10.1186/1471-2105-12-S1-S40},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkKLYK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkN11,
author = {Sung{-}Joon Park and
Kenta Nakai},
title = {A regression analysis of gene expression in {ES} cells reveals two
gene classes that are significantly different in epigenetic patterns},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S50},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S50},
doi = {10.1186/1471-2105-12-S1-S50},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParrishHE11,
author = {Nathaniel Parrish and
Farhad Hormozdiari and
Eleazar Eskin},
title = {Assembly of non-unique insertion content using next-generation sequencing},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-6}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S6-S3},
doi = {10.1186/1471-2105-12-S6-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParrishHE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PawarDR11,
author = {Shrikant Pawar and
Cheryl D. Davis and
Claire A. Rinehart},
title = {Statistical analysis of microarray gene expression data from a mouse
model of toxoplasmosis},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A19},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A19},
doi = {10.1186/1471-2105-12-S7-A19},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PawarDR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PhanVS11,
author = {Vinhthuy T. Phan and
Nam S. Vo and
Thomas R. Sutter},
title = {mDAG: a web-based tool for analyzing microarray data with multiple
treatments},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A7},
doi = {10.1186/1471-2105-12-S7-A7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PhanVS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PoirelOM11,
author = {Christopher L. Poirel and
Clifford Conley Owens III and
T. M. Murali},
title = {Network-based functional enrichment},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S14},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S14},
doi = {10.1186/1471-2105-12-S13-S14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PoirelOM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QianSY11,
author = {Xiaoning Qian and
Sayed Mohammad Ebrahim Sahraeian and
Byung{-}Jun Yoon},
title = {Enhancing the accuracy of HMM-based conserved pathway prediction using
global correspondence scores},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S6},
doi = {10.1186/1471-2105-12-S10-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QianSY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QianY11,
author = {Xiaoning Qian and
Byung{-}Jun Yoon},
title = {Comparative analysis of protein interaction networks reveals that
conserved pathways are susceptible to {HIV-1} interception},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S19},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S19},
doi = {10.1186/1471-2105-12-S1-S19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QianY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RaihH0A11,
author = {Mohd Firdaus Raih and
Anne{-}Marie Harrison and
Peter Willett and
Peter J. Artymiuk},
title = {Novel base triples in {RNA} structures revealed by graph theoretical
searching methods},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S2},
doi = {10.1186/1471-2105-12-S13-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RaihH0A11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RajapakseM11,
author = {Jagath C. Rajapakse and
Piyushkumar A. Mundra},
title = {Stability of building gene regulatory networks with sparse autoregressive
models},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S17},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S17},
doi = {10.1186/1471-2105-12-S13-S17},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RajapakseM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RanganathanSKRNT11,
author = {Shoba Ranganathan and
Christian Sch{\"{o}}nbach and
Janet Kelso and
Burkhard Rost and
Sheila Nathan and
Tin Wee Tan},
title = {Towards big data science in the decade ahead from ten years of InCoB
and the 1st ISCB-Asia Joint Conference},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S1},
doi = {10.1186/1471-2105-12-S13-S1},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RanganathanSKRNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReylesP11,
author = {Jonathan Reyles and
Charles Phillips},
title = {Comparative studies of high-throughput biological graphs},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A12},
doi = {10.1186/1471-2105-12-S7-A12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReylesP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RhoKJLBSSLKYKLK11,
author = {Kyoohyoung Rho and
Bumjin Kim and
Youngjun Jang and
Sanghyun Lee and
Taejeong Bae and
Jihae Seo and
Chae Hwa Seo and
Ji{-}Hyun Lee and
Hyunjung Kang and
Ungsik Yu and
Sunghoon Kim and
Sanghyuk Lee and
Wan Kyu Kim},
title = {{GARNET} - gene set analysis with exploration of annotation relations},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S25},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S25},
doi = {10.1186/1471-2105-12-S1-S25},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RhoKJLBSSLKYKLK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RiazanovBB11,
author = {Alexandre Riazanov and
Jonas Laurila Bergman and
Christopher J. O. Baker},
title = {Deploying mutation impact text-mining software with the {SADI} Semantic
Web Services framework},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S6},
doi = {10.1186/1471-2105-12-S4-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RiazanovBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RobertsM11,
author = {Dave Roberts and
Tom Moritz},
title = {A framework for publishing primary biodiversity data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-15}},
pages = {I1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S15-I1},
doi = {10.1186/1471-2105-12-S15-I1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RobertsM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RouchkaFH11,
author = {Eric C. Rouchka and
Robert M. Flight and
Ramin Homayouni},
title = {Proceedings of the Tenth Annual {UT-ORNL-KBRIN} Bioinformatics Summit
2011},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A1},
doi = {10.1186/1471-2105-12-S7-A1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RouchkaFH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoyHPBH11,
author = {Sujoy Roy and
Kevin Heinrich and
Vinhthuy Phan and
Michael W. Berry and
Ramin Homayouni},
title = {Latent Semantic Indexing of PubMed abstracts for identification of
transcription factor candidates from microarray derived gene sets},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S19},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S19},
doi = {10.1186/1471-2105-12-S10-S19},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RoyHPBH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RuanPHLSS11,
author = {Jianhua Ruan and
Joseph Perez and
Brian Hernandez and
Chengwei Lei and
Garry Sunter and
Valerie M. Sponsel},
title = {Systematic identification of functional modules and cis-regulatory
elements in Arabidopsis thaliana},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S2},
doi = {10.1186/1471-2105-12-S12-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RuanPHLSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SahraeianY11,
author = {Sayed Mohammad Ebrahim Sahraeian and
Byung{-}Jun Yoon},
title = {PicXAA-R: Efficient structural alignment of multiple {RNA} sequences
using a greedy approach},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S38},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S38},
doi = {10.1186/1471-2105-12-S1-S38},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SahraeianY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaitoSS11,
author = {Yutaka Saito and
Kengo Sato and
Yasubumi Sakakibara},
title = {Fast and accurate clustering of noncoding RNAs using ensembles of
sequence alignments and secondary structures},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S48},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S48},
doi = {10.1186/1471-2105-12-S1-S48},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaitoSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SarkarKS11,
author = {Anita Sarkar and
Sonu Kumar and
Durai Sundar},
title = {The {G} protein-coupled receptors in the pufferfish Takifugu rubripes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S3},
doi = {10.1186/1471-2105-12-S1-S3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SarkarKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SarkarSN11,
author = {Anasua Sarkar and
Hayssam Soueidan and
Macha Nikolski},
title = {Identification of conserved gene clusters in multiple genomes based
on synteny and homology},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S18},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S18},
doi = {10.1186/1471-2105-12-S9-S18},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SarkarSN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SavardBE11,
author = {Olivier Tremblay Savard and
Denis Bertrand and
Nadia El{-}Mabrouk},
title = {Evolution of orthologous tandemly arrayed gene clusters},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S2},
doi = {10.1186/1471-2105-12-S9-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SavardBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchneiderCR11,
author = {Gerold Schneider and
Simon Clematide and
Fabio Rinaldi},
title = {Detection of interaction articles and experimental methods in biomedical
literature},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S13},
doi = {10.1186/1471-2105-12-S8-S13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchneiderCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchultheissJBBDGKMSZR11,
author = {Sebastian J. Schulthei{\ss} and
G{\'{e}}raldine Jean and
Jonas Behr and
Regina Bohnert and
Philipp Drewe and
Nico G{\"{o}}rnitz and
Andr{\'{e}} Kahles and
Pramod Mudrakarta and
Vipin T. Sreedharan and
Georg Zeller and
Gunnar R{\"{a}}tsch},
title = {Oqtans: a Galaxy-integrated workflow for quantitative transcriptome
analysis from {NGS} Data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A7},
doi = {10.1186/1471-2105-12-S11-A7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchultheissJBBDGKMSZR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Segura-BedmarMP11,
author = {Isabel Segura{-}Bedmar and
Paloma Mart{\'{\i}}nez and
C{\'{e}}sar de Pablo{-}S{\'{a}}nchez},
title = {A linguistic rule-based approach to extract drug-drug interactions
from pharmacological documents},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-2}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S2-S1},
doi = {10.1186/1471-2105-12-S2-S1},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Segura-BedmarMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SeoigheK11,
author = {Cathal Seoighe and
Paul K. Korir},
title = {Evidence for intron length conservation in a set of mammalian genes
associated with embryonic development},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S16},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S16},
doi = {10.1186/1471-2105-12-S9-S16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SeoigheK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShaoWWYLZB11,
author = {Mingfu Shao and
Sheng Wang and
Chao Wang and
Xiongying Yuan and
Shuai Li and
Wei{-}Mou Zheng and
Dongbo Bu},
title = {Incorporating Ab Initio energy into threading approaches for protein
structure prediction},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S54},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S54},
doi = {10.1186/1471-2105-12-S1-S54},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShaoWWYLZB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShenGP11,
author = {Yufeng Shen and
Yiwei Gu and
Itsik Pe'er},
title = {A Hidden Markov Model for Copy Number Variant prediction from whole
genome resequencing data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-6}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S6-S4},
doi = {10.1186/1471-2105-12-S6-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShenGP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShimizuNA11,
author = {Masaaki Shimizu and
Hiroshi Nagamochi and
Tatsuya Akutsu},
title = {Enumerating tree-like chemical graphs with given upper and lower bounds
on path frequencies},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S3},
doi = {10.1186/1471-2105-12-S14-S3},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShimizuNA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohDGW11,
author = {Donny Soh and
Difeng Dong and
Yike Guo and
Limsoon Wong},
title = {Finding consistent disease subnetworks across microarray datasets},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S15},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S15},
doi = {10.1186/1471-2105-12-S13-S15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohDGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongHRM11,
author = {Giltae Song and
Chih{-}Hao Hsu and
Cathy Riemer and
Webb Miller},
title = {Evaluation of methods for detecting conversion events in gene clusters},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S45},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S45},
doi = {10.1186/1471-2105-12-S1-S45},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongHRM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongPCSKK11,
author = {Young Soo Song and
Chan Hee Park and
Hee{-}Joon Chung and
Hyunjung Shin and
Jihun Kim and
Ju Han Kim},
title = {Semantically enabled and statistically supported biological hypothesis
testing with tissue microarray databases},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S51},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S51},
doi = {10.1186/1471-2105-12-S1-S51},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SongPCSKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongYH11,
author = {Min Song and
Hwanjo Yu and
Wook{-}Shin Han},
title = {Combining active learning and semi-supervised learning techniques
to extract protein interaction sentences},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S4},
doi = {10.1186/1471-2105-12-S12-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongYH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuBBAM11,
author = {Gang Su and
Charles F. Burant and
Christopher W. Beecher and
Brian D. Athey and
Fan Meng},
title = {Integrated metabolome and transcriptome analysis of the {NCI60} dataset},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S36},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S36},
doi = {10.1186/1471-2105-12-S1-S36},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuBBAM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuerKM11,
author = {Sait Suer and
Sinan Kockara and
Mutlu Mete},
title = {An improved border detection in dermoscopy images for density based
clustering},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S12},
doi = {10.1186/1471-2105-12-S10-S12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuerKM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuzukiYSMN11,
author = {Shin Suzuki and
Tomohiro Yasuda and
Yuichi Shiraishi and
Satoru Miyano and
Masao Nagasaki},
title = {ClipCrop: a tool for detecting structural variations with single-base
resolution using soft-clipping information},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S7},
doi = {10.1186/1471-2105-12-S14-S7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuzukiYSMN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TabbL11,
author = {David L. Tabb and
Daniel C. Liebler},
title = {Bioinformatic challenges for proteomic biomarkers of cancer},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A17},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A17},
doi = {10.1186/1471-2105-12-S7-A17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TabbL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TambunanBP11,
author = {Usman Sumo Friend Tambunan and
N. Bramantya and
Arli A. Parikesit},
title = {In silico modification of suberoylanilide hydroxamic acid {(SAHA)}
as potential inhibitor for class {II} histone deacetylase {(HDAC)}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S23},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S23},
doi = {10.1186/1471-2105-12-S13-S23},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TambunanBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TendulkarW11,
author = {Ashish V. Tendulkar and
Pramod P. Wangikar},
title = {Characterization and sequence prediction of structural variations
in {\(\alpha\)}-helix},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S20},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S20},
doi = {10.1186/1471-2105-12-S1-S20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TendulkarW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThomasKFHF11,
author = {Philippe E. Thomas and
Roman Klinger and
Laura In{\'{e}}s Furlong and
Martin Hofmann{-}Apitius and
Christoph M. Friedrich},
title = {Challenges in the association of human single nucleotide polymorphism
mentions with unique database identifiers},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S4},
doi = {10.1186/1471-2105-12-S4-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThomasKFHF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThomasVO11,
author = {Antoine Thomas and
Jean{-}St{\'{e}}phane Varr{\'{e}} and
A{\"{\i}}da Ouangraoua},
title = {Genome dedoubling by {DCJ} and reversal},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S20},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S20},
doi = {10.1186/1471-2105-12-S9-S20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThomasVO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Totrov11,
author = {Maxim Totrov},
title = {Ligand binding site superposition and comparison based on Atomic Property
Fields: identification of distant homologues, convergent evolution
and PDB-wide clustering of binding sites},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S35},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S35},
doi = {10.1186/1471-2105-12-S1-S35},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Totrov11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsaiL11a,
author = {Richard Tzong{-}Han Tsai and
Po{-}Ting Lai},
title = {Multi-stage gene normalization for full-text articles with context-based
species filtering for dynamic dictionary entry selection},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S7},
doi = {10.1186/1471-2105-12-S8-S7},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TsaiL11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VadlamudiJH11,
author = {Laasya Vadlamudi and
Lynn A. Jones and
Ramin Homayouni},
title = {ColonyTrak: a web tool and database system for managing experimental
animal models},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A11},
doi = {10.1186/1471-2105-12-S7-A11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VadlamudiJH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeronikaWNMR11,
author = {Merlin Veronika and
Roy E. Welsch and
Alvin Ng and
Paul Matsudaira and
Jagath C. Rajapakse},
title = {Correlation of cell membrane dynamics and cell motility},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S19},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S19},
doi = {10.1186/1471-2105-12-S13-S19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VeronikaWNMR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ViangteeravatNAKBM11,
author = {Teeradache Viangteeravat and
Venkateswara Nagisetty and
Matthew N. Anyanwu and
Emin Kuscu and
Ian M. Brooks and
Chanchai McDonald},
title = {Protected Research Information Management Environment {(PRIME)} provides
a secure open source data management option for clinical and scientific
research},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A8},
doi = {10.1186/1471-2105-12-S7-A8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ViangteeravatNAKBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangGJBWCZ11,
author = {Ying Wang and
Noushin Ghaffari and
Charles D. Johnson and
Ulisses M. Braga{-}Neto and
Hui Wang and
Rui Chen and
Huaijun Zhou},
title = {Evaluation of the coverage and depth of transcriptome by RNA-Seq in
chickens},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S5},
doi = {10.1186/1471-2105-12-S10-S5},
timestamp = {Fri, 24 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangGJBWCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangJGLHBHWG11,
author = {Lishi Wang and
Yan Jiao and
Griffin Gibson and
Xiaoyun Liu and
Yue Huang and
Beth Bennett and
Kristin Hamre and
Robert W. Williams and
Weikuan Gu},
title = {Identification of alcohol preference relevant genes in {QTL} on mouse
chromosome 2},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A2},
doi = {10.1186/1471-2105-12-S7-A2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangJGLHBHWG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangRRNRBNA11,
author = {Xinglong Wang and
Rafal Rak and
Angelo C. Restificar and
Chikashi Nobata and
C. J. Rupp and
Riza Theresa Batista{-}Navarro and
Raheel Nawaz and
Sophia Ananiadou},
title = {Detecting experimental techniques and selecting relevant documents
for protein-protein interactions from biomedical literature},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S11},
doi = {10.1186/1471-2105-12-S8-S11},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangRRNRBNA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangZS11,
author = {Baoyong Wang and
Chunfang Zheng and
David Sankoff},
title = {Fractionation statistics},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S5},
doi = {10.1186/1471-2105-12-S9-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangZS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeiK11,
author = {Chih{-}Hsuan Wei and
Hung{-}Yu Kao},
title = {Cross-species gene normalization by species inference},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S5},
doi = {10.1186/1471-2105-12-S8-S5},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeiK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WengCHL11,
author = {Yi{-}Zhong Weng and
Darby Tien{-}Hao Chang and
Yu{-}Feng Huang and
Chih{-}Wei Lin},
title = {A study on the flexibility of enzyme active sites},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S32},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S32},
doi = {10.1186/1471-2105-12-S1-S32},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WengCHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilburK11,
author = {W. John Wilbur and
Won Kim},
title = {Improving a gold standard: treating human relevance judgments of {MEDLINE}
document pairs},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S5},
doi = {10.1186/1471-2105-12-S3-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilburK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Winters-HiltHM11,
author = {Stephen Winters{-}Hilt and
Evenie Horton{-}Chao and
Eric Morales},
title = {The {NTD} Nanoscope: potential applications and implementations},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S21},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S21},
doi = {10.1186/1471-2105-12-S10-S21},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Winters-HiltHM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WittlerC11,
author = {Roland Wittler and
C{\'{e}}dric Chauve},
title = {Consistency-based detection of potential tumor-specific deletions
in matched normal/tumor genomes},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S21},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S21},
doi = {10.1186/1471-2105-12-S9-S21},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WittlerC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WoodcroftRYSDDMTSR11,
author = {Ben J. Woodcroft and
Robert Radloff and
Lee M. Yeoh and
Kristie{-}Lee Scanlon and
Maria A. Doyle and
Giel G. van Dooren and
Geoffrey I. McFadden and
Christopher J. Tonkin and
Terence P. Speed and
Stuart A. Ralph},
title = {An integrative bioinformatic predictor of protein sub-cellular localisation
in malaria},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A6},
doi = {10.1186/1471-2105-12-S11-A6},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WoodcroftRYSDDMTSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WrenKPBWDB11,
author = {Jonathan D. Wren and
Doris M. Kupfer and
Edward J. Perkins and
Susan Bridges and
Stephen Winters{-}Hilt and
Mikhail G. Dozmorov and
Ulisses M. Braga{-}Neto},
title = {Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics
Society {(MCBIOS)} Conference},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S1},
doi = {10.1186/1471-2105-12-S10-S1},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WrenKPBWDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuCW11,
author = {Gene P. K. Wu and
Keith C. C. Chan and
Andrew K. C. Wong},
title = {Unsupervised fuzzy pattern discovery in gene expression data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S5},
doi = {10.1186/1471-2105-12-S5-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuZ11,
author = {Taoyang Wu and
Louxin Zhang},
title = {Structural properties of the reconciliation space and their applications
in enumerating nearly-optimal reconciliations between a gene tree
and a species tree},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S7},
doi = {10.1186/1471-2105-12-S9-S7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaDLT11,
author = {Fei Xia and
Yong Dou and
Guo{-}Qing Lei and
Yusong Tan},
title = {{FPGA} accelerator for protein secondary structure prediction based
on the {GOR} algorithm},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S5},
doi = {10.1186/1471-2105-12-S1-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaDLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiongFB11,
author = {Fei Xiong and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
title = {Planning combinatorial disulfide cross-links for protein fold determination},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S5},
doi = {10.1186/1471-2105-12-S12-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiongFB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangAD11,
author = {Xiao Yang and
Srinivas Aluru and
Karin S. Dorman},
title = {Repeat-aware modeling and correction of short read errors},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S52},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S52},
doi = {10.1186/1471-2105-12-S1-S52},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangAD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangHYZ11,
author = {Pengyi Yang and
Joshua Wing Kei Ho and
Jean Yee Hwa Yang and
Bing Bing Zhou},
title = {Gene-gene interaction filtering with ensemble of filters},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S10},
doi = {10.1186/1471-2105-12-S1-S10},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangHYZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangW11,
author = {Jimmy Yang and
Tandy J. Warnow},
title = {Fast and accurate methods for phylogenomic analyses},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S4},
doi = {10.1186/1471-2105-12-S9-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangWHYXY11,
author = {Can Yang and
Xiang Wan and
Zengyou He and
Qiang Yang and
Hong Xue and
Weichuan Yu},
title = {The choice of null distributions for detecting gene-gene interactions
in genome-wide association studies},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S26},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S26},
doi = {10.1186/1471-2105-12-S1-S26},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangWHYXY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeganovaCW11,
author = {Lana Yeganova and
Donald C. Comeau and
W. John Wilbur},
title = {Machine learning with naturally labeled data for identifying abbreviation
definitions},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S6},
doi = {10.1186/1471-2105-12-S3-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YeganovaCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YiP11,
author = {Sung Yi and
Taesung Park},
title = {Integrated analysis of the heterogeneous microarray data},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S3},
doi = {10.1186/1471-2105-12-S5-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YiP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YinLHH11,
author = {Xiaoshi Yin and
Zhoujun Li and
Jimmy X. Huang and
Xiaohua Hu},
title = {Promoting ranking diversity for genomics search with relevance-novelty
combined model},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S8},
doi = {10.1186/1471-2105-12-S5-S8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YinLHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Yoon11,
author = {Byung{-}Jun Yoon},
title = {Enhanced stochastic optimization algorithm for finding effective multi-target
therapeutics},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S18},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S18},
doi = {10.1186/1471-2105-12-S1-S18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Yoon11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YoonYLKNPPL11,
author = {Joo Yoon and
Jeonghun Yeom and
Heebum Lee and
Kyutae Kim and
Seungjin Na and
Kunsoo Park and
Eunok Paek and
Cheolju Lee},
title = {High-throughput peptide quantification using mTRAQ reagent triplex},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S46},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S46},
doi = {10.1186/1471-2105-12-S1-S46},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YoonYLKNPPL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangC11,
author = {Fan Zhang and
Jake Y. Chen},
title = {{HOMER:} a human organ-specific molecular electronic repository},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-10}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S10-S4},
doi = {10.1186/1471-2105-12-S10-S4},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLH11,
author = {Jintao Zhang and
Gerald H. Lushington and
Jun Huan},
title = {The BioAssay network and its implications to future therapeutic discovery},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-5}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S5-S1},
doi = {10.1186/1471-2105-12-S5-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangSJ11,
author = {Wangshu Zhang and
Fengzhu Sun and
Rui Jiang},
title = {Integrating multiple protein-protein interaction networks to prioritize
disease genes: a Bayesian regression approach},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S11},
doi = {10.1186/1471-2105-12-S1-S11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangSJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZLT11,
author = {Xiaoli Zhang and
Jie Zou and
Daniel X. Le and
George R. Thoma},
title = {A structural {SVM} approach for reference parsing},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S7},
doi = {10.1186/1471-2105-12-S3-S7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoCBWSSMEM11,
author = {Hui Zhao and
Lore Cloots and
Tim Van den Bulcke and
Yan Wu and
Riet De Smet and
Valerie Storms and
Pieter Meysman and
Kristof Engelen and
Kathleen Marchal},
title = {Query-based biclustering of gene expression data using Probabilistic
Relational Models},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S37},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S37},
doi = {10.1186/1471-2105-12-S1-S37},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoCBWSSMEM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoWKLLH11,
author = {Qiong{-}Yi Zhao and
Yi Wang and
Yi{-}Meng Kong and
Da Luo and
Xuan Li and
Pei Hao},
title = {Optimizing de novo transcriptome assembly from short-read RNA-Seq
data: a comparative study},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S2},
doi = {10.1186/1471-2105-12-S14-S2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoWKLLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS11,
author = {Chunfang Zheng and
David Sankoff},
title = {On the {PATHGROUPS} approach to rapid small phylogeny},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S4},
doi = {10.1186/1471-2105-12-S1-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengWWL11,
author = {Guangyong Zheng and
Haibo Wang and
Chaochun Wei and
Yixue Li},
title = {iGepros: an integrated gene and protein annotation server for biological
nature exploration},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S6},
doi = {10.1186/1471-2105-12-S14-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengWWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengZ11,
author = {Siyuan Zheng and
Zhongming Zhao},
title = {Identifying the key genes and pathways in the progression of hepatitis
{C} virus induced hepatocellular carcinoma using a systems biology
approach},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-7}},
pages = {A4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S7-A4},
doi = {10.1186/1471-2105-12-S7-A4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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