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@article{DBLP:journals/bmcbi/0001RM14,
author = {Anirban Mukhopadhyay and
Sumanta Ray and
Ujjwal Maulik},
title = {Incorporating the type and direction information in predicting novel
regulatory interactions between {HIV-1} and human proteins using a
biclustering approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {26},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-26},
doi = {10.1186/1471-2105-15-26},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/0001RM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbbasDH14,
author = {Syed Abbas and
Tjeerd Dijkstra and
Tom Heskes},
title = {A comparative study of cell classifiers for image-based high-throughput
screening},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {342},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-342},
doi = {10.1186/1471-2105-15-342},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbbasDH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbelinMWMW14,
author = {Anna C. T. Abelin and
Georgi K. Marinov and
Brian A. Williams and
Kenneth McCue and
Barbara J. Wold},
title = {A ratiometric-based measure of gene co-expression},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {331},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-331},
doi = {10.1186/1471-2105-15-331},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbelinMWMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Abelson14,
author = {Sagi Abelson},
title = {Eureka-DMA: an easy-to-operate graphical user interface for fast comprehensive
investigation and analysis of {DNA} microarray data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {53},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-53},
doi = {10.1186/1471-2105-15-53},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Abelson14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Abu-JamousFRN14,
author = {Basel Abu{-}Jamous and
Rui Fa and
David Roberts and
Asoke K. Nandi},
title = {Comprehensive analysis of forty yeast microarray datasets reveals
a novel subset of genes (APha-RiB) consistently negatively associated
with ribosome biogenesis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {322},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-322},
doi = {10.1186/1471-2105-15-322},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Abu-JamousFRN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AcarPGRLNB14,
author = {Evrim Acar and
Evangelos E. Papalexakis and
Gozde G{\"{u}}rdeniz and
Morten A. Rasmussen and
Anders J. Lawaetz and
Mathias Nilsson and
Rasmus Bro},
title = {Structure-Revealing Data Fusion},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {239},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-239},
doi = {10.1186/1471-2105-15-239},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AcarPGRLNB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AcerbiZNS14,
author = {Enzo Acerbi and
Teresa Zelante and
Vipin Narang and
Fabio Stella},
title = {Gene network inference using continuous time Bayesian networks: a
comparative study and application to Th17 cell differentiation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {387},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0387-x},
doi = {10.1186/S12859-014-0387-X},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AcerbiZNS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AfzalPKSSK14,
author = {Zubair Afzal and
Ewoud Pons and
Ning Kang and
Miriam C. J. M. Sturkenboom and
Martijn J. Schuemie and
Jan A. Kors},
title = {ContextD: an algorithm to identify contextual properties of medical
terms in a Dutch clinical corpus},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {373},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0373-3},
doi = {10.1186/S12859-014-0373-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AfzalPKSSK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AggioMRPR14,
author = {Raphael B. M. Aggio and
Arno Mayor and
Sophie Reade and
Chris Probert and
Katya Ruggiero},
title = {Identifying and quantifying metabolites by scoring peaks of {GC-MS}
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {374},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0374-2},
doi = {10.1186/S12859-014-0374-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AggioMRPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AkanniCWP14,
author = {Wasiu A. Akanni and
Christopher J. Creevey and
Mark D. Wilkinson and
Davide Pisani},
title = {L.U.St: a tool for approximated maximum likelihood supertree reconstruction},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {183},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-183},
doi = {10.1186/1471-2105-15-183},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AkanniCWP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmmanWLHSF14,
author = {Fabian Amman and
Michael T. Wolfinger and
Ronny Lorenz and
Ivo L. Hofacker and
Peter F. Stadler and
Sven Findei{\ss}},
title = {{TSSAR:} {TSS} annotation regime for dRNA-seq data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {89},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-89},
doi = {10.1186/1471-2105-15-89},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AmmanWLHSF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnLSLN14,
author = {Jiyuan An and
John Lai and
Atul Sajjanhar and
Melanie L. Lehman and
Colleen C. Nelson},
title = {miRPlant: an integrated tool for identification of plant miRNA from
{RNA} sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {275},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-275},
doi = {10.1186/1471-2105-15-275},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AnLSLN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AndradeANT14,
author = {Helena Andrade and
Iv{\'{a}}n Area and
Juan J. Nieto and
Angela Torres},
title = {The number of reduced alignments between two {DNA} sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {94},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-94},
doi = {10.1186/1471-2105-15-94},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AndradeANT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AngeliniCF14,
author = {Claudia Angelini and
Daniela De Canditiis and
Italia De Feis},
title = {Computational approaches for isoform detection and estimation: good
and bad news},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {135},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-135},
doi = {10.1186/1471-2105-15-135},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AngeliniCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Angers-LoustauPBGRPK14,
author = {Alexandre Angers{-}Loustau and
Mauro Petrillo and
Laura Bonfini and
Francesco Gatto and
Sabrina Rosa and
Alexandre Patak and
Joachim Kreysa},
title = {{JRC} GMO-Matrix: a web application to support Genetically Modified
Organisms detection strategies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6592},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0417-8},
doi = {10.1186/S12859-014-0417-8},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Angers-LoustauPBGRPK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AoshimaTIKFTPFYUKTO14,
author = {Ken Aoshima and
Kentaro Takahashi and
Masayuki Ikawa and
Takayuki Kimura and
Mitsuru Fukuda and
Satoshi Tanaka and
Howell E. Parry and
Yuichiro Fujita and
Akiyasu C. Yoshizawa and
Shin{-}ichi Utsunomiya and
Shigeki Kajihara and
Koichi Tanaka and
Yoshiya Oda},
title = {A simple peak detection and label-free quantitation algorithm for
chromatography-mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {376},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0376-0},
doi = {10.1186/S12859-014-0376-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AoshimaTIKFTPFYUKTO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArcherWCHW14,
author = {John P. Archer and
Gareth Whiteley and
Nicholas R. Casewell and
Robert A. Harrison and
Simon C. Wagstaff},
title = {VTBuilder: a tool for the assembly of multi isoform transcriptomes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {389},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0389-8},
doi = {10.1186/S12859-014-0389-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArcherWCHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArendLCCFHS14,
author = {Daniel Arend and
Matthias Lange and
Jinbo Chen and
Christian Colmsee and
Steffen Flemming and
Denny Hecht and
Uwe Scholz},
title = {e!DAL - a framework to store, share and publish research data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {214},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-214},
doi = {10.1186/1471-2105-15-214},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArendLCCFHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArinkinDPAA14,
author = {Vladimir Arinkin and
Ilya Digel and
Dariusz Porst and
Ayseg{\"{u}}l Artmann and
Gerhard M. Artmann},
title = {Phenotyping date palm varieties via leaflet cross-sectional imaging
and artificial neural network application},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {55},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-55},
doi = {10.1186/1471-2105-15-55},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArinkinDPAA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AscensaoDHB14,
author = {Joao A. Ascensao and
Mary E. Dolan and
David P. Hill and
Judith A. Blake},
title = {Methodology for the inference of gene function from phenotype data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {405},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0405-z},
doi = {10.1186/S12859-014-0405-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AscensaoDHB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaierS14,
author = {Herbert Baier and
J{\"{o}}rg Schultz},
title = {{ISAAC} - InterSpecies Analysing Application using Containers},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {18},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-18},
doi = {10.1186/1471-2105-15-18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BaierS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaoYB14,
author = {Junpeng Bao and
Ruiyu Yuan and
Zhe Bao},
title = {An improved alignment-free model for dna sequence similarity metric},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {321},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-321},
doi = {10.1186/1471-2105-15-321},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BaoYB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BardouMEDK14,
author = {Philippe Bardou and
J{\'{e}}r{\^{o}}me Mariette and
Fr{\'{e}}d{\'{e}}ric Escudi{\'{e}} and
Christophe Djemiel and
Christophe Klopp},
title = {jvenn: an interactive Venn diagram viewer},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {293},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-293},
doi = {10.1186/1471-2105-15-293},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BardouMEDK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BartonHMP14,
author = {Carl Barton and
Alice H{\'{e}}liou and
Laurent Mouchard and
Solon P. Pissis},
title = {Linear-time computation of minimal absent words using suffix array},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {388},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0388-9},
doi = {10.1186/S12859-014-0388-9},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BartonHMP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeamMD14,
author = {Andrew L. Beam and
Alison A. Motsinger{-}Reif and
Jon Doyle},
title = {Bayesian neural networks for detecting epistasis in genetic association
studies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {368},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0368-0},
doi = {10.1186/S12859-014-0368-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BeamMD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BendellLAICKPZM14,
author = {Calem J. Bendell and
Shalon Liu and
Tristan Aumentado{-}Armstrong and
Bogdan Istrate and
Paul T. Cernek and
Samuel Khan and
Sergiu Picioreanu and
Michael Zhao and
Robert A. Murgita},
title = {Transient protein-protein interface prediction: datasets, features,
algorithms, and the {RAD-T} predictor},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {82},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-82},
doi = {10.1186/1471-2105-15-82},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BendellLAICKPZM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergRRR14,
author = {Bastiaan A. van den Berg and
Marcel J. T. Reinders and
Johannes A. Roubos and
Dick de Ridder},
title = {SPiCE: a web-based tool for sequence-based protein classification
and exploration},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {93},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-93},
doi = {10.1186/1471-2105-15-93},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BergRRR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14,
author = {Frank T. Bergmann and
Richard R. Adams and
Stuart L. Moodie and
Jonathan Cooper and
Mihai Glont and
Martin Golebiewski and
Michael Hucka and
Camille Laibe and
Andrew K. Miller and
David P. Nickerson and
Brett G. Olivier and
Nicolas Rodriguez and
Herbert M. Sauro and
Martin Scharm and
Stian Soiland{-}Reyes and
Dagmar Waltemath and
Florent Yvon and
Nicolas Le Nov{\`{e}}re},
title = {{COMBINE} archive and {OMEX} format: one file to share all information
to reproduce a modeling project},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {369},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0369-z},
doi = {10.1186/S12859-014-0369-Z},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Bermejo-Das-NevesNPT14,
author = {Carlos Bermejo{-}Das{-}Neves and
Hoan{-}Ngoc Nguyen and
Olivier Poch and
Julie Dawn Thompson},
title = {A comprehensive study of small non-frameshift insertions/deletions
in proteins and prediction of their phenotypic effects by a machine
learning method (KD4i)},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {111},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-111},
doi = {10.1186/1471-2105-15-111},
timestamp = {Wed, 12 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Bermejo-Das-NevesNPT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BielejecLCBRS14,
author = {Filip Bielejec and
Philippe Lemey and
Luiz Carvalho and
Guy Baele and
Andrew Rambaut and
Marc A. Suchard},
title = {{\(\pi\)}BUSS: a parallel {BEAST/BEAGLE} utility for sequence simulation
under complex evolutionary scenarios},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {133},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-133},
doi = {10.1186/1471-2105-15-133},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BielejecLCBRS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BischlerKV14,
author = {Thorsten Bischler and
Matthias Kopf and
Bj{\"{o}}rn Vo{\ss}},
title = {Transcript mapping based on dRNA-seq data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {122},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-122},
doi = {10.1186/1471-2105-15-122},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BischlerKV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BisginLFKXT14,
author = {Halil Bisgin and
Zhichao Liu and
Hong Fang and
Reagan Kelly and
Xiaowei Xu and
Weida Tong},
title = {A phenome-guided drug repositioning through a latent variable model},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {267},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-267},
doi = {10.1186/1471-2105-15-267},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BisginLFKXT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BiswasB14,
author = {Ambarish Biswas and
Chris M. Brown},
title = {Scan for Motifs: a webserver for the analysis of post-transcriptional
regulatory elements in the 3[prime] untranslated regions (3[prime]
UTRs) of mRNAs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {174},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-174},
doi = {10.1186/1471-2105-15-174},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BiswasB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BizrahDGRPNNDYC14,
author = {Mukhtar Bizrah and
Steve C. Dakin and
Li Guo and
Farzana Rahman and
Miles Parnell and
Eduardo Normando and
Shereen Nizari and
Benjamin Davis and
Ahmed Younis and
M. Francesca Cordeiro},
title = {A semi-automated technique for labeling and counting of apoptosing
retinal cells},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {169},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-169},
doi = {10.1186/1471-2105-15-169},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BizrahDGRPNNDYC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoetzerP14,
author = {Marten Boetzer and
Walter Pirovano},
title = {SSPACE-LongRead: scaffolding bacterial draft genomes using long read
sequence information},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {211},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-211},
doi = {10.1186/1471-2105-15-211},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoetzerP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorghtVV14,
author = {Koen Van der Borght and
Geert Verbeke and
Herman van Vlijmen},
title = {Multi-model inference using mixed effects from a linear regression
based genetic algorithm},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {88},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-88},
doi = {10.1186/1471-2105-15-88},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorghtVV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BornelovMK14,
author = {Susanne Bornel{\"{o}}v and
Simon Marillet and
Jan Komorowski},
title = {Ciruvis: a web-based tool for rule networks and interaction detection
using rule-based classifiers},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {139},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-139},
doi = {10.1186/1471-2105-15-139},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BornelovMK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoseWPDBFGMHNKZBG14,
author = {Maitreyee Bose and
Chong Wu and
James S. Pankow and
Ellen W. Demerath and
Jan Bressler and
Myriam Fornage and
Megan L. Grove and
Thomas H. Mosley Jr. and
Chindo Hicks and
Kari North and
Wen Kao and
Yu Zhang and
Eric Boerwinkle and
Weihua Guan},
title = {Evaluation of microarray-based {DNA} methylation measurement using
technical replicates: the Atherosclerosis Risk In Communities {(ARIC)}
Study},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {312},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-312},
doi = {10.1186/1471-2105-15-312},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BoseWPDBFGMHNKZBG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BradleyLMD14,
author = {Barrie S. Bradley and
Joseph C. Loftus and
Clinton J. Mielke and
Valentin Dinu},
title = {Differential expression of microRNAs as predictors of glioblastoma
phenotypes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {21},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-21},
doi = {10.1186/1471-2105-15-21},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BradleyLMD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BraunerGSGOWKM14,
author = {Jan M. Brauner and
Teja W. Groemer and
Armin Stroebel and
Simon Grosse{-}Holz and
Timo Oberstein and
Jens Wiltfang and
Johannes Kornhuber and
Juan Manuel Maler},
title = {Spot quantification in two dimensional gel electrophoresis image analysis:
comparison of different approaches and presentation of a novel compound
fitting algorithm},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {181},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-181},
doi = {10.1186/1471-2105-15-181},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BraunerGSGOWKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BudnikovaHLCLA14,
author = {Marianna Budnikova and
Jeffrey W. Habig and
Daniel Lobo and
Nicolas Cornia and
Michael Levin and
Timothy L. Andersen},
title = {Design of a flexible component gathering algorithm for converting
cell-based models to graph representations for use in evolutionary
search},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {178},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-178},
doi = {10.1186/1471-2105-15-178},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BudnikovaHLCLA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BullaSCMS14,
author = {Ingo Bulla and
Anne{-}Kathrin Schultz and
Christophe Chesneau and
Tanya Mark and
Florin Serea},
title = {A model-based information sharing protocol for profile Hidden Markov
Models used for {HIV-1} recombination detection},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {205},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-205},
doi = {10.1186/1471-2105-15-205},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BullaSCMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BurgtSCW14,
author = {Ate van der Burgt and
Edouard Severing and
J{\'{e}}r{\^{o}}me Collemare and
Pierre J. G. M. de Wit},
title = {Automated alignment-based curation of gene models in filamentous fungi},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {19},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-19},
doi = {10.1186/1471-2105-15-19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BurgtSCW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuschmannZBB14,
author = {Tilo Buschmann and
Rong Zhang and
Douglas E. Brash and
Leonid V. Bystrykh},
title = {Enhancing the detection of barcoded reads in high throughput {DNA}
sequencing data by controlling the false discovery rate},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {264},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-264},
doi = {10.1186/1471-2105-15-264},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BuschmannZBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Busk14,
author = {Peter K. Busk},
title = {A tool for design of primers for microRNA-specific quantitative RT-qPCR},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {29},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-29},
doi = {10.1186/1471-2105-15-29},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Busk14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ByrdPMCTMSBCJ14,
author = {Allyson L. Byrd and
Joseph F. Perez{-}Rogers and
Solaiappan Manimaran and
Eduardo Castro{-}Nallar and
Ian Toma and
Tim McCaffrey and
Marc Siegel and
Gary Benson and
Keith A. Crandall and
William Johnson},
title = {Clinical PathoScope: rapid alignment and filtration for accurate pathogen
identification in clinical samples using unassembled sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {262},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-262},
doi = {10.1186/1471-2105-15-262},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ByrdPMCTMSBCJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaiRNA14,
author = {Hongmin Cai and
Peiying Ruan and
Michael Kwok{-}Po Ng and
Tatsuya Akutsu},
title = {Feature weight estimation for gene selection: a local hyperlinear
learning approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {70},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-70},
doi = {10.1186/1471-2105-15-70},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaiRNA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CantarelWMZMR14,
author = {Brandi L. Cantarel and
Daniel Weaver and
Nathan McNeill and
Jianhua Zhang and
Aaron J. Mackey and
Justin T. Reese},
title = {{BAYSIC:} a Bayesian method for combining sets of genome variants
with improved specificity and sensitivity},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {104},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-104},
doi = {10.1186/1471-2105-15-104},
timestamp = {Mon, 02 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CantarelWMZMR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoLS14,
author = {Chang{-}Chang Cao and
Cheng Li and
Xiao Sun},
title = {Quantitative group testing-based overlapping pool sequencing to identify
rare variant carriers},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {195},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-195},
doi = {10.1186/1471-2105-15-195},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoLS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoWWC14,
author = {Renzhi Cao and
Zheng Wang and
Yiheng Wang and
Jianlin Cheng},
title = {{SMOQ:} a tool for predicting the absolute residue-specific quality
of a single protein model with support vector machines},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {120},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-120},
doi = {10.1186/1471-2105-15-120},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoWWC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarsonSMBJHF14,
author = {Andrew R. Carson and
Erin N. Smith and
Hiroko Matsui and
Sigrid K. Br{\ae}kkan and
Kristen Jepsen and
John{-}Bjarne Hansen and
Kelly A. Frazer},
title = {Effective filtering strategies to improve data quality from population-based
whole exome sequencing studies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {125},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-125},
doi = {10.1186/1471-2105-15-125},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CarsonSMBJHF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CastellaniMWLAOS14,
author = {Christina A. Castellani and
Melkaye G. Melka and
Andrea E. Wishart and
M. Elizabeth Locke and
Zain Awamleh and
Richard L. O'Reilly and
Shiva M. Singh},
title = {Biological relevance of {CNV} calling methods using familial relatedness
including monozygotic twins},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {114},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-114},
doi = {10.1186/1471-2105-15-114},
timestamp = {Sun, 13 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CastellaniMWLAOS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChakrabartyP14,
author = {Broto Chakrabarty and
Nita Parekh},
title = {Identifying tandem Ankyrin repeats in protein structures},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6599},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0440-9},
doi = {10.1186/S12859-014-0440-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChakrabartyP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChalfounMDSPB14,
author = {Joe Chalfoun and
Michael Majurski and
Alden Dima and
Christina H. Stuelten and
Adele P. Peskin and
Mary Brady},
title = {FogBank: a single cell segmentation across multiple cell lines and
image modalities},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6598},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0431-x},
doi = {10.1186/S12859-014-0431-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChalfounMDSPB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChampeimontC14,
author = {Rapha{\"{e}}l Champeimont and
Alessandra Carbone},
title = {SPoRE: a mathematical model to predict double strand breaks and axis
protein sites in meiosis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {391},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0391-1},
doi = {10.1186/S12859-014-0391-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChampeimontC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangCYC14,
author = {Chia{-}Jung Chang and
Pei{-}Lung Chen and
Wei{-}Shiung Yang and
Kun{-}Mao Chao},
title = {A fault-tolerant method for {HLA} typing with PacBio data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {296},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-296},
doi = {10.1186/1471-2105-15-296},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangCYC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangGT14,
author = {Young Hwan Chang and
Joe W. Gray and
Claire J. Tomlin},
title = {Exact reconstruction of gene regulatory networks using compressive
sensing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {400},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0400-4},
doi = {10.1186/S12859-014-0400-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangGT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChaturvediGBWM14,
author = {Nimisha Chaturvedi and
Jelle J. Goeman and
Judith M. Boer and
Wessel N. van Wieringen and
Ren{\'{e}}e X. de Menezes},
title = {A test for comparing two groups of samples when analyzing multiple
omics profiles},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {236},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-236},
doi = {10.1186/1471-2105-15-236},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChaturvediGBWM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenHL14,
author = {Zhongxue Chen and
Hanwen Huang and
Qingzhong Liu},
title = {Detecting differentially methylated loci for multiple treatments based
on high-throughput methylation data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {142},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-142},
doi = {10.1186/1471-2105-15-142},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenHL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenWTWACYTTC14,
author = {Kun{-}Huang Chen and
Kung{-}Jeng Wang and
Min{-}Lung Tsai and
Kung{-}Min Wang and
Angelia Melani{-}Adrian and
Wei{-}Chung Cheng and
Tzu{-}Sen Yang and
Nai{-}Chia Teng and
Kuo{-}Pin Tan and
Ku{-}Shang Chang},
title = {Gene selection for cancer identification: a decision tree model empowered
by particle swarm optimization algorithm},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {49},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-49},
doi = {10.1186/1471-2105-15-49},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenWTWACYTTC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengDFLT14,
author = {Chun{-}Pei Cheng and
Christopher M. DeBoever and
Kelly A. Frazer and
Yu{-}Cheng Liu and
Vincent S. Tseng},
title = {MiningABs: mining associated biomarkers across multi-connected gene
expression datasets},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {173},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-173},
doi = {10.1186/1471-2105-15-173},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengDFLT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChibaU14,
author = {Hirokazu Chiba and
Ikuo Uchiyama},
title = {Improvement of domain-level ortholog clustering by optimizing domain-specific
sum-of-pairs score},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {148},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-148},
doi = {10.1186/1471-2105-15-148},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChibaU14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CiliaTALP14,
author = {Elisa Cilia and
Stefano Teso and
Sergio Ammendola and
Tom Lenaerts and
Andrea Passerini},
title = {Predicting virus mutations through statistical relational learning},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {309},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-309},
doi = {10.1186/1471-2105-15-309},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CiliaTALP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ClarkATG14,
author = {Greg W. Clark and
Sharon H. Ackerman and
Elisabeth R. Tillier and
Domenico L. Gatti},
title = {Multidimensional mutual information methods for the analysis of covariation
in multiple sequence alignments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {157},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-157},
doi = {10.1186/1471-2105-15-157},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ClarkATG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ClarkHFKCDM14,
author = {Neil R. Clark and
Kevin S. Hu and
Axel S. Feldmann and
Yan Kou and
Edward Y. Chen and
Qiaonan Duan and
Avi Ma'ayan},
title = {The characteristic direction: a geometrical approach to identify differentially
expressed genes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {79},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-79},
doi = {10.1186/1471-2105-15-79},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ClarkHFKCDM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ColeKKAFMWGPSM14,
author = {Charles Cole and
Konstantinos Krampis and
Konstantinos Karagiannis and
Jonas S. Almeida and
William J. Faison and
Mona Motwani and
Quan Wan and
Anton Golikov and
Yang Pan and
Vahan Simonyan and
Raja Mazumder},
title = {Non-synonymous variations in cancer and their effects on the human
proteome: workflow for {NGS} data biocuration and proteome-wide analysis
of {TCGA} data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {28},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-28},
doi = {10.1186/1471-2105-15-28},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ColeKKAFMWGPSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuiCLZ14,
author = {Feng Cui and
Linlin Chen and
Peter R. LoVerso and
Victor B. Zhurkin},
title = {Prediction of nucleosome rotational positioning in yeast and human
genomes based on sequence-dependent {DNA} anisotropy},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {313},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-313},
doi = {10.1186/1471-2105-15-313},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CuiCLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Curry14,
author = {Edward W. J. Curry},
title = {A framework for generalized subspace pattern mining in high-dimensional
datasets},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {355},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0355-5},
doi = {10.1186/S12859-014-0355-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Curry14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DAddarioKBR14,
author = {Marianna D'Addario and
Dominik Kopczynski and
J{\"{o}}rg Ingo Baumbach and
Sven Rahmann},
title = {A modular computational framework for automated peak extraction from
ion mobility spectra},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {25},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-25},
doi = {10.1186/1471-2105-15-25},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DAddarioKBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DanderBSPHT14,
author = {Andreas Dander and
Matthias Baldauf and
Michael Sperk and
Stephan Pabinger and
Benjamin Hiltpolt and
Zlatko Trajanoski},
title = {Personalized Oncology Suite: integrating next-generation sequencing
data and whole-slide bioimages},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {306},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-306},
doi = {10.1186/1471-2105-15-306},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DanderBSPHT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DangVGHL14,
author = {Cuong Cao Dang and
Le Sy Vinh and
Olivier Gascuel and
Bart Hazes and
Si Quang Le},
title = {FastMG: a simple, fast, and accurate maximum likelihood procedure
to estimate amino acid replacement rate matrices from large data sets},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {341},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-341},
doi = {10.1186/1471-2105-15-341},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DangVGHL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DasMRFCBGA14,
author = {Debanu Das and
Alexey G. Murzin and
Neil D. Rawlings and
Robert D. Finn and
Penelope Coggill and
Alex Bateman and
Adam Godzik and
L. Aravind},
title = {Structure and computational analysis of a novel protein with metallopeptidase-like
and circularly permuted winged-helix-turn-helix domains reveals a
possible role in modified polysaccharide biosynthesis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {75},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-75},
doi = {10.1186/1471-2105-15-75},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DasMRFCBGA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeLC14,
author = {Jaydeep De and
Huiqi Li and
Li Cheng},
title = {Tracing retinal vessel trees by transductive inference},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {20},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-20},
doi = {10.1186/1471-2105-15-20},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DeLC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DembeleK14,
author = {Doulaye Demb{\'{e}}l{\'{e}} and
Philippe Kastner},
title = {Fold change rank ordering statistics: a new method for detecting differentially
expressed genes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {14},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-14},
doi = {10.1186/1471-2105-15-14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DembeleK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DengC14,
author = {Xin Deng and
Jianlin Cheng},
title = {Enhancing HMM-based protein profile-profile alignment with structural
features and evolutionary coupling information},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {252},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-252},
doi = {10.1186/1471-2105-15-252},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DengC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DengT14,
author = {Zhimin Deng and
Tianhai Tian},
title = {A continuous optimization approach for inferring parameters in mathematical
models of regulatory networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {256},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-256},
doi = {10.1186/1471-2105-15-256},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DengT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeveciCT14,
author = {Mehmet Deveci and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Amanda E. Toland},
title = {mrSNP: Software to detect {SNP} effects on microRNA binding},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {73},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-73},
doi = {10.1186/1471-2105-15-73},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DeveciCT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiPPMARMFSLCQ14,
author = {Lia Di and
Pedro E. Pagan and
Daniel Packer and
Che L. Martin and
Saymon Akther and
Girish Ramrattan and
Emmanuel F. Mongodin and
Claire M. Fraser and
Steven E. Schutzer and
Benjamin J. Luft and
Sherwood R. Casjens and
Wei{-}Gang Qiu},
title = {BorreliaBase: a phylogeny-centered browser of Borrelia genomes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {233},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-233},
doi = {10.1186/1471-2105-15-233},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DiPPMARMFSLCQ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiezPMH14,
author = {Mikel Diez and
V{\'{\i}}ctor Petuya and
Luis Alfonso Mart{\'{\i}}nez{-}Cruz and
Alfonso Hern{\'{a}}ndez},
title = {Insights into mechanism kinematics for protein motion simulation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {184},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-184},
doi = {10.1186/1471-2105-15-184},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DiezPMH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DingWHM14,
author = {Hao Ding and
Chao Wang and
Kun Huang and
Raghu Machiraju},
title = {iGPSe: {A} visual analytic system for integrative genomic based cancer
patient stratification},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {203},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-203},
doi = {10.1186/1471-2105-15-203},
timestamp = {Mon, 22 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DingWHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DinklaEBSSWK14,
author = {Kasper Dinkla and
Mohammed El{-}Kebir and
Cristina{-}Iulia Bucur and
Marco Siderius and
Martine J. Smit and
Michel A. Westenberg and
Gunnar W. Klau},
title = {eXamine: Exploring annotated modules in networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {201},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-201},
doi = {10.1186/1471-2105-15-201},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DinklaEBSSWK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoddamaniKKASV14,
author = {Dadakhalandar Doddamani and
A. V. S. K. Mohan Katta and
Aamir W. Khan and
Gaurav Agarwal and
Trushar M. Shah and
Rajeev K. Varshney},
title = {CicArMiSatDB: the chickpea microsatellite database},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {212},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-212},
doi = {10.1186/1471-2105-15-212},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DoddamaniKKASV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DolzhenkoS14,
author = {Egor Dolzhenko and
Andrew D. Smith},
title = {Using beta-binomial regression for high-precision differential methylation
analysis in multifactor whole-genome bisulfite sequencing experiments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {215},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-215},
doi = {10.1186/1471-2105-15-215},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DolzhenkoS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DongWDGWWSW14,
author = {Zhijie Dong and
Keyu Wang and
Truong Khanh Linh Dang and
Mehmet G{\"{u}}ltas and
Marlon Welter and
Torsten Wierschin and
Mario Stanke and
Stephan Waack},
title = {CRF-based models of protein surfaces improve protein-protein interaction
site predictions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {277},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-277},
doi = {10.1186/1471-2105-15-277},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DongWDGWWSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuarteCBERS14,
author = {Jose L. Gualdr{\'{o}}n Duarte and
Rodolfo J. C. Cantet and
Ronald O. Bates and
Catherine W. Ernst and
Nancy E. Raney and
Juan P. Steibel},
title = {Rapid screening for phenotype-genotype associations by linear transformations
of genomic evaluations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {246},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-246},
doi = {10.1186/1471-2105-15-246},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DuarteCBERS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuffyDCS14,
author = {Fergal J. Duffy and
Marc Devocelle and
David R. Croucher and
Denis C. Shields},
title = {Computational survey of peptides derived from disulphide-bonded protein
loops that may serve as mediators of protein-protein interactions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {305},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-305},
doi = {10.1186/1471-2105-15-305},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DuffyDCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DundarAYR14,
author = {Murat Dundar and
Ferit Akova and
Halid Ziya Yerebakan and
Bartek Rajwa},
title = {A Non-parametric Bayesian Model for Joint Cell Clustering and Cluster
Matching: Identification of Anomalous Sample Phenotypes with Random
Effects},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {314},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-314},
doi = {10.1186/1471-2105-15-314},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DundarAYR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DurrantA14,
author = {Jacob D. Durrant and
Rommie E. Amaro},
title = {WebChem Viewer: a tool for the easy dissemination of chemical and
structural data sets},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {159},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-159},
doi = {10.1186/1471-2105-15-159},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DurrantA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EgeaHCVMDBS14,
author = {Jose A. Egea and
David Henriques and
Thomas Cokelaer and
Alejandro Fern{\'{a}}ndez Villaverde and
Aidan MacNamara and
Diana{-}Patricia Danciu and
Julio R. Banga and
Julio Saez{-}Rodriguez},
title = {{MEIGO:} an open-source software suite based on metaheuristics for
global optimization in systems biology and bioinformatics},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {136},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-136},
doi = {10.1186/1471-2105-15-136},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EgeaHCVMDBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ElhaikPT14,
author = {Eran Elhaik and
Matteo Pellegrini and
Tatiana V. Tatarinova},
title = {Gene expression and nucleotide composition are associated with genic
methylation level in Oryza sativa},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {23},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-23},
doi = {10.1186/1471-2105-15-23},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ElhaikPT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EnglishSR14,
author = {Adam C. English and
William J. Salerno and
Jeffrey G. Reid},
title = {PBHoney: Identifying Genomic Variants via Long-Read Discordance and
Interrupted Mapping},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {180},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-180},
doi = {10.1186/1471-2105-15-180},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EnglishSR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EsmaielbeikiN14,
author = {Reyhaneh Esmaielbeiki and
Jean{-}Christophe Nebel},
title = {Scoring docking conformations using predicted protein interfaces},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {171},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-171},
doi = {10.1186/1471-2105-15-171},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EsmaielbeikiN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EvansPPPPWH14,
author = {Mark C. Evans and
Pham Phung and
Agnes C. Paquet and
Anvi Parikh and
Christos J. Petropoulos and
Terri Wrin and
Mojgan Haddad},
title = {Predicting {HIV-1} broadly neutralizing antibody epitope networks
using neutralization titers and a novel computational method},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {77},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-77},
doi = {10.1186/1471-2105-15-77},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EvansPPPPWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FalgreenLBKSNJDB14,
author = {Steffen Falgreen and
Maria Bach Laursen and
Julie St{\o}ve B{\o}dker and
Malene Krag Kjeldsen and
Alexander Schmitz and
Mette Nyegaard and
Hans Erik Johnsen and
Karen Dybk{\ae}r and
Martin B{\o}gsted},
title = {Exposure time independent summary statistics for assessment of drug
dependent cell line growth inhibition},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {168},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-168},
doi = {10.1186/1471-2105-15-168},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FalgreenLBKSNJDB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FanZCNC14,
author = {Xian Fan and
Wanding Zhou and
Zechen Chong and
Luay Nakhleh and
Ken Chen},
title = {Towards accurate characterization of clonal heterogeneity based on
structural variation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {299},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-299},
doi = {10.1186/1471-2105-15-299},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FanZCNC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FeigelmanTM14,
author = {Justin Feigelman and
Fabian J. Theis and
Carsten Marr},
title = {{MCA:} Multiresolution Correlation Analysis, a graphical tool for
subpopulation identification in single-cell gene expression data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {240},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-240},
doi = {10.1186/1471-2105-15-240},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FeigelmanTM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FerdosiKWLG14,
author = {Mohammad H. Ferdosi and
Brian P. Kinghorn and
Julius H. J. Van der Werf and
Seung Hwan Lee and
Cedric Gondro},
title = {hsphase: an {R} package for pedigree reconstruction, detection of
recombination events, phasing and imputation of half-sib family groups},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {172},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-172},
doi = {10.1186/1471-2105-15-172},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FerdosiKWLG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FerrariM14,
author = {Luna De Ferrari and
John B. O. Mitchell},
title = {From sequence to enzyme mechanism using multi-label machine learning},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {150},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-150},
doi = {10.1186/1471-2105-15-150},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FerrariM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FerreiraRR14,
author = {Miguel Ferreira and
Nuno Roma and
Lu{\'{\i}}s M. S. Russo},
title = {Cache-Oblivious parallel {SIMD} Viterbi decoding for sequence search
in {HMMER}},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {165},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-165},
doi = {10.1186/1471-2105-15-165},
timestamp = {Mon, 16 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FerreiraRR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FersiniMA14,
author = {Elisabetta Fersini and
Enza Messina and
Francesco Archetti},
title = {A p-Median approach for predicting drug response in tumour cells},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {353},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0353-7},
doi = {10.1186/S12859-014-0353-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FersiniMA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FillouxMPFKRMP14,
author = {Cyril Filloux and
C{\'{e}}dric Meersseman and
Romain Philippe and
Lionel Forestier and
Christophe Klopp and
Dominique Rocha and
Abderrahman Maftah and
Daniel Petit},
title = {An integrative method to normalize RNA-Seq data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {188},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-188},
doi = {10.1186/1471-2105-15-188},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FillouxMPFKRMP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FitzpatrickMY14,
author = {Martin A. Fitzpatrick and
Catherine M. McGrath and
Stephen P. Young},
title = {Pathomx: an interactive workflow-based tool for the analysis of metabolomic
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {396},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0396-9},
doi = {10.1186/S12859-014-0396-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FitzpatrickMY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlandroisLD14,
author = {Jean{-}Pierre Flandrois and
G{\'{e}}rard Lina and
Oana Dumitrescu},
title = {{MUBII-TB-DB:} a database of mutations associated with antibiotic
resistance in Mycobacterium tuberculosis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {107},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-107},
doi = {10.1186/1471-2105-15-107},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FlandroisLD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FortinoSATG14,
author = {Vittorio Fortino and
Olli{-}Pekka Smolander and
Petri Auvinen and
Roberto Tagliaferri and
Dario Greco},
title = {Transcriptome dynamics-based operon prediction in prokaryotes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {145},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-145},
doi = {10.1186/1471-2105-15-145},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FortinoSATG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FoxSHLB14,
author = {Natalie S. Fox and
Maud H. W. Starmans and
Syed Haider and
Philippe Lambin and
Paul C. Boutros},
title = {Ensemble analyses improve signatures of tumour hypoxia and reveal
inter-platform differences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {170},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-170},
doi = {10.1186/1471-2105-15-170},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FoxSHLB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FredrikssonHW14,
author = {Nils Fredriksson and
Malte Hermansson and
Britt{-}Marie Wil{\'{e}}n},
title = {Impact of {T-RFLP} data analysis choices on assessments of microbial
community structure and dynamics},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {360},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0360-8},
doi = {10.1186/S12859-014-0360-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FredrikssonHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FredrikssonHW14a,
author = {Nils Fredriksson and
Malte Hermansson and
Britt{-}Marie Wil{\'{e}}n},
title = {Tools for {T-RFLP} data analysis using Excel},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {361},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0361-7},
doi = {10.1186/S12859-014-0361-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FredrikssonHW14a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FunkBGRBCHV14,
author = {Christopher S. Funk and
William A. Baumgartner Jr. and
Benjamin Garcia and
Christophe Roeder and
Michael Bada and
K. Bretonnel Cohen and
Lawrence E. Hunter and
Karin Verspoor},
title = {Large-scale biomedical concept recognition: an evaluation of current
automatic annotators and their parameters},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {59},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-59},
doi = {10.1186/1471-2105-15-59},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FunkBGRBCHV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GanWSSHMAZ14,
author = {Zhuohui Gan and
Jianwu Wang and
Nathan Salomonis and
Jennifer C. Stowe and
Gabriel G. Haddad and
Andrew D. McCulloch and
Ilkay Altintas and
Alexander C. Zambon},
title = {{MAAMD:} a workflow to standardize meta-analyses and comparison of
affymetrix microarray data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {69},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-69},
doi = {10.1186/1471-2105-15-69},
timestamp = {Fri, 30 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GanWSSHMAZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Garcia-EtxebarriaGC14,
author = {Koldo Garcia{-}Etxebarria and
Marc Garcia{-}Garcer{\`{a}} and
Francesc Calafell},
title = {Consistency of metagenomic assignment programs in simulated and real
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {90},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-90},
doi = {10.1186/1471-2105-15-90},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Garcia-EtxebarriaGC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GardnerS14,
author = {Shea N. Gardner and
Tom Slezak},
title = {Simulate{\_}PCR for amplicon prediction and annotation from multiplex,
degenerate primers and probes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {237},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-237},
doi = {10.1186/1471-2105-15-237},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GardnerS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GasiorK14,
author = {Pawel Gasior and
Malgorzata Kotulska},
title = {{FISH} Amyloid - a new method for finding amyloidogenic segments in
proteins based on site specific co-occurence of aminoacids},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {54},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-54},
doi = {10.1186/1471-2105-15-54},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GasiorK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeorgeC14,
author = {Nysia I. George and
Ching{-}Wei Chang},
title = {{DAFS:} a data-adaptive flag method for RNA-sequencing data to differentiate
genes with low and high expression},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {92},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-92},
doi = {10.1186/1471-2105-15-92},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeorgeC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GerdesBP14,
author = {Lars Gerdes and
Ulrich Busch and
Sven Pecoraro},
title = {A statistical approach to quantification of genetically modified organisms
{(GMO)} using frequency distributions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {407},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0407-x},
doi = {10.1186/S12859-014-0407-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GerdesBP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GertzHDATS14,
author = {Edward Michael Gertz and
Tero Hiekkalinna and
S{\'{e}}bastien Le Digabel and
Charles Audet and
Joseph D. Terwilliger and
Alejandro A. Sch{\"{a}}ffer},
title = {{PSEUDOMARKER} 2.0: efficient computation of likelihoods using {NOMAD}},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {47},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-47},
doi = {10.1186/1471-2105-15-47},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GertzHDATS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GillaniARC14,
author = {Zeeshan Gillani and
Muhammad Akash and
Md. Matiur Rahaman and
Ming Chen},
title = {CompareSVM: supervised, Support Vector Machine {(SVM)} inference of
gene regularity networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {395},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0395-x},
doi = {10.1186/S12859-014-0395-X},
timestamp = {Fri, 06 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GillaniARC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GillyEMGQAMHELPWCA14,
author = {Arthur Gilly and
Mathilde Etcheverry and
Mohammed{-}Amin Madoui and
Julie Guy and
Leandro Quadrana and
Adriana Alberti and
Antoine Martin and
Tony Heitkam and
Stefan Engelen and
Karine Labadie and
Jeremie Le Pen and
Patrick Wincker and
Vincent Colot and
Jean{-}Marc Aury},
title = {TE-Tracker: systematic identification of transposition events through
whole-genome resequencing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {377},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0377-z},
doi = {10.1186/S12859-014-0377-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GillyEMGQAMHELPWCA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GnanavelMRMSB14,
author = {Mutharasu Gnanavel and
Prachi Mehrotra and
Ramaswamy Rakshambikai and
Juliette Martin and
Narayanaswamy Srinivasan and
Ramachandra M. Bhaskara},
title = {{CLAP:} {A} web-server for automatic classification of proteins with
special reference to multi-domain proteins},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {343},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-343},
doi = {10.1186/1471-2105-15-343},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GnanavelMRMSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GniewekKKG14,
author = {Pawel Gniewek and
Andrzej Kolinski and
Andrzej Kloczkowski and
Dominik Gront},
title = {BioShell-Threading: versatile Monte Carlo package for protein 3D threading},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {22},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-22},
doi = {10.1186/1471-2105-15-22},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GniewekKKG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GomezHB14,
author = {Jose A. Gomez and
Kai H{\"{o}}ffner and
Paul I. Barton},
title = {DFBAlab: a fast and reliable {MATLAB} code for dynamic flux balance
analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {409},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0409-8},
doi = {10.1186/S12859-014-0409-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GomezHB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GotohMN14,
author = {Osamu Gotoh and
Mariko Morita and
David R. Nelson},
title = {Assessment and refinement of eukaryotic gene structure prediction
with gene-structure-aware multiple protein sequence alignment},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {189},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-189},
doi = {10.1186/1471-2105-15-189},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GotohMN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GouZWWZQZTYWHLSC14,
author = {Jianwei Gou and
Yang Zhao and
Yongyue Wei and
Chen Wu and
Ruyang Zhang and
Yongyong Qiu and
Ping Zeng and
Wen Tan and
Dianke Yu and
Tangchun Wu and
Zhibin Hu and
Dongxin Lin and
Hongbing Shen and
Feng Chen},
title = {Stability {SCAD:} a powerful approach to detect interactions in large-scale
genomic study},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {62},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-62},
doi = {10.1186/1471-2105-15-62},
timestamp = {Thu, 11 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GouZWWZQZTYWHLSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GovindZHWFAWKCMBB14,
author = {Shaylan K. Govind and
Amin Zia and
Pablo H. Hennings{-}Yeomans and
John D. Watson and
Michael Fraser and
Catalina V. Anghel and
Alexander Wyatt and
Theodorus van der Kwast and
Colin C. Collins and
John D. McPherson and
Robert G. Bristow and
Paul C. Boutros},
title = {ShatterProof: operational detection and quantification of chromothripsis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {78},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-78},
doi = {10.1186/1471-2105-15-78},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GovindZHWFAWKCMBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrimesJ14,
author = {Susan M. Grimes and
Hanlee P. Ji},
title = {MendeLIMS: a web-based laboratory information management system for
clinical genome sequencing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {290},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-290},
doi = {10.1186/1471-2105-15-290},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrimesJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrimonprezCBCFM14,
author = {Quentin Grimonprez and
Alain Celisse and
Samuel Blanck and
Meyling Cheok and
Martin Figeac and
Guillemette Marot},
title = {MPAgenomics: an {R} package for multi-patient analysis of genomic
markers},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {394},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0394-y},
doi = {10.1186/S12859-014-0394-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GrimonprezCBCFM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrossSS14,
author = {Arnd Gross and
Sibylle Schirm and
Markus Scholz},
title = {Ycasd - a tool for capturing and scaling data from graphical representations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {219},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-219},
doi = {10.1186/1471-2105-15-219},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrossSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuillotC14,
author = {Elsa G. Guillot and
Murray P. Cox},
title = {{SMARTPOP:} inferring the impact of social dynamics on genetic diversity
through high speed simulations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {175},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-175},
doi = {10.1186/1471-2105-15-175},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuillotC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Gul-MohammedAAGB14,
author = {Jaza Gul{-}Mohammed and
Ignacio Arganda{-}Carreras and
Philippe Andrey and
Vincent Galy and
Thomas Boudier},
title = {A generic classification-based method for segmentation of nuclei in
3D images of early embryos},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {9},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-9},
doi = {10.1186/1471-2105-15-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Gul-MohammedAAGB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GultasDHJMWW14,
author = {Mehmet G{\"{u}}ltas and
G{\"{u}}ncel D{\"{u}}zg{\"{u}}n and
Sebastian Herzog and
Sven Joachim J{\"{a}}ger and
Cornelia Meckbach and
Edgar Wingender and
Stephan Waack},
title = {Quantum Coupled Mutation Finder: Predicting functionally or structurally
important sites in proteins using quantum Jensen-Shannon divergence
and {CUDA} programming},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {96},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-96},
doi = {10.1186/1471-2105-15-96},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GultasDHJMWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GundersonH14,
author = {Tina Gunderson and
Yen{-}Yi Ho},
title = {An efficient algorithm to explore liquid association on a genome-wide
scale},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {371},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0371-5},
doi = {10.1186/S12859-014-0371-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GundersonH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuoYYP14,
author = {Xuan Guo and
Meng Yu and
Ning Yu and
Yi Pan},
title = {Cloud computing for detecting high-order genome-wide epistatic interaction
via dynamic clustering},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {102},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-102},
doi = {10.1186/1471-2105-15-102},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuoYYP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuoZLSSSPS14,
author = {Yan Guo and
Shilin Zhao and
Brian D. Lehmann and
Quanhu Sheng and
Timothy M. Shaver and
Thomas Stricker and
Jennifer A. Pietenpol and
Yu Shyr},
title = {Detection of internal exon deletion with exon Del},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {332},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-332},
doi = {10.1186/1471-2105-15-332},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuoZLSSSPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HabibiHNS14,
author = {Narjeskhatoon Habibi and
Siti Zaiton Mohd Hashim and
Alireza Norouzi and
Mohammed Samian},
title = {A review of machine learning methods to predict the solubility of
overexpressed recombinant proteins in Escherichia coli},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {134},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-134},
doi = {10.1186/1471-2105-15-134},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HabibiHNS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HannaZ14,
author = {Eileen Marie Hanna and
Nazar M. Zaki},
title = {Detecting protein complexes in protein interaction networks using
a ranking algorithm with a refined merging procedure},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {204},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-204},
doi = {10.1186/1471-2105-15-204},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HannaZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HansonWRGOMDBCKMBC14,
author = {Brett Hanson and
Charles Westin and
Mario Rosa and
Alexander Grier and
Mikhail Osipovitch and
Madolyn L. MacDonald and
Greg Dodge and
Paule M. Boli and
Cyprian W. Corwin and
Haeja Kessler and
Talia McKay and
Herbert J. Bernstein and
Paul A. Craig},
title = {Estimation of protein function using template-based alignment of enzyme
active sites},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {87},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-87},
doi = {10.1186/1471-2105-15-87},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HansonWRGOMDBCKMBC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Hazes14,
author = {Bart Hazes},
title = {CDSbank: taxonomy-aware extraction, selection, renaming and formatting
of protein-coding {DNA} or amino acid sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {61},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-61},
doi = {10.1186/1471-2105-15-61},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Hazes14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HenriquesM14,
author = {Rui Henriques and
Sara C. Madeira},
title = {BicSPAM: flexible biclustering using sequential patterns},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {130},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-130},
doi = {10.1186/1471-2105-15-130},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HenriquesM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeskesEB14,
author = {Tom Heskes and
Rob Eisinga and
Rainer Breitling},
title = {A fast algorithm for determining bounds and accurate approximate p-values
of the rank product statistic for replicate experiments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {367},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0367-1},
doi = {10.1186/S12859-014-0367-1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeskesEB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HobbsLTE14,
author = {Christopher K. Hobbs and
Michelle Leung and
Herbert H. Tsang and
H. Ebhardt},
title = {{CIG-P:} Circular Interaction Graph for Proteomics},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {344},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-344},
doi = {10.1186/1471-2105-15-344},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HobbsLTE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HrabeG14,
author = {Thomas Hrabe and
Adam Godzik},
title = {ConSole: using modularity of contact maps to locate Solenoid domains
in protein structures},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {119},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-119},
doi = {10.1186/1471-2105-15-119},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HrabeG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HristoskovaBT14,
author = {Anna Hristoskova and
Veselka Boeva and
Elena Tsiporkova},
title = {A Formal Concept Analysis Approach to Consensus Clustering of Multi-Experiment
Expression Data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {151},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-151},
doi = {10.1186/1471-2105-15-151},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HristoskovaBT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuLLLY14,
author = {Yuh{-}Jyh Hu and
Shun{-}Chien Lin and
Yu{-}Lung Lin and
Kuan{-}Hui Lin and
Shun{-}Ning You},
title = {A meta-learning approach for B-cell conformational epitope prediction},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {378},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0378-y},
doi = {10.1186/S12859-014-0378-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuLLLY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuLT14,
author = {Fei Hu and
Yu Lin and
Jijun Tang},
title = {{MLGO:} phylogeny reconstruction and ancestral inference from gene-order
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {354},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0354-6},
doi = {10.1186/S12859-014-0354-6},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuLT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangV14,
author = {Jiabin Huang and
Bj{\"{o}}rn Vo{\ss}},
title = {Analysing RNA-kinetics based on folding space abstraction},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {60},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-60},
doi = {10.1186/1471-2105-15-60},
timestamp = {Sat, 24 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangYCB14,
author = {Yu{-}Ting Huang and
Jiue{-}in Yang and
Marek Chrobak and
James Borneman},
title = {{PRISE2:} Software for designing sequence-selective {PCR} primers
and probes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {317},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-317},
doi = {10.1186/1471-2105-15-317},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangYCB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HudsonPKMTR14,
author = {Nicholas J. Hudson and
Laercio R. Porto{-}Neto and
James Kijas and
Sean McWilliam and
Ryan J. Taft and
Antonio Reverter},
title = {Information compression exploits patterns of genome composition to
discriminate populations and highlight regions of evolutionary interest},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {66},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-66},
doi = {10.1186/1471-2105-15-66},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HudsonPKMTR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuntleyHABCDDFHKLLLMSAWM14,
author = {Rachael P. Huntley and
Midori A. Harris and
Yasmin Alam{-}Faruque and
Judith A. Blake and
Seth Carbon and
Heiko Dietze and
Emily C. Dimmer and
Rebecca E. Foulger and
David P. Hill and
Varsha K. Khodiyar and
Antonia Lock and
Jane Lomax and
Ruth C. Lovering and
Prudence Mutowo{-}Meullenet and
Tony Sawford and
Kimberly Van Auken and
Valerie Wood and
Christopher J. Mungall},
title = {A method for increasing expressivity of Gene Ontology annotations
using a compositional approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {155},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-155},
doi = {10.1186/1471-2105-15-155},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuntleyHABCDDFHKLLLMSAWM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuseWVSMES14,
author = {Susan M. Huse and
David B. Mark Welch and
Andy Voorhis and
Anna Shipunova and
Hilary G. Morrison and
A. Murat Eren and
Mitchell L. Sogin},
title = {{VAMPS:} a website for visualization and analysis of microbial population
structures},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {41},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-41},
doi = {10.1186/1471-2105-15-41},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuseWVSMES14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IbrahimJCL14,
author = {Maysson Al{-}Haj Ibrahim and
Sabah Jassim and
Michael Anthony Cawthorne and
Kenneth Langlands},
title = {A {MATLAB} tool for pathway enrichment using a topology-based pathway
regulation score},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {358},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0358-2},
doi = {10.1186/S12859-014-0358-2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IbrahimJCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IerselKLS14,
author = {Leo van Iersel and
Steven Kelk and
Nela Lekic and
C{\'{e}}line Scornavacca},
title = {A practical approximation algorithm for solving massive instances
of hybridization number for binary and nonbinary trees},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {127},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-127},
doi = {10.1186/1471-2105-15-127},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IerselKLS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IlieHMS14,
author = {Lucian Ilie and
Bahlul Haider and
Michael Molnar and
Roberto Solis{-}Oba},
title = {{SAGE:} String-overlap Assembly of GEnomes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {302},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-302},
doi = {10.1186/1471-2105-15-302},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IlieHMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JabbariC14,
author = {Hosna Jabbari and
Anne Condon},
title = {A fast and robust iterative algorithm for prediction of {RNA} pseudoknotted
secondary structures},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {147},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-147},
doi = {10.1186/1471-2105-15-147},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JabbariC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JacobsGC14,
author = {Bart K. M. Jacobs and
Els Goetghebeur and
Lieven Clement},
title = {Impact of variance components on reliability of absolute quantification
using digital {PCR}},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {283},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-283},
doi = {10.1186/1471-2105-15-283},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JacobsGC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JagerPN14,
author = {G{\"{u}}nter J{\"{a}}ger and
Alexander Peltzer and
Kay Nieselt},
title = {inPHAP: Interactive visualization of genotype and phased haplotype
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {200},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-200},
doi = {10.1186/1471-2105-15-200},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JagerPN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JandaPBBKSKM14,
author = {Jan{-}Oliver Janda and
Ajmal Popal and
Jochen Bauer and
Markus Busch and
Michael Klocke and
Wolfgang Spitzer and
J{\"{o}}rg Keller and
Rainer Merkl},
title = {H2rs: Deducing evolutionary and functionally important residue positions
by means of an entropy and similarity based analysis of multiple sequence
alignments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {118},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-118},
doi = {10.1186/1471-2105-15-118},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JandaPBBKSKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JayaseelanS14,
author = {Kalai Vanii Jayaseelan and
Christoph Steinbeck},
title = {Building blocks for automated elucidation of metabolites: natural
product-likeness for candidate ranking},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {234},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-234},
doi = {10.1186/1471-2105-15-234},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JayaseelanS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiJYLZ14,
author = {Junzhong Ji and
Lang Jiao and
Cuicui Yang and
Jia Wei Lv and
Aidong Zhang},
title = {{MAE-FMD:} Multi-agent evolutionary method for functional module detection
in protein-protein interaction networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {325},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-325},
doi = {10.1186/1471-2105-15-325},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiJYLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangETWGS14,
author = {Li Jiang and
Stefan M. Edwards and
Bo Thomsen and
Christopher T. Workman and
Bernt Guldbrandtsen and
Peter S{\o}rensen},
title = {A random set scoring model for prioritization of disease candidate
genes using protein complexes and data-mining of GeneRIF, {OMIM} and
PubMed records},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {315},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-315},
doi = {10.1186/1471-2105-15-315},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangETWGS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangLDZ14,
author = {Hongshan Jiang and
Rong Lei and
Shou{-}Wei Ding and
Shuifang Zhu},
title = {Skewer: a fast and accurate adapter trimmer for next-generation sequencing
paired-end reads},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {182},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-182},
doi = {10.1186/1471-2105-15-182},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangLDZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiaoVDSM14,
author = {Wei Jiao and
Shankar Vembu and
Amit G. Deshwar and
Lincoln Stein and
Quaid Morris},
title = {Inferring clonal evolution of tumors from single nucleotide somatic
mutations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {35},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-35},
doi = {10.1186/1471-2105-15-35},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiaoVDSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JonesMWWH14,
author = {Michael E. Jones and
George C. Mayne and
Tingting Wang and
David I. Watson and
Damian J. Hussey},
title = {A fixed-point algorithm for estimating amplification efficiency from
a polymerase chain reaction dilution series},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {372},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0372-4},
doi = {10.1186/S12859-014-0372-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JonesMWWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Joshi14,
author = {Anagha Joshi},
title = {Mammalian transcriptional hotspots are enriched for tissue specific
enhancers near cell type specific highly expressed genes and are predicted
to act as transcriptional activator hubs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6591},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0412-0},
doi = {10.1186/S12859-014-0412-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Joshi14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KajanHKMR14,
author = {L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Thomas A. Hopf and
Mat{\'{u}} Kala and
Debora S. Marks and
Burkhard Rost},
title = {FreeContact: fast and free software for protein contact prediction
from residue co-evolution},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {85},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-85},
doi = {10.1186/1471-2105-15-85},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KajanHKMR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KalariNBODBNTBDMSTAK14,
author = {Krishna R. Kalari and
Asha A. Nair and
Jaysheel D. Bhavsar and
Daniel R. O'Brien and
Jaime I. D{\'{a}}vila and
Matthew A. Bockol and
Jinfu J. Nie and
Xiaojia Tang and
Saurabh Baheti and
Jay B. Doughty and
Sumit Middha and
Hugues Sicotte and
E. Aubrey Thompson and
Yan W. Asmann and
Jean{-}Pierre A. Kocher},
title = {MAP-RSeq: Mayo Analysis Pipeline for {RNA} sequencing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {224},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-224},
doi = {10.1186/1471-2105-15-224},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KalariNBODBNTBDMSTAK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KanePSR14,
author = {Michael J. Kane and
Natalie Price and
Matthew Scotch and
Peter Rabinowitz},
title = {Comparison of {ARIMA} and Random Forest time series models for prediction
of avian influenza {H5N1} outbreaks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {276},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-276},
doi = {10.1186/1471-2105-15-276},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KanePSR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangCCRLK14,
author = {Hyunjung Kang and
Ikjung Choi and
Sooyoung Cho and
Daeun Ryu and
Sanghyuk Lee and
Wan Kyu Kim},
title = {gsGator: an integrated web platform for cross-species gene set analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {13},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-13},
doi = {10.1186/1471-2105-15-13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KangCCRLK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangSBAMK14,
author = {Ning Kang and
Bharat Singh and
Quoc{-}Chinh Bui and
Zubair Afzal and
Erik M. van Mulligen and
Jan A. Kors},
title = {Knowledge-based extraction of adverse drug events from biomedical
text},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {64},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-64},
doi = {10.1186/1471-2105-15-64},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KangSBAMK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangasNM14,
author = {Joshua D. Kangas and
Armaghan W. Naik and
Robert F. Murphy},
title = {Efficient discovery of responses of proteins to compounds using active
learning},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {143},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-143},
doi = {10.1186/1471-2105-15-143},
timestamp = {Wed, 12 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KangasNM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KasaharaK14,
author = {Kota Kasahara and
Kengo Kinoshita},
title = {{GIANT:} pattern analysis of molecular interactions in 3D structures
of protein-small ligand complexes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {12},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-12},
doi = {10.1186/1471-2105-15-12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KasaharaK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KatzP14,
author = {Joshua P. Katz and
James M. Pipas},
title = {SummonChimera infers integrated viral genomes with nucleotide precision
from {NGS} data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {348},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0348-4},
doi = {10.1186/S12859-014-0348-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KatzP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KehrTHR14,
author = {Birte Kehr and
Kathrin Trappe and
Manuel Holtgrewe and
Knut Reinert},
title = {Genome alignment with graph data structures: a comparison},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {99},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-99},
doi = {10.1186/1471-2105-15-99},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KehrTHR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KerpedjievFLK14,
author = {Peter Kerpedjiev and
Jes Frellsen and
Stinus Lindgreen and
Anders Krogh},
title = {Adaptable probabilistic mapping of short reads using position specific
scoring matrices},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {100},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-100},
doi = {10.1186/1471-2105-15-100},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KerpedjievFLK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhafifCBR14,
author = {Mehdi Khafif and
Ludovic Cottret and
Claudine Balagu{\'{e}} and
Sylvain Raffaele},
title = {Identification and phylogenetic analyses of VASt, an uncharacterized
protein domain associated with lipid-binding domains in Eukaryotes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {222},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-222},
doi = {10.1186/1471-2105-15-222},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KhafifCBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhuranaVRTNMICK14,
author = {Rimpi Khurana and
Vinod Kumar Verma and
Abdul Rawoof and
Shrish Tiwari and
Rekha A. Nair and
Ganesh Mahidhara and
Mohammed M. Idris and
Alan R. Clarke and
Lekha Dinesh Kumar},
title = {OncomiRdbB: a comprehensive database of microRNAs and their targets
in breast cancer},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {15},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-15},
doi = {10.1186/1471-2105-15-15},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KhuranaVRTNMICK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KianiK14,
author = {Narsis Aftab Kiani and
Lars Kaderali},
title = {Dynamic Probabilistic Threshold Networks to Infer Signaling Pathways
from Time-Course Perturbation Data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {250},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-250},
doi = {10.1186/1471-2105-15-250},
timestamp = {Thu, 06 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KianiK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KillcoyneS14,
author = {Sarah A. Killcoyne and
Antonio del Sol},
title = {{FIGG:} Simulating populations of whole genome sequences for heterogeneous
data analyses},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {149},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-149},
doi = {10.1186/1471-2105-15-149},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KillcoyneS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimH14,
author = {Tane Kim and
Weilong Hao},
title = {DiscML: an {R} package for estimating evolutionary rates of discrete
characters using maximum likelihood},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {320},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-320},
doi = {10.1186/1471-2105-15-320},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimJS14,
author = {Su Yeon Kim and
Laurent Jacob and
Terence P. Speed},
title = {Combining calls from multiple somatic mutation-callers},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {154},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-154},
doi = {10.1186/1471-2105-15-154},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimJS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimLX14,
author = {Jongik Kim and
Chen Li and
Xiaohui Xie},
title = {Improving read mapping using additional prefix grams},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {42},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-42},
doi = {10.1186/1471-2105-15-42},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimLX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimS14,
author = {Kyung In Kim and
Richard Simon},
title = {Using single cell sequencing data to model the evolutionary history
of a tumor},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {27},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-27},
doi = {10.1186/1471-2105-15-27},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimSBSNP14,
author = {Yohan Kim and
John Sidney and
S{\o}ren Buus and
Alessandro Sette and
Morten Nielsen and
Bjoern Peters},
title = {Dataset size and composition impact the reliability of performance
benchmarks for peptide-MHC binding predictions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {241},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-241},
doi = {10.1186/1471-2105-15-241},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimSBSNP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KlosterKB14,
author = {Michael Kloster and
Gerhard Kauer and
B{\'{a}}nk Beszteri},
title = {{SHERPA:} an image segmentation and outline feature extraction tool
for diatoms and other objects},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {218},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-218},
doi = {10.1186/1471-2105-15-218},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KlosterKB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KnightID14,
author = {Jason M. Knight and
Ivan Ivanov and
Edward R. Dougherty},
title = {{MCMC} implementation of the optimal Bayesian classifier for non-Gaussian
models: model-based RNA-Seq classification},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {401},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0401-3},
doi = {10.1186/S12859-014-0401-3},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KnightID14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KolesarPVBSH14,
author = {Ivan Koles{\'{a}}r and
J{\'{u}}lius Parulek and
Ivan Viola and
Stefan Bruckner and
Anne{-}Kristin Stavrum and
Helwig Hauser},
title = {Interactively Illustrating Polymerization using Three-level Model
Fusion},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {345},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-345},
doi = {10.1186/1471-2105-15-345},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KolesarPVBSH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KorenTHPP14,
author = {Sergey Koren and
Todd J. Treangen and
Christopher Michael Hill and
Mihai Pop and
Adam M. Phillippy},
title = {Automated ensemble assembly and validation of microbial genomes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {126},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-126},
doi = {10.1186/1471-2105-15-126},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KorenTHPP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KorneliussenAN14,
author = {Thorfinn Korneliussen and
Anders Albrechtsen and
Rasmus Nielsen},
title = {{ANGSD:} Analysis of Next Generation Sequencing Data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {356},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0356-4},
doi = {10.1186/S12859-014-0356-4},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KorneliussenAN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrackeK14,
author = {Frauke Kracke and
Jens O. Kr{\"{o}}mer},
title = {Identifying target processes for microbial electrosynthesis by elementary
mode analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6590},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0410-2},
doi = {10.1186/S12859-014-0410-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrackeK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KramerCR14,
author = {Andrei Kramer and
Ben Calderhead and
Nicole Radde},
title = {Hamiltonian Monte Carlo methods for efficient parameter estimation
in steady state dynamical systems},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {253},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-253},
doi = {10.1186/1471-2105-15-253},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KramerCR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuckMGWM14,
author = {Patrick K{\"{u}}ck and
Sandra A. Meid and
Christian Gro{\ss} and
Johann{-}Wolfgang W{\"{a}}gele and
Bernhard Misof},
title = {AliGROOVE - visualization of heterogeneous sequence divergence within
multiple sequence alignments and detection of inflated branch support},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {294},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-294},
doi = {10.1186/1471-2105-15-294},
timestamp = {Fri, 21 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KuckMGWM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Kuhn14,
author = {Alexandre Kuhn},
title = {Correspondence regarding Zhong et al., {BMC} Bioinformatics 2013 Mar
7;14: 89},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {347},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0347-5},
doi = {10.1186/S12859-014-0347-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Kuhn14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KukicMTWVP14,
author = {Predrag Kukic and
Claudio Mirabello and
Giuseppe Tradigo and
Ian Walsh and
Pierangelo Veltri and
Gianluca Pollastri},
title = {Toward an accurate prediction of inter-residue distances in proteins
using 2D recursive neural networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-6},
doi = {10.1186/1471-2105-15-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KukicMTWVP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Kursa14,
author = {Miron B. Kursa},
title = {Robustness of Random Forest-based gene selection methods},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {8},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-8},
doi = {10.1186/1471-2105-15-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Kursa14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LammersPVG14,
author = {Youri Lammers and
Tamara Peelen and
Rutger A. Vos and
Barbara Gravendeel},
title = {The {HTS} barcode checker pipeline, a tool for automated detection
of illegally traded species from high-throughput sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {44},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-44},
doi = {10.1186/1471-2105-15-44},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LammersPVG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LangenkamperGN14,
author = {Daniel Langenk{\"{a}}mper and
Alexander Goesmann and
Tim W. Nattkemper},
title = {{AKE} - the Accelerated k-mer Exploration web-tool for rapid taxonomic
classification and visualization},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {384},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0384-0},
doi = {10.1186/S12859-014-0384-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LangenkamperGN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LassmannHDCH14,
author = {Timo Lassmann and
Akira Hasegawa and
Carsten O. Daub and
Piero Carninci and
Yoshihide Hayashizaki},
title = {{MOIRAI:} {A} Compact Workflow System for {CAGE} Analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {144},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-144},
doi = {10.1186/1471-2105-15-144},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LassmannHDCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Latendresse14,
author = {Mario Latendresse},
title = {Efficiently Gap-Filling Reaction Networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {225},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-225},
doi = {10.1186/1471-2105-15-225},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Latendresse14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeD14,
author = {Preston V. Lee and
Valentin Dinu},
title = {BitTorious: global controlled genomics data publication, research
and archiving via BitTorrent extensions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6601},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0424-9},
doi = {10.1186/S12859-014-0424-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeS14,
author = {Hsiao Ping Lee and
Tzu{-}Fang Sheu},
title = {An algorithm of discovering signatures from {DNA} databases on a computer
cluster},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {339},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-339},
doi = {10.1186/1471-2105-15-339},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiCXC14,
author = {You Li and
Hao Chi and
Leihao Xia and
Xiaowen Chu},
title = {Accelerating the scoring module of mass spectrometry-based peptide
identification using GPUs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {121},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-121},
doi = {10.1186/1471-2105-15-121},
timestamp = {Thu, 28 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiCXC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiFM14,
author = {Wentian Li and
Jan Freudenberg and
Pedro Miramontes},
title = {Diminishing Return for Increased Mappability with Longer Sequencing
Reads: Implications of the k-mer Distributions in the Human Genome},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {2},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-2},
doi = {10.1186/1471-2105-15-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiFM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiG14,
author = {Yihan Li and
Debashis Ghosh},
title = {A Two-Step Hierarchical Hypothesis Set Testing Framework, with Applications
to Gene Expression Data on Ordered Categories},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {108},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-108},
doi = {10.1186/1471-2105-15-108},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiG14a,
author = {Yihan Li and
Debashis Ghosh},
title = {Meta-Analysis Based on Weighted Ordered P-values for Genomic Data
with Heterogeneity},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {226},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-226},
doi = {10.1186/1471-2105-15-226},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiG14a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiLNW14,
author = {Hongjian Li and
Kwong{-}Sak Leung and
Takanori Nakane and
Man Hon Wong},
title = {iview: an interactive WebGL visualizer for protein-ligand complex},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {56},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-56},
doi = {10.1186/1471-2105-15-56},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiLNW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiLWB14,
author = {Hongjian Li and
Kwong{-}Sak Leung and
Man Hon Wong and
Pedro J. Ballester},
title = {Substituting random forest for multiple linear regression improves
binding affinity prediction of scoring functions: Cyscore as a case
study},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {291},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-291},
doi = {10.1186/1471-2105-15-291},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiLWB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiWHZ14,
author = {Zhiyi Li and
Xiaowei Wu and
Bin He and
Liqing Zhang},
title = {Vindel: a simple pipeline for checking indel redundancy},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {359},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0359-1},
doi = {10.1186/S12859-014-0359-1},
timestamp = {Mon, 19 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiWHZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiYXLHZZY14,
author = {Liqi Li and
Sanjiu Yu and
Weidong Xiao and
Yongsheng Li and
Lan Huang and
Xiaoqi Zheng and
Shiwen Zhou and
Hua Yang},
title = {Sequence-based identification of recombination spots using pseudo
nucleic acid representation and recursive feature extraction by linear
kernel {SVM}},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {340},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-340},
doi = {10.1186/1471-2105-15-340},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiYXLHZZY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZJ14,
author = {Rongjian Li and
Wenlu Zhang and
Shuiwang Ji},
title = {Automated identification of cell-type-specific genes in the mouse
brain by image computing of expression patterns},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {209},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-209},
doi = {10.1186/1471-2105-15-209},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZZ14,
author = {Aimin Li and
Junying Zhang and
Zhongyin Zhou},
title = {{PLEK:} a tool for predicting long non-coding RNAs and messenger RNAs
based on an improved k-mer scheme},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {311},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-311},
doi = {10.1186/1471-2105-15-311},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LianGP14,
author = {Yao Lian and
Meng Ge and
Xian{-}Ming Pan},
title = {{EPMLR:} Sequence-based linear B-cell epitope prediction method using
multiple linear regression},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {414},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0414-y},
doi = {10.1186/S12859-014-0414-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LianGP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiaoLKCBKST14,
author = {Serena G. Liao and
Yan Lin and
Dongwan D. Kang and
Divay Chandra and
Jessica Bon and
Naftali Kaminski and
Frank C. Sciurba and
George C. Tseng},
title = {Missing value imputation in high-dimensional phenomic data: imputable
or not, and how?},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {346},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0346-6},
doi = {10.1186/S12859-014-0346-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiaoLKCBKST14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LingP14,
author = {Maurice H. T. Ling and
Chueh{-}Loo Poh},
title = {A predictor for predicting Escherichia coli transcriptome and the
effects of gene perturbations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {140},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-140},
doi = {10.1186/1471-2105-15-140},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LingP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuDYIR14,
author = {Ruijie Liu and
Zhiyin Dai and
Meredith Yeager and
Rafael A. Irizarry and
Matthew E. Ritchie},
title = {{KRLMM:} an adaptive genotype calling method for common and low frequency
variants},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {158},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-158},
doi = {10.1186/1471-2105-15-158},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuDYIR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuGHHM14,
author = {Yiyi Liu and
Quanquan Gu and
Jack P. Hou and
Jiawei Han and
Jian Ma},
title = {A network-assisted co-clustering algorithm to discover cancer subtypes
based on gene expression},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {37},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-37},
doi = {10.1186/1471-2105-15-37},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuGHHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuHKWL14,
author = {Qian Liu and
Steven C. H. Hoi and
Chee Keong Kwoh and
Limsoon Wong and
Jinyan Li},
title = {Integrating water exclusion theory into {\(\beta\)}contacts to predict
binding free energy changes and binding hot spots},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {57},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-57},
doi = {10.1186/1471-2105-15-57},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuHKWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuHLZLWSXZ14,
author = {Xuewu Liu and
Yuxiao Huang and
Jiao Liang and
Shuai Zhang and
Yinghui Li and
Jun Wang and
Yan Shen and
Zhikai Xu and
Ya Zhao},
title = {Computational prediction of protein interactions related to the invasion
of erythrocytes by malarial parasites},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {393},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0393-z},
doi = {10.1186/S12859-014-0393-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuHLZLWSXZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuLD14,
author = {Ruolin Liu and
Ann E. Loraine and
Julie A. Dickerson},
title = {Comparisons of computational methods for differential alternative
splicing detection using RNA-seq in plant systems},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {364},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0364-4},
doi = {10.1186/S12859-014-0364-4},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuLD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuLDYZ14,
author = {Xiang Liu and
Tao Lu and
Yongchao Dou and
Bin Yu and
Chi Zhang},
title = {Identification of {RNA} silencing components in soybean and sorghum},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {4},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-4},
doi = {10.1186/1471-2105-15-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuLDYZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuP14,
author = {Zhifa Liu and
Stan Pounds},
title = {An {R} Package that Automatically Collects and Archives Details for
Reproducible Computing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {138},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-138},
doi = {10.1186/1471-2105-15-138},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuS14,
author = {Rey{-}Long Liu and
Chia Chun Shih},
title = {Identification of highly related references about gene-disease association},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {286},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-286},
doi = {10.1186/1471-2105-15-286},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuSTWR14,
author = {Ruifeng Liu and
Narender Singh and
Gregory J. Tawa and
Anders Wallqvist and
Jaques Reifman},
title = {Exploiting large-scale drug-protein interaction information for computational
drug repurposing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {210},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-210},
doi = {10.1186/1471-2105-15-210},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuSTWR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWS14,
author = {Xinyu Liu and
Yupeng Wang and
T. N. Sriram},
title = {Determination of sample size for a multi-class classifier based on
single-nucleotide polymorphisms: a volume under the surface approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {190},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-190},
doi = {10.1186/1471-2105-15-190},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWZ14,
author = {Mingming Liu and
Layne T. Watson and
Liqing Zhang},
title = {Quantitative prediction of the effect of genetic variation using hidden
Markov models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-5},
doi = {10.1186/1471-2105-15-5},
timestamp = {Fri, 20 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWZM14,
author = {Zhi{-}Ping Liu and
Hulin Wu and
Jian Zhu and
Hongyu Miao},
title = {Systematic identification of transcriptional and post-transcriptional
regulations in human respiratory epithelial cells during influenza
{A} virus infection},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {336},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-336},
doi = {10.1186/1471-2105-15-336},
timestamp = {Tue, 09 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWZM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiviB14,
author = {Carmen Maria Livi and
Enrico Blanzieri},
title = {Protein-specific prediction of mRNA binding using {RNA} sequences,
binding motifs and predicted secondary structures},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {123},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-123},
doi = {10.1186/1471-2105-15-123},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiviB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoC14,
author = {Chien{-}Chi Lo and
Patrick S. G. Chain},
title = {Rapid evaluation and quality control of next generation sequencing
data with FaQCs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {366},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0366-2},
doi = {10.1186/S12859-014-0366-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LoC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LongPTYVHK14,
author = {Jeffrey R. Long and
Vanessa Pittet and
Brett Trost and
Qingxiang Yan and
David Vickers and
Monique Haakensen and
Anthony J. Kusalik},
title = {Equivalent input produces different output in the UniFrac significance
test},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {278},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-278},
doi = {10.1186/1471-2105-15-278},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LongPTYVHK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopesSC14,
author = {Ivani de Oliveira Negr{\~{a}}o Lopes and
Alexander Schliep and
Andr{\'{e}} Carlos Ponce de Leon Ferreira de Carvalho},
title = {The discriminant power of {RNA} features for pre-miRNA recognition},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {124},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-124},
doi = {10.1186/1471-2105-15-124},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopesSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuCHC14,
author = {Chin Lung Lu and
Kun{-}Tze Chen and
Shih{-}Yuan Huang and
Hsien{-}Tai Chiu},
title = {{CAR:} contig assembly of prokaryotic draft genomes using rearrangements},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {381},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0381-3},
doi = {10.1186/S12859-014-0381-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuCHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Lucas-LledoVAC14,
author = {Jos{\'{e}} Ignacio Lucas{-}Lled{\'{o}} and
David Vicente{-}Salvador and
Cristina Aguado and
Mario C{\'{a}}ceres},
title = {Population genetic analysis of bi-allelic structural variants from
low-coverage sequence data with an expectation-maximization algorithm},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {163},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-163},
doi = {10.1186/1471-2105-15-163},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Lucas-LledoVAC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LucasMC14,
author = {Joseph M. E. X. Lucas and
Matthieu Muffato and
Hugues Roest Crollius},
title = {PhylDiag: identifying complex synteny blocks that include tandem duplications
using phylogenetic gene trees},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {268},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-268},
doi = {10.1186/1471-2105-15-268},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LucasMC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuoGLBCW14,
author = {Wei Luo and
Marcus Gallagher and
Bill Loveday and
Susan Ballantyne and
Jason P. Connor and
Janet Wiles},
title = {Detecting contaminated birthdates using generalized additive models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {185},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-185},
doi = {10.1186/1471-2105-15-185},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuoGLBCW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LutzSBKS14,
author = {Benjamin Lutz and
Claude Sinner and
Stefan Bozic and
Ivan Kondov and
Alexander Schug},
title = {Native structure-based modeling and simulation of biomolecular systems
per mouse click},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {292},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-292},
doi = {10.1186/1471-2105-15-292},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LutzSBKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LyrasM14,
author = {Dimitrios P. Lyras and
Dirk Metzler},
title = {ReformAlign: improved multiple sequence alignments using a profile-based
meta-alignment approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {265},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-265},
doi = {10.1186/1471-2105-15-265},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LyrasM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MahmoudHPGKML14,
author = {Osama Mahmoud and
Andrew Harrison and
Aris Perperoglou and
Asma Gul and
Zardad Khan and
Metodi V. Metodiev and
Berthold Lausen},
title = {A feature selection method for classification within functional genomics
experiments based on the proportional overlapping score},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {274},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-274},
doi = {10.1186/1471-2105-15-274},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MahmoudHPGKML14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MajiSKDG14,
author = {Ranjan Kumar Maji and
Arijita Sarkar and
Sunirmal Khatua and
Subhasis Dasgupta and
Zhumur Ghosh},
title = {{PVT:} an efficient computational procedure to speed up next-generation
sequence analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {167},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-167},
doi = {10.1186/1471-2105-15-167},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MajiSKDG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MalmSSB14,
author = {Erik K. Malm and
Vaibhav Srivastava and
Gustav Sundqvist and
Vincent Bulone},
title = {{APP:} an Automated Proteomics Pipeline for the analysis of mass spectrometry
data based on multiple open access tools},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6600},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0441-8},
doi = {10.1186/S12859-014-0441-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MalmSSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ManarySFBCBMWW14,
author = {Micah J. Manary and
Suriya S. Singhakul and
Erika L. Flannery and
Selina E. R. Bopp and
Victoria C. Corey and
Andrew Bright and
Case W. McNamara and
John R. Walker and
Elizabeth A. Winzeler},
title = {Identification of pathogen genomic variants through an integrated
pipeline},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {63},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-63},
doi = {10.1186/1471-2105-15-63},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ManarySFBCBMWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MartinSTXHP14,
author = {Florian Martin and
Alain Sewer and
Marja Talikka and
Yang Xiang and
Julia Hoeng and
Manuel C. Peitsch},
title = {Quantification of biological network perturbations for mechanistic
insight and diagnostics using two-layer causal models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {238},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-238},
doi = {10.1186/1471-2105-15-238},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MartinSTXHP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MasinoDDWSKPRW14,
author = {Aaron J. Masino and
Elizabeth T. Dechene and
Matthew C. Dulik and
Alisha Wilkens and
Nancy B. Spinner and
Ian D. Krantz and
Jeffrey W. Pennington and
Peter N. Robinson and
Peter S. White},
title = {Clinical phenotype-based gene prioritization: an initial study using
semantic similarity and the human phenotype ontology},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {248},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-248},
doi = {10.1186/1471-2105-15-248},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MasinoDDWSKPRW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Mata-MunguiaETFVGVCV14,
author = {Carlos Mata{-}Mungu{\'{\i}}a and
Martha Escoto{-}Delgadillo and
Blanca Torres{-}Mendoza and
Mario Flores{-}Soto and
Mildred V{\'{a}}zquez{-}Torres and
Francisco G{\'{a}}lvez{-}Gastelum and
Arturo Viniegra{-}Osorio and
Marcelo Castillero{-}Manzano and
Eduardo V{\'{a}}zquez{-}Valls},
title = {Natural polymorphisms and unusual mutations in {HIV-1} protease with
potential antiretroviral resistance: a bioinformatic analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {72},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-72},
doi = {10.1186/1471-2105-15-72},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Mata-MunguiaETFVGVCV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McCorrisonVSFLM14,
author = {Jamison M. McCorrison and
Pratap Venepally and
Indresh Singh and
Derrick E. Fouts and
Roger S. Lasken and
Barbara A. Meth{\'{e}}},
title = {NeatFreq: reference-free data reduction and coverage normalization
for De Novo sequence assembly},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {357},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0357-3},
doi = {10.1186/S12859-014-0357-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/McCorrisonVSFLM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeherSRW14,
author = {Prabina Kumar Meher and
Tanmaya Kumar Sahu and
Atmakuri Ramakrishna Rao and
Sant Wahi},
title = {A statistical approach for 5{\({'}\)} splice site prediction
using short sequence motifs and without encoding sequence data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {362},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0362-6},
doi = {10.1186/S12859-014-0362-6},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeherSRW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeiZ14,
author = {Suyu Mei and
Hao Zhu},
title = {Computational reconstruction of proteome-wide protein interaction
networks between {HTLV} retroviruses and Homo sapiens},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {245},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-245},
doi = {10.1186/1471-2105-15-245},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeiZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MekterovicMM14,
author = {Igor Mekterovic and
Darko Mekterovic and
Zeljka Maglica},
title = {BactImAS: a platform for processing and analysis of bacterial time-lapse
microscopy movies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {251},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-251},
doi = {10.1186/1471-2105-15-251},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MekterovicMM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MemieviKCZDWR14,
author = {Vesna Memievi and
Kamal Kumar and
Li Cheng and
Nela Zavaljevski and
David DeShazer and
Anders Wallqvist and
Jaques Reifman},
title = {DBSecSys: a database of Burkholderia mallei secretion systems},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {244},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-244},
doi = {10.1186/1471-2105-15-244},
timestamp = {Fri, 22 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MemieviKCZDWR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengKCG14,
author = {Chen Meng and
Bernhard K{\"{u}}ster and
Aed{\'{\i}}n C. Culhane and
Amin Moghaddas Gholami},
title = {A multivariate approach to the integration of multi-omics datasets},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {162},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-162},
doi = {10.1186/1471-2105-15-162},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengKCG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengLSL14,
author = {Jun Meng and
Dong Liu and
Chao Sun and
Yushi Luan},
title = {Prediction of plant pre-microRNAs and their microRNAs in genome-scale
sequences using structure-sequence features and support vector machine},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6595},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0423-x},
doi = {10.1186/S12859-014-0423-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengLSL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeridGA14,
author = {Simon Kebede Merid and
Daria Goranskaya and
Andrey Alexeyenko},
title = {Distinguishing between driver and passenger mutations in individual
cancer genomes by network enrichment analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {308},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-308},
doi = {10.1186/1471-2105-15-308},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MeridGA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeynertAFT14,
author = {Alison M. Meynert and
Morad Ansari and
David R. FitzPatrick and
Martin S. Taylor},
title = {Variant detection sensitivity and biases in whole genome and exome
sequencing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {247},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-247},
doi = {10.1186/1471-2105-15-247},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MeynertAFT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MichelAB14,
author = {Audrey M. Michel and
Dmitry E. Andreev and
Pavel V. Baranov},
title = {Computational approach for calculating the probability of eukaryotic
translation initiation from ribo-seq data that takes into account
leaky scanning},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {380},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0380-4},
doi = {10.1186/S12859-014-0380-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MichelAB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MiloneSLKC14,
author = {Diego H. Milone and
Georgina Stegmayer and
Mariana G. Lopez and
Laura Kamenetzky and
Fernando Carrari},
title = {Improving clustering with metabolic pathway data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {101},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-101},
doi = {10.1186/1471-2105-15-101},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MiloneSLKC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MiokWWJNBSSW14,
author = {Viktorian Miok and
Saskia M. Wilting and
Mark A. van de Wiel and
Annelieke Jaspers and
Paula I. van Noort and
Ruud H. Brakenhoff and
Peter J. F. Snijders and
Renske D. M. Steenbergen and
Wessel N. van Wieringen},
title = {tigaR: integrative significance analysis of temporal differential
gene expression induced by genomic abnormalities},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {327},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-327},
doi = {10.1186/1471-2105-15-327},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MiokWWJNBSSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MirelG14,
author = {Barbara Mirel and
Carsten G{\"{o}}rg},
title = {Scientists' sense making when hypothesizing about disease mechanisms
from expression data and their needs for visualization support},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {117},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-117},
doi = {10.1186/1471-2105-15-117},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MirelG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MohamadlouSF14,
author = {Hamid Mohamadlou and
Joseph C. Shope and
Nicholas S. Flann},
title = {Maximizing Kolmogorov Complexity for accurate and robust bright field
cell segmentation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {32},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-32},
doi = {10.1186/1471-2105-15-32},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MohamadlouSF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoniL14,
author = {Mohammad Ali Moni and
Pietro Li{\`{o}}},
title = {Network-based analysis of comorbidities risk during an infection:
{SARS} and {HIV} case studies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {333},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-333},
doi = {10.1186/1471-2105-15-333},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MoniL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorissetNZGLe14,
author = {Dany Morisset and
Petra Kralj Novak and
Darko Zupanic and
Kristina Gruden and
Nada Lavrac and
Jana Zel},
title = {GMOseek: a user friendly tool for optimized {GMO} testing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {258},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-258},
doi = {10.1186/1471-2105-15-258},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MorissetNZGLe14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MuellnerDGKUSBCN14,
author = {Markus K. Muellner and
Gerhard D{\"{u}}rnberger and
Florian Ganglberger and
Claudia Kerzendorfer and
Iris Z. Uras and
Andreas Schoenegger and
Klaudia Bagienski and
Jacques Colinge and
Sebastian M. B. Nijman},
title = {{TOPS:} a versatile software tool for statistical analysis and visualization
of combinatorial gene-gene and gene-drug interaction screens},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {98},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-98},
doi = {10.1186/1471-2105-15-98},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MuellnerDGKUSBCN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MurakamiM14,
author = {Yoichi Murakami and
Kenji Mizuguchi},
title = {Homology-based prediction of interactions between proteins using Averaged
One-Dependence Estimators},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {213},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-213},
doi = {10.1186/1471-2105-15-213},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MurakamiM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MuraliPF14,
author = {Thilakam Murali and
Svetlana Pacifico and
Russell L. Finley Jr.},
title = {Integrating the interactome and the transcriptome of Drosophila},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {177},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-177},
doi = {10.1186/1471-2105-15-177},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MuraliPF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NaganoLEH14,
author = {Soshichiro Nagano and
Ting{-}Yu Lin and
Jyotheeswara Edula and
Jonathan Heddle},
title = {Unique features of apicoplast {DNA} gyrases from Toxoplasma gondii
and Plasmodium falciparum},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {416},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0416-9},
doi = {10.1186/S12859-014-0416-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NaganoLEH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NairLMAGSBM14,
author = {Nishanth Ulhas Nair and
Yu Lin and
Ana Manasovska and
Jelena Antic and
Paulina Grnarova and
Avinash Das Sahu and
Philipp Bucher and
Bernard M. E. Moret},
title = {Study of cell differentiation by phylogenetic analysis using histone
modification data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {269},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-269},
doi = {10.1186/1471-2105-15-269},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NairLMAGSBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NakagomeSTYHM14,
author = {Mariko Nakagome and
Elena Solovieva and
Akira Takahashi and
Hiroshi Yasue and
Hirohiko Hirochika and
Akio Miyao},
title = {Transposon Insertion Finder {(TIF):} a novel program for detection
of de novo transpositions of transposable elements},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {71},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-71},
doi = {10.1186/1471-2105-15-71},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NakagomeSTYHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NakaoTSSKNM14,
author = {Megumi Nakao and
Shintaro Takemoto and
Tadao Sugiura and
Kazuaki Sawada and
Ryosuke Kawakami and
Tomomi Nemoto and
Tetsuya Matsuda},
title = {Interactive visual exploration of overlapping similar structures for
three-dimensional microscope images},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {415},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0415-x},
doi = {10.1186/S12859-014-0415-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NakaoTSSKNM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NaquindTS14,
author = {Delphine Naquin and
Yves d'Aubenton{-}Carafa and
Claude Thermes and
Maud Silvain},
title = {{CIRCUS:} a package for Circos display of structural genome variations
from paired-end and mate-pair sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {198},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-198},
doi = {10.1186/1471-2105-15-198},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NaquindTS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NarzoCLH14,
author = {Antonio Di Narzo and
Haoxiang Cheng and
Jianwei Lu and
Ke Hao},
title = {Meta-eQTL: a tool set for flexible eQTL meta-analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {392},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0392-0},
doi = {10.1186/S12859-014-0392-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NarzoCLH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NettlingTBG14,
author = {Martin Nettling and
Nils Thieme and
Andreas Both and
Ivo Grosse},
title = {{DRUMS:} Disk Repository with Update Management and Select option
for high throughput sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {38},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-38},
doi = {10.1186/1471-2105-15-38},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NettlingTBG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NeumannKHS14,
author = {Ralf Stefan Neumann and
Surendra Kumar and
Thomas Hendricus Haverkamp and
Kamran Shalchian{-}Tabrizi},
title = {BLASTGrabber: a bioinformatic tool for visualization, analysis and
sequence selection of massive {BLAST} data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {128},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-128},
doi = {10.1186/1471-2105-15-128},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NeumannKHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NguyenMYOIBA14,
author = {Tung T. Nguyen and
John S. A. Mattick and
Qian Yang and
Mehmet A. Orman and
Marianthi G. Ierapetritou and
Francois Berthiaume and
Ioannis P. Androulakis},
title = {Bioinformatics analysis of transcriptional regulation of circadian
genes in rat liver},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {83},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-83},
doi = {10.1186/1471-2105-15-83},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NguyenMYOIBA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NicolaeR14,
author = {Marius Nicolae and
Sanguthevar Rajasekaran},
title = {Efficient Sequential and Parallel Algorithms for Planted Motif Search},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {34},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-34},
doi = {10.1186/1471-2105-15-34},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NicolaeR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NigatuMH14,
author = {Dawit Nigatu and
Attiya Mahmood and
Werner Henkel},
title = {The Empirical Codon Mutation Matrix as a Communication Channel},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {80},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-80},
doi = {10.1186/1471-2105-15-80},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NigatuMH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NingZYWZLWL14,
author = {Shangwei Ning and
Zuxianglan Zhao and
Jingrun Ye and
Peng Wang and
Hui Zhi and
Ronghong Li and
Tingting Wang and
Xia Li},
title = {LincSNP: a database of linking disease-associated SNPs to human large
intergenic non-coding RNAs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {152},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-152},
doi = {10.1186/1471-2105-15-152},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NingZYWZLWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NoronhaVR14,
author = {Alberto Noronha and
Paulo Vila{\c{c}}a and
Miguel Rocha},
title = {An integrated network visualization framework towards metabolic engineering
applications},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6594},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0420-0},
doi = {10.1186/S12859-014-0420-0},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NoronhaVR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NygardRCNBSTCH14,
author = {St{\aa}le Nyg{\aa}rd and
Trond Reitan and
Trevor Clancy and
Vegard Nygaard and
Johannes Bj{\o}rnstad and
Biljana Skrbic and
Theis T{\o}nnessen and
Geir Christensen and
Eivind Hovig},
title = {Identifying pathogenic processes by integrating microarray data with
prior knowledge},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {115},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-115},
doi = {10.1186/1471-2105-15-115},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NygardRCNBSTCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OakleyANPCCL14,
author = {Todd H. Oakley and
Markos A. Alexandrou and
Roger Ngo and
M. Sabrina Pankey and
Celia K. Churchill and
William Chen and
Karl B. Lopker},
title = {Osiris: accessible and reproducible phylogenetic and phylogenomic
analyses within the Galaxy workflow management system},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {230},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-230},
doi = {10.1186/1471-2105-15-230},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OakleyANPCCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OliveiraADCLL14,
author = {Raffael A. C. Oliveira and
Ricardo V. M. Almeida and
M{\'{a}}rcia D. A. Dantas and
Felipe N. Castro and
Jo{\~{a}}o Paulo M. S. Lima and
Daniel C. F. Lanza},
title = {In silico single strand melting curve: a new approach to identify
nucleic acid polymorphisms in Totiviridae},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {243},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-243},
doi = {10.1186/1471-2105-15-243},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/OliveiraADCLL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OliveiraFHXSO14,
author = {Saulo Henrique Pires de Oliveira and
Felipe A. N. Ferraz and
Rodrigo V. Honorato and
Jos{\'{e}} Xavier{-}Neto and
Tiago Jos{\'{e}} P. Sobreira and
Paulo S. L. de Oliveira},
title = {KVFinder: steered identification of protein cavities as a PyMOL plugin},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {197},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-197},
doi = {10.1186/1471-2105-15-197},
timestamp = {Fri, 29 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OliveiraFHXSO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OmanTBBAHA14,
author = {Tommy {\"{O}}man and
May{-}Britt Tessem and
Tone F. Bathen and
Helena Bertilsson and
Anders Angelsen and
Mattias Hedenstr{\"{o}}m and
Trygve Andreassen},
title = {Identification of metabolites from 2D \({}^{\mbox{1}}\)H-\({}^{\mbox{13}}\)C
{HSQC} {NMR} using peak correlation plots},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {413},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0413-z},
doi = {10.1186/S12859-014-0413-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OmanTBBAHA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OnoK14,
author = {Toshihide Ono and
Satoru Kuhara},
title = {A novel method for gathering and prioritizing disease candidate genes
based on construction of a set of disease-related MeSH(R) terms},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {179},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-179},
doi = {10.1186/1471-2105-15-179},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OnoK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OttoMHALBW14,
author = {Christina Otto and
Mathias M{\"{o}}hl and
Steffen Heyne and
Mika Amit and
Gad M. Landau and
Rolf Backofen and
Sebastian Will},
title = {ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6602},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0404-0},
doi = {10.1186/S12859-014-0404-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OttoMHALBW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Ou-YangDLWZY14,
author = {Le Ou{-}Yang and
Dao{-}Qing Dai and
Xiaoli Li and
Min Wu and
Xiao{-}Fei Zhang and
Peng Yang},
title = {Detecting temporal protein complexes from dynamic protein-protein
interaction networks},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {335},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-335},
doi = {10.1186/1471-2105-15-335},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Ou-YangDLWZY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pala14,
author = {Irene Pala},
title = {Reviewer acknowledgement 2013},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {67},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-67},
doi = {10.1186/1471-2105-15-67},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Pala14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PalaniappanSS14,
author = {Rajkumar Palaniappan and
Kenneth Sundaraj and
Sebastian Sundaraj},
title = {A comparative study of the svm and k-nn machine learning algorithms
for the diagnosis of respiratory pathologies using pulmonary acoustic
signals},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {223},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-223},
doi = {10.1186/1471-2105-15-223},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PalaniappanSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PanZXZ14,
author = {Weihua Pan and
Yanan Zhao and
Yun Xu and
Fengfeng Zhou},
title = {WinHAP2: an extremely fast haplotype phasing program for long genotype
sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {164},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-164},
doi = {10.1186/1471-2105-15-164},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PanZXZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PanwarR14,
author = {Bharat Panwar and
Gajendra P. S. Raghava},
title = {Prediction of uridine modifications in tRNA sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {326},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-326},
doi = {10.1186/1471-2105-15-326},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PanwarR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkS14,
author = {Jungkap Park and
Kazuhiro Saitou},
title = {{ROTAS:} a rotamer-dependent, atomic statistical potential for assessment
and prediction of protein structures},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {307},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-307},
doi = {10.1186/1471-2105-15-307},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkkinenK14,
author = {Juuso A. Parkkinen and
Samuel Kaski},
title = {Probabilistic drug connectivity mapping},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {113},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-113},
doi = {10.1186/1471-2105-15-113},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkkinenK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PatenZHH14,
author = {Benedict Paten and
Daniel R. Zerbino and
Glenn Hickey and
David Haussler},
title = {A unifying model of genome evolution under parsimony},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {206},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-206},
doi = {10.1186/1471-2105-15-206},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PatenZHH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PattnaikGRP14,
author = {Swetansu Pattnaik and
Saurabh Gupta and
Arjun A. Rao and
Binay Panda},
title = {SInC: an accurate and fast error-model based simulator for SNPs, Indels
and CNVs coupled with a read generator for short-read sequence data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {40},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-40},
doi = {10.1186/1471-2105-15-40},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PattnaikGRP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PengTWV14,
author = {Yifan Peng and
Manabu Torii and
Cathy H. Wu and
K. Vijay{-}Shanker},
title = {A Generalizable {NLP} Framework for Fast Development of Pattern-based
Biomedical Relation Extraction Systems},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {285},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-285},
doi = {10.1186/1471-2105-15-285},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PengTWV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PepeG14,
author = {Daniele Pepe and
Mario Grassi},
title = {Investigating perturbed pathway modules from gene expression data
via structural equation models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {132},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-132},
doi = {10.1186/1471-2105-15-132},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PepeG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PerreaultLBPNTD14,
author = {Louis{-}Philippe Lemieux Perreault and
Marc{-}Andr{\'{e}} Legault and
Amina Barhdadi and
Sylvie Provost and
Val{\'{e}}rie Normand and
Jean{-}Claude Tardif and
Marie{-}Pierre Dub{\'{e}}},
title = {Comparison of genotype clustering tools with rare variants},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {52},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-52},
doi = {10.1186/1471-2105-15-52},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PerreaultLBPNTD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PhamNLYCMMB14,
author = {Anne{-}Dominique Pham and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Thomas Lavergne and
Daisuke Yasunaga and
Olivier Cl{\'{e}}ment and
Guy Meyer and
R{\'{e}}my Morello and
Anita Burgun},
title = {Natural language processing of radiology reports for the detection
of thromboembolic diseases and clinically relevant incidental findings},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {266},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-266},
doi = {10.1186/1471-2105-15-266},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PhamNLYCMMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PierceVW14,
author = {Brian G. Pierce and
Thom Vreven and
Zhiping Weng},
title = {Modeling {T} cell receptor recognition of CD1-lipid and MR1-metabolite
complexes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {319},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-319},
doi = {10.1186/1471-2105-15-319},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PierceVW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pissis14,
author = {Solon P. Pissis},
title = {MoTeX-II: structured MoTif eXtraction from large-scale datasets},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {235},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-235},
doi = {10.1186/1471-2105-15-235},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Pissis14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PittMB14,
author = {William R. Pitt and
Rinaldo W. Montalv{\~{a}}o and
Tom L. Blundell},
title = {Polyphony: superposition independent methods for ensemble-based drug
discovery},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {324},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-324},
doi = {10.1186/1471-2105-15-324},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PittMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Powell14,
author = {Justin Andrew Powell},
title = {GO2MSIG, an automated {GO} based multi-species gene set generator
for gene set enrichment analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {146},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-146},
doi = {10.1186/1471-2105-15-146},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Powell14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PravdaBVSBLKO14,
author = {Luk{\'{a}}s Pravda and
Karel Berka and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
David Sehnal and
Pavel Ban{\'{a}}s and
Roman A. Laskowski and
Jaroslav Koca and
Michal Otyepka},
title = {Anatomy of enzyme channels},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {379},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0379-x},
doi = {10.1186/S12859-014-0379-X},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PravdaBVSBLKO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QiABM14,
author = {Jianlong Qi and
Hassan Asl and
Johan Bj{\"{o}}rkegren and
Tom Michoel},
title = {kruX: matrix-based non-parametric eQTL discovery},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {11},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-11},
doi = {10.1186/1471-2105-15-11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/QiABM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QiWRMGXZGPFY14,
author = {Xin Qi and
Daihou Wang and
Ivan Rodero and
Javier Diaz Montes and
Rebekah H. Gensure and
Fuyong Xing and
Hua Zhong and
Lauri A. Goodell and
Manish Parashar and
David J. Foran and
Lin Yang},
title = {Content-based histopathology image retrieval using CometCloud},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {287},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-287},
doi = {10.1186/1471-2105-15-287},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QiWRMGXZGPFY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RahmatallahEG14,
author = {Yasir Rahmatallah and
Frank Emmert{-}Streib and
Galina V. Glazko},
title = {Comparative evaluation of gene set analysis approaches for RNA-Seq
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {397},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0397-8},
doi = {10.1186/S12859-014-0397-8},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RahmatallahEG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RamakrishnanBSRRMGESRB14,
author = {Chandrasekhar Ramakrishnan and
Andrej Bieri and
Nora Sauter and
Sophie Roizard and
Philippe Ringler and
Shirley A. M{\"{u}}ller and
Kenneth N. Goldie and
Kaloyan Enimanev and
Henning Stahlberg and
Bernd Rinn and
Thomas Braun},
title = {openBEB: open biological experiment browser for correlative measurements},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {84},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-84},
doi = {10.1186/1471-2105-15-84},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RamakrishnanBSRRMGESRB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RaposoG14,
author = {Adriano N. Raposo and
Abel Jo{\~{a}}o Padr{\~{a}}o Gomes},
title = {Efficient deformation algorithm for plasmid {DNA} simulations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {301},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-301},
doi = {10.1186/1471-2105-15-301},
timestamp = {Thu, 25 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RaposoG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RauMJ14,
author = {Andrea Rau and
Guillemette Marot and
Florence Jaffr{\'{e}}zic},
title = {Differential meta-analysis of RNA-seq data from multiple studies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {91},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-91},
doi = {10.1186/1471-2105-15-91},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RauMJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RayWCDLLMB14,
author = {William C. Ray and
Samuel L. Wolock and
Nicholas W. Callahan and
Min Dong and
Qingshun Quinn Li and
Chun Liang and
Thomas J. Magliery and
Christopher W. Bartlett},
title = {Addressing the unmet need for visualizing conditional random fields
in biological data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {202},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-202},
doi = {10.1186/1471-2105-15-202},
timestamp = {Sun, 17 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RayWCDLLMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Reboiro-JatoAOF14,
author = {Miguel Reboiro{-}Jato and
Joel Arrais and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
Florentino Fdez{-}Riverola},
title = {geneCommittee: a web-based tool for extensively testing the discriminatory
power of biologically relevant gene sets in microarray data classification},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {31},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-31},
doi = {10.1186/1471-2105-15-31},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Reboiro-JatoAOF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReidCVDSEBWSBYMDDGB14,
author = {Jeffrey G. Reid and
Andrew Carroll and
Narayanan Veeraraghavan and
Mahmoud Dahdouli and
Andreas Sundquist and
Adam C. English and
Matthew N. Bainbridge and
Simon White and
William J. Salerno and
Christian Buhay and
Fuli Yu and
Donna M. Muzny and
Richard Daly and
Geoff Duyk and
Richard A. Gibbs and
Eric Boerwinkle},
title = {Launching genomics into the cloud: deployment of Mercury, a next generation
sequence analysis pipeline},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {30},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-30},
doi = {10.1186/1471-2105-15-30},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReidCVDSEBWSBYMDDGB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReidOZNDAGSBST14,
author = {Ian Reid and
Nicholas O'Toole and
Omar Zabaneh and
Reza Nourzadeh and
Mahmoud Dahdouli and
Mostafa Abdellateef and
Paul M. K. Gordon and
Jung Soh and
Gregory Butler and
Christoph W. Sensen and
Adrian Tsang},
title = {SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and
homology information to select among ab initio models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {229},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-229},
doi = {10.1186/1471-2105-15-229},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ReidOZNDAGSBST14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RenaudLLWB14,
author = {Gabriel Renaud and
Matthew C. LaFave and
Jin Liang and
Tyra G. Wolfsberg and
Shawn M. Burgess},
title = {trieFinder: an efficient program for annotating digital gene expression
{(DGE)} tags},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {329},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-329},
doi = {10.1186/1471-2105-15-329},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RenaudLLWB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RigdenEGXCG14,
author = {Daniel J. Rigden and
Ruth Y. Eberhardt and
Harry J. Gilbert and
Qingping Xu and
Yuanyuan Chang and
Adam Godzik},
title = {Structure- and context-based analysis of the GxGYxYP family reveals
a new putative class of Glycoside Hydrolase},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {196},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-196},
doi = {10.1186/1471-2105-15-196},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RigdenEGXCG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RighettoMCF14,
author = {Irene Righetto and
Adelaide Milani and
Giovanni Cattoli and
Francesco Filippini},
title = {Comparative structural analysis of haemagglutinin proteins from type
{A} influenza viruses: conserved and variable features},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {363},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0363-5},
doi = {10.1186/S12859-014-0363-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RighettoMCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RijlaarsdamZDL14,
author = {Martin A. Rijlaarsdam and
Yvonne G. van der Zwan and
Lambert C. J. Dorssers and
Leendert H. J. Looijenga},
title = {{DMR2+:} identifying Differentially Methylated Regions between unique
samples using array based methylation profiles},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {141},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-141},
doi = {10.1186/1471-2105-15-141},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RijlaarsdamZDL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Roche-LimaDF14,
author = {Abiel Roche{-}Lima and
Michael Domaratzki and
Brian Fristensky},
title = {Metabolic Network Prediction Through Pairwise Rational Kernels},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {318},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-318},
doi = {10.1186/1471-2105-15-318},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Roche-LimaDF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Rodriguez-LopezRSM14,
author = {Roc{\'{\i}}o Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Armando Reyes{-}Palomares and
Francisca S{\'{a}}nchez{-}Jim{\'{e}}nez and
Miguel Angel Medina},
title = {PhenUMA: a tool for integrating the biomedical relationships among
genes and diseases},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {375},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0375-1},
doi = {10.1186/S12859-014-0375-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Rodriguez-LopezRSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoiderPKSSUW14,
author = {Helge G. Roider and
Nadia Pavlova and
Ivaylo Kirov and
Stoyan Slavov and
Todor Slavov and
Zlatyo Uzunov and
Bertram Weiss},
title = {Drug2Gene: an exhaustive resource to explore effectively the drug-target
relation network},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {68},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-68},
doi = {10.1186/1471-2105-15-68},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RoiderPKSSUW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RouxTMDE14,
author = {Simon Roux and
Jeremy Tournayre and
Antoine Mahul and
Didier Debroas and
Fran{\c{c}}ois Enault},
title = {Metavir 2: new tools for viral metagenome comparison and assembled
virome analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {76},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-76},
doi = {10.1186/1471-2105-15-76},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RouxTMDE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RudniySG14,
author = {Alex Rudniy and
Min Song and
James Geller},
title = {Mapping biological entities using the Longest Approximately Common
Prefix method},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {187},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-187},
doi = {10.1186/1471-2105-15-187},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RudniySG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyanE14,
author = {Devon Patrick Ryan and
Dan Ehninger},
title = {Bison: bisulfite alignment on nodes of a cluster},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {337},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-337},
doi = {10.1186/1471-2105-15-337},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RyanE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyslikCCBZMZ14,
author = {Gregory A. Ryslik and
Yuwei Cheng and
Kei{-}Hoi Cheung and
Robert D. Bjornson and
Daniel Zelterman and
Yorgo Modis and
Hongyu Zhao},
title = {A spatial simulation approach to account for protein structure when
identifying non-random somatic mutations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {231},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-231},
doi = {10.1186/1471-2105-15-231},
timestamp = {Tue, 17 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RyslikCCBZMZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyslikCCMZ14,
author = {Gregory A. Ryslik and
Yuwei Cheng and
Kei{-}Hoi Cheung and
Yorgo Modis and
Hongyu Zhao},
title = {A graph theoretic approach to utilizing protein structure to identify
non-random somatic mutations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {86},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-86},
doi = {10.1186/1471-2105-15-86},
timestamp = {Tue, 17 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RyslikCCMZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaccaTDP14,
author = {Claudio Sacc{\`{a}} and
Stefano Teso and
Michelangelo Diligenti and
Andrea Passerini},
title = {Improved multi-level protein{\textquestiondown}protein interaction
prediction with semantic-based regularization},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {103},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-103},
doi = {10.1186/1471-2105-15-103},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaccaTDP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SahSCB14,
author = {Pratha Sah and
Lisa O. Singh and
Aaron Clauset and
Shweta Bansal},
title = {Exploring community structure in biological networks with random graphs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {220},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-220},
doi = {10.1186/1471-2105-15-220},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SahSCB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SahlinVNLA14,
author = {Kristoffer Sahlin and
Francesco Vezzi and
Bj{\"{o}}rn Nystedt and
Joakim Lundeberg and
Lars Arvestad},
title = {{BESST} - Efficient scaffolding of large fragmented assemblies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {281},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-281},
doi = {10.1186/1471-2105-15-281},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SahlinVNLA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalazarMMRAM14,
author = {Gustavo A. Salazar and
Ayton Meintjes and
Gaston K. Mazandu and
Holifidy A. Rapano{\"{e}}l and
Richard O. Akinola and
Nicola J. Mulder},
title = {A web-based protein interaction network visualizer},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {129},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-129},
doi = {10.1186/1471-2105-15-129},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SalazarMMRAM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalisburyLA14,
author = {Joseph P. Salisbury and
Qian Liu and
Jeffrey N. Agar},
title = {QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra
with resolved isotopic fine structure},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {403},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0403-1},
doi = {10.1186/S12859-014-0403-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SalisburyLA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SantellaDB14,
author = {Anthony Santella and
Zhuo Du and
Zhirong Bao},
title = {A Semi-Local Neighborhood-based Framework for Probabilistic Cell Lineage
Tracing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {217},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-217},
doi = {10.1186/1471-2105-15-217},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SantellaDB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SariyarHB14,
author = {Murat Sariyar and
Isabell Hoffmann and
Harald Binder},
title = {Combining techniques for screening and evaluating interaction terms
on high-dimensional time-to-event data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {58},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-58},
doi = {10.1186/1471-2105-15-58},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SariyarHB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaundersSI14,
author = {Garrett Saunders and
John R. Stevens and
S. Isom},
title = {A shortcut for multiple testing on the directed acyclic graph of gene
ontology},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {349},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0349-3},
doi = {10.1186/S12859-014-0349-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaundersSI14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchoenrockSPHJPWPOGAWBBBLGDG14,
author = {Andrew Schoenrock and
Bahram Samanfar and
Sylvain Pitre and
Mohsen Hooshyar and
Ke Jin and
Charles A. Phillips and
Hui Wang and
Sadhna Phanse and
Katayoun Omidi and
Yuan Gui and
Md Alamgir and
Alex Wong and
Fredrik Barren{\"{a}}s and
Mohan Babu and
Mikael Benson and
Michael A. Langston and
James R. Green and
Frank K. H. A. Dehne and
Ashkan Golshani},
title = {Efficient prediction of human protein-protein interactions at a global
scale},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {383},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0383-1},
doi = {10.1186/S12859-014-0383-1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchoenrockSPHJPWPOGAWBBBLGDG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchweigerTP14,
author = {Dominik Schweiger and
Zlatko Trajanoski and
Stephan Pabinger},
title = {SPARQLGraph: a web-based platform for graphically querying biological
Semantic Web databases},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {279},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-279},
doi = {10.1186/1471-2105-15-279},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchweigerTP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SharmaSRR14,
author = {Arun Sharma and
Deepak Singla and
Mamoon Rashid and
Gajendra Pal Singh Raghava},
title = {Designing of peptides with desired half-life in intestine-like environment},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {282},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-282},
doi = {10.1186/1471-2105-15-282},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SharmaSRR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SharminI14,
author = {Refat Sharmin and
Abul Bashar Mir Md Khademul Islam},
title = {A highly conserved {WDYPKCDRA} epitope in the {RNA} directed {RNA}
polymerase of human coronaviruses can be used as epitope-based universal
vaccine design},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {161},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-161},
doi = {10.1186/1471-2105-15-161},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SharminI14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShawGKMM14,
author = {Paul D. Shaw and
Martin Graham and
Jessie B. Kennedy and
Iain Milne and
David F. Marshall},
title = {Helium: visualization of large scale plant pedigrees},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {259},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-259},
doi = {10.1186/1471-2105-15-259},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShawGKMM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShengSC14,
author = {Quanhu Sheng and
Yu Shyr and
Xi Chen},
title = {DupChecker: a bioconductor package for checking high-throughput genomic
data redundancy in meta-analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {323},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-323},
doi = {10.1186/1471-2105-15-323},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShengSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SheydinaERCLZAG14,
author = {Anna Sheydina and
Ruth Y. Eberhardt and
Daniel J. Rigden and
Yuanyuan Chang and
Zhanwen Li and
Christian M. Zmasek and
Herbert L. Axelrod and
Adam Godzik},
title = {Structural genomics analysis of uncharacterized protein families overrepresented
in human gut bacteria identifies a novel glycoside hydrolase},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {112},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-112},
doi = {10.1186/1471-2105-15-112},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SheydinaERCLZAG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShingateMSS14,
author = {Prashant Shingate and
Malini Manoharan and
Anshul Sukhwal and
Ramanathan Sowdhamini},
title = {{ECMIS:} computational approach for the identification of hotspots
at protein-protein interfaces},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {303},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-303},
doi = {10.1186/1471-2105-15-303},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShingateMSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShresthaLBMMT14,
author = {Ram Shrestha and
Baruch Lubinsky and
Vijay B. Bansode and
M{\'{o}}nica B. J. Moinz and
Grace P. McCormack and
Simon A. A. Travers},
title = {QTrim: a novel tool for the quality trimming of sequence reads generated
using the Roche/454 sequencing platform},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {33},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-33},
doi = {10.1186/1471-2105-15-33},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShresthaLBMMT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SieversHH14,
author = {Fabian Sievers and
Graham M. Hughes and
Desmond G. Higgins},
title = {Systematic exploration of guide-tree topology effects for small protein
alignments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {338},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-338},
doi = {10.1186/1471-2105-15-338},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SieversHH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SkarshewskiSHMSBR14,
author = {Adam Skarshewski and
Mitchell Stanton{-}Cook and
Thomas Huber and
Sumaya Al Mansoori and
Ross Smith and
Scott A. Beatson and
Joseph A. Rothnagel},
title = {uPEPperoni: An online tool for upstream open reading frame location
and analysis of transcript conservation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {36},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-36},
doi = {10.1186/1471-2105-15-36},
timestamp = {Fri, 24 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SkarshewskiSHMSBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SkjaervenYSG14,
author = {Lars Skj{\ae}rven and
Xin{-}Qiu Yao and
Guido Scarabelli and
Barry J. Grant},
title = {Integrating protein structural dynamics and evolutionary analysis
with Bio3D},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {399},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0399-6},
doi = {10.1186/S12859-014-0399-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SkjaervenYSG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SlugaCZL14,
author = {Davor Sluga and
Tomaz Curk and
Blaz Zupan and
Uros Lotric},
title = {Heterogeneous computing architecture for fast detection of {SNP-SNP}
interactions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {216},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-216},
doi = {10.1186/1471-2105-15-216},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SlugaCZL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohnAPL14,
author = {Michael B. Sohn and
Lingling An and
Naruekamol Pookhao and
Qike Li},
title = {Accurate genome relative abundance estimation for closely related
species in a metagenomic sample},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {242},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-242},
doi = {10.1186/1471-2105-15-242},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohnAPL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SomfaiTLVOJWSSD14,
author = {G{\'{a}}bor M{\'{a}}rk Somfai and
Erika T{\'{a}}trai and
Lenke Laurik and
Bogl{\'{a}}rka Varga and
Veronika {\"{O}}lvedy and
Hong Jiang and
Jianhua Wang and
William E. Smiddy and
Anik{\'{o}} Somogyi and
Delia Cabrera DeBuc},
title = {Automated classifiers for early detection and diagnosis of retinopathy
in diabetic eyes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {106},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-106},
doi = {10.1186/1471-2105-15-106},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SomfaiTLVOJWSSD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SomfaiTLVOSTSD14,
author = {G{\'{a}}bor M{\'{a}}rk Somfai and
Erika T{\'{a}}trai and
Lenke Laurik and
Bogl{\'{a}}rka Varga and
Vera {\"{O}}lvedy and
William E. Smiddy and
Robert Tchitnga and
Anik{\'{o}} Somogyi and
Delia Cabrera DeBuc},
title = {Fractal-based analysis of optical coherence tomography data to quantify
retinal tissue damage},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {295},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-295},
doi = {10.1186/1471-2105-15-295},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SomfaiTLVOSTSD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongLZWGZ14,
author = {Li Song and
Dapeng Li and
Xiangxiang Zeng and
Yunfeng Wu and
Li Guo and
Quan Zou},
title = {nDNA-prot: identification of DNA-binding proteins based on unbalanced
classification},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {298},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-298},
doi = {10.1186/1471-2105-15-298},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongLZWGZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SpeiserPZBBBBCGLPPPRSZCO14,
author = {Daniel I. Speiser and
M. Sabrina Pankey and
Alexander K. Zaharoff and
Barbara A. Battelle and
Heather D. Bracken{-}Grissom and
Jesse W. Breinholt and
Seth M. Bybee and
Thomas W. Cronin and
Anders Garm and
Annie R. Lindgren and
Nipam H. Patel and
Megan L. Porter and
Meredith E. Protas and
Ajna S. Rivera and
Jeanne M. Serb and
Kirk S. Zigler and
Keith A. Crandall and
Todd H. Oakley},
title = {Using phylogenetically-informed annotation {(PIA)} to search for light-interacting
genes in transcriptomes from non-model organisms},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {350},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0350-x},
doi = {10.1186/S12859-014-0350-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SpeiserPZBBBBCGLPPPRSZCO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SpiroCS14,
author = {Adam Spiro and
Luca Cardelli and
Ehud Shapiro},
title = {Lineage grammars: describing, simulating and analyzing population
dynamics},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {249},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-249},
doi = {10.1186/1471-2105-15-249},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SpiroCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StubbenC14,
author = {Chris J. Stubben and
Jean F. Challacombe},
title = {Mining locus tags in PubMed Central to improve microbial gene annotation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {43},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-43},
doi = {10.1186/1471-2105-15-43},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StubbenC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StuckyDCZCG14,
author = {Brian J. Stucky and
John Deck and
Tom Conlin and
Lukasz Ziemba and
Nico Cellinese and
Robert P. Guralnick},
title = {The BiSciCol Triplifier: bringing biodiversity data to the Semantic
Web},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {257},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-257},
doi = {10.1186/1471-2105-15-257},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StuckyDCZCG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunGLP14,
author = {Kai Sun and
Joana P. Gon{\c{c}}alves and
Chris Larminie and
Natasa Przulj},
title = {Predicting disease associations via biological network analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {304},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-304},
doi = {10.1186/1471-2105-15-304},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunGLP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunZ14,
author = {Xiaohan Sun and
Junying Zhang},
title = {Identification of putative pathogenic SNPs implied in schizophrenia-associated
miRNAs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {194},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-194},
doi = {10.1186/1471-2105-15-194},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SunZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuvitaivalRK14,
author = {Tommi Suvitaival and
Simon Rogers and
Samuel Kaski},
title = {Stronger findings from mass spectral data through multi-peak modeling},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {208},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-208},
doi = {10.1186/1471-2105-15-208},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuvitaivalRK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TafavoghCK14,
author = {Siamak Tafavogh and
Daniel R. Catchpoole and
Paul J. Kennedy},
title = {Cellular quantitative analysis of neuroblastoma tumor and splitting
overlapping cells},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {272},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-272},
doi = {10.1186/1471-2105-15-272},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TafavoghCK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TaliunGP14,
author = {Daniel Taliun and
Johann Gamper and
Cristian Pattaro},
title = {Efficient haplotype block recognition of very long and dense genetic
sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {10},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-10},
doi = {10.1186/1471-2105-15-10},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TaliunGP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TecleEMERKKJM14,
author = {Isaak Y. Tecle and
Jeremy D. Edwards and
Naama Menda and
Chiedozie Egesi and
Ismail Y. Rabbi and
Peter Kulakow and
Robert Kawuki and
Jean{-}Luc Jannink and
Lukas A. Mueller},
title = {solGS: a web-based tool for genomic selection},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {398},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0398-7},
doi = {10.1186/S12859-014-0398-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TecleEMERKKJM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TeramotoSF14,
author = {Reiji Teramoto and
Chiaki Saito and
Shin{-}ichi Funahashi},
title = {Estimating causal effects with a non-paranormal method for the design
of efficient intervention experiments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {228},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-228},
doi = {10.1186/1471-2105-15-228},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TeramotoSF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TesoP14,
author = {Stefano Teso and
Andrea Passerini},
title = {Joint probabilistic-logical refinement of multiple protein feature
predictors},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {16},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-16},
doi = {10.1186/1471-2105-15-16},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TesoP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TessierLDRCH14,
author = {Dominique Tessier and
Sami Laroum and
B{\'{e}}atrice Duval and
Emma M. Rath and
W. Bret Church and
Jin{-}Kao Hao},
title = {In silico evaluation of the influence of the translocon on partitioning
of membrane segments},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {156},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-156},
doi = {10.1186/1471-2105-15-156},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TessierLDRCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThiWY0MC14,
author = {Tuan Hue Thi and
Li Wang and
Ning Ye and
Jian Zhang and
Sebastian Maurer{-}Stroh and
Li Cheng},
title = {Recognizing flu-like symptoms from videos},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {300},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-300},
doi = {10.1186/1471-2105-15-300},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThiWY0MC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThomasBM14,
author = {Minta Thomas and
Kris De Brabanter and
Bart De Moor},
title = {New Bandwidth Selection Criterion for Kernel {PCA:} Approach to Dimensionality
Reduction and Classification Problems},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {137},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-137},
doi = {10.1186/1471-2105-15-137},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThomasBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThomasBSM14,
author = {Minta Thomas and
Kris De Brabanter and
Johan A. K. Suykens and
Bart De Moor},
title = {Predicting breast cancer using an expression values weighted clinical
classifier},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6603},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0411-1},
doi = {10.1186/S12859-014-0411-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThomasBSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TianCWJWN14,
author = {Suyan Tian and
Howard H. Chang and
Chi Wang and
Jing Jiang and
Xiaomei Wang and
Junqi Niu},
title = {Multi-TGDR, a multi-class regularization method, identifies the metabolic
profiles of hepatocellular carcinoma and cirrhosis infected with hepatitis
{B} or hepatitis {C} virus},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {97},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-97},
doi = {10.1186/1471-2105-15-97},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TianCWJWN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TikoleJRDG14,
author = {Suhas Tikole and
Victor Jaravine and
Vladimir Rogov and
Volker D{\"{o}}tsch and
Peter G{\"{u}}ntert},
title = {Peak picking {NMR} spectral data using non-negative matrix factorization},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {46},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-46},
doi = {10.1186/1471-2105-15-46},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TikoleJRDG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TiwariFHSCGTR14,
author = {Sandhya P. Tiwari and
Edvin Fuglebakk and
Siv Midtun Hollup and
Lars Skj{\ae}rven and
Tristan Cragnolini and
Svenn Helge Grindhaug and
Kidane M. Tekle and
Nathalie Reuter},
title = {WEBnm@ v2.0: Web server and services for comparing protein flexibility},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6597},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0427-6},
doi = {10.1186/S12859-014-0427-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TiwariFHSCGTR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TrameCAECPR14,
author = {Christine B. Trame and
Yuanyuan Chang and
Herbert L. Axelrod and
Ruth Y. Eberhardt and
Penelope Coggill and
Marco Punta and
Neil D. Rawlings},
title = {New mini- zincin structures provide a minimal scaffold for members
of this metallopeptidase superfamily},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-1},
doi = {10.1186/1471-2105-15-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TrameCAECPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TranLPGRKLV14,
author = {Truyen Tran and
Wei Luo and
Dinh Q. Phung and
Sunil Gupta and
Santu Rana and
Richard Kennedy and
Ann Larkins and
Svetha Venkatesh},
title = {A framework for feature extraction from hospital medical data with
applications in risk prediction},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6596},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0425-8},
doi = {10.1186/S12859-014-0425-8},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TranLPGRKLV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TruntzerMJPDC14,
author = {Caroline Truntzer and
Elise Mostacci and
Aline Jeannin and
Jean{-}Michel Petit and
Patrick Ducoroy and
Herv{\'{e}} Cardot},
title = {Comparison of classification methods that combine clinical data and
high-dimensional mass spectrometry data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {385},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0385-z},
doi = {10.1186/S12859-014-0385-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TruntzerMJPDC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsaiL14,
author = {Richard Tzong{-}Han Tsai and
Po{-}Ting Lai},
title = {A resource-saving collective approach to biomedical semantic role
labeling},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {160},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-160},
doi = {10.1186/1471-2105-15-160},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TsaiL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UenoII14,
author = {Keisuke Ueno and
Akihiro Ishii and
Kimihito Ito},
title = {{ELM:} enhanced lowest common ancestor based method for detecting
a pathogenic virus from a large sequence dataset},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {254},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-254},
doi = {10.1186/1471-2105-15-254},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/UenoII14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VaesKM14,
author = {Evelien Vaes and
Mona Khan and
Peter Mombaerts},
title = {Statistical analysis of differential gene expression relative to a
fold change threshold on NanoString data of mouse odorant receptor
genes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {39},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-39},
doi = {10.1186/1471-2105-15-39},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VaesKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VaremoGN14,
author = {Leif V{\"{a}}remo and
Francesco Gatto and
Jens Nielsen},
title = {Kiwi: a tool for integration and visualization of network topology
and gene-set analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {408},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0408-9},
doi = {10.1186/S12859-014-0408-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VaremoGN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Veliz-CubaAHL14,
author = {Alan Veliz{-}Cuba and
Boris Aguilar and
Franziska Hinkelmann and
Reinhard C. Laubenbacher},
title = {Steady state analysis of Boolean molecular network models via model
reduction and computational algebra},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {221},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-221},
doi = {10.1186/1471-2105-15-221},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Veliz-CubaAHL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VenkatesanTGBLMK14,
author = {Aravind Venkatesan and
Sushil Tripathi and
Alejandro Sanz de Galdeano and
Ward Blond{\'{e}} and
Astrid L{\ae}greid and
Vladimir Mironov and
Martin Kuiper},
title = {Finding gene regulatory network candidates using the gene expression
knowledge base},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {386},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0386-y},
doi = {10.1186/S12859-014-0386-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VenkatesanTGBLMK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VidemGSMBS14,
author = {Pavankumar Videm and
Deepika Gunasekaran and
Bernd Schr{\"{o}}der and
Bettina Mayer and
Martin L. Biniossek and
Oliver Schilling},
title = {Automated peptide mapping and protein-topographical annotation of
proteomics data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {207},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-207},
doi = {10.1186/1471-2105-15-207},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VidemGSMBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Vitting-SeerupPSW14,
author = {Kristoffer Vitting{-}Seerup and
Bo T. Porse and
Albin Sandelin and
Johannes Waage},
title = {spliceR: an {R} package for classification of alternative splicing
and prediction of coding potential from RNA-seq data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {81},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-81},
doi = {10.1186/1471-2105-15-81},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Vitting-SeerupPSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WagnerVSVOSH14,
author = {Ines Wagner and
Michael Volkmer and
Malvika Sharan and
Jose M. Villaveces and
Felix Oswald and
Vineeth Surendranath and
Bianca Habermann},
title = {morFeus: a web-based program to detect remotely conserved orthologs
using symmetrical best hits and orthology network scoring},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {263},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-263},
doi = {10.1186/1471-2105-15-263},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WagnerVSVOSH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WahlFZSGWGS14,
author = {Simone Wahl and
Nora Fenske and
Sonja Zeilinger and
Karsten Suhre and
Christian Gieger and
Melanie Waldenberger and
Harald Grallert and
Matthias Schmid},
title = {On the potential of models for location and scale for genome-wide
{DNA} methylation data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {232},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-232},
doi = {10.1186/1471-2105-15-232},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WahlFZSGWGS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WaitWBKWGTC14,
author = {Eric Wait and
Mark R. Winter and
Christopher Bj{\"{o}}rnsson and
Erzsebet Kokovay and
Yue Wang and
Susan Goderie and
Sally Temple and
Andrew R. Cohen},
title = {Visualization and Correction of Automated Segmentation, Tracking and
Lineaging from 5-D Stem Cell Image Sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {328},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-328},
doi = {10.1186/1471-2105-15-328},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WaitWBKWGTC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WaldonTHM14,
author = {Shawn M. Waldon and
Peter M. Thompson and
Patrick J. Hahn and
Russell M. Taylor II},
title = {SketchBio: a scientist's 3D interface for molecular modeling and animation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {334},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-334},
doi = {10.1186/1471-2105-15-334},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WaldonTHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WalterSGBKH14,
author = {Wencke Walter and
Bernd Striberny and
Emmanuel Gaquerel and
Ian T. Baldwin and
Sang{-}Gyu Kim and
Ines Heiland},
title = {Improving the accuracy of expression data analysis in time course
experiments using resampling},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {352},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0352-8},
doi = {10.1186/S12859-014-0352-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WalterSGBKH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Wang14,
author = {Junbai Wang},
title = {Quality versus accuracy: result of a reanalysis of protein-binding
microarrays from the {DREAM5} challenge by using BayesPI2 including
dinucleotide interdependence},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {289},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-289},
doi = {10.1186/1471-2105-15-289},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Wang14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangCWP14,
author = {Hsin{-}Wei Wang and
Chia{-}Han Chu and
Wen{-}Ching Wang and
Tun{-}Wen Pai},
title = {A local average distance descriptor for flexible protein structure
comparison},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {95},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-95},
doi = {10.1186/1471-2105-15-95},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangCWP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangGL14,
author = {Ting Wang and
Jin Gu and
Yanda Li},
title = {Inferring the perturbed microRNA regulatory networks from gene expression
data using a network propagation based method},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {255},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-255},
doi = {10.1186/1471-2105-15-255},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangGL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangLHGS14,
author = {Xinhui Wang and
Peter W. Laird and
Toshinori Hinoue and
Susan Groshen and
Kimberly D. Siegmund},
title = {Non-specific filtering of beta-distributed data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {199},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-199},
doi = {10.1186/1471-2105-15-199},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangLHGS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangLLXHXL14,
author = {Kai Wang and
Chun Liang and
Jinding Liu and
Huamei Xiao and
Shuiqing Huang and
Jianhua Xu and
Fei Li},
title = {Prediction of piRNAs using transposon interaction and a support vector
machine},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {6593},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0419-6},
doi = {10.1186/S12859-014-0419-6},
timestamp = {Sun, 28 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangLLXHXL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangLQL14,
author = {Zixing Wang and
F. Anthony San Lucas and
Peng Qiu and
Yin Liu},
title = {Improving the sensitivity of sample clustering by leveraging gene
co-expression networks in variable selection},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {153},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-153},
doi = {10.1186/1471-2105-15-153},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangLQL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangNY14,
author = {Heng Wang and
Dan Nettleton and
Kai Ying},
title = {Copy number variation detection using next generation sequencing read
counts},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {109},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-109},
doi = {10.1186/1471-2105-15-109},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangNY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangPD14,
author = {Xiaoming Wang and
Saumyadipta Pyne and
Irina Dinu},
title = {Gene set enrichment analysis for multiple continuous phenotypes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {260},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-260},
doi = {10.1186/1471-2105-15-260},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangPD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangPJEGOG14,
author = {Shicai Wang and
Ioannis Pandis and
David Johnson and
Ibrahim Emam and
Florian Guitton and
Axel Oehmichen and
Yike Guo},
title = {Optimising parallel {R} correlation matrix calculations on gene expression
data using MapReduce},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {351},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0351-9},
doi = {10.1186/S12859-014-0351-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangPJEGOG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangPWPRD14,
author = {Chunkao Wang and
Dzianis Prakapenka and
Shengwen Wang and
Sujata Pulugurta and
Hakizumwami Runesha and
Yang Da},
title = {{GVCBLUP:} a computer package for genomic prediction and variance
component estimation of additive and dominance effects},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {270},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-270},
doi = {10.1186/1471-2105-15-270},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangPWPRD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangXSSY14,
author = {Hongyuan Wang and
Fuyong Xing and
Hai Su and
Arnold J. Stromberg and
Lin Yang},
title = {Novel image markers for non-small cell lung cancer classification
and survival prediction},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {310},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-310},
doi = {10.1186/1471-2105-15-310},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangXSSY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangZLCLMX14,
author = {Ying Wang and
Ying Zhou and
Linfeng Li and
Xian Chen and
Yuting Liu and
Zhiming Ma and
Shuhua Xu},
title = {A New Method for Modeling Coalescent Processes with Recombination},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {273},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-273},
doi = {10.1186/1471-2105-15-273},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangZLCLMX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WarneckeSAH14,
author = {Andreas Warnecke and
Tatyana Sandalova and
Adnane Achour and
Robert A. Harris},
title = {PyTMs: a useful PyMOL plugin for modeling common post-translational
modifications},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {370},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0370-6},
doi = {10.1186/S12859-014-0370-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WarneckeSAH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WenskovitchHTFM14,
author = {John E. Wenskovitch and
Leonard A. Harris and
Jos{\'{e}} Juan Tapia and
James R. Faeder and
G. Elisabeta Marai},
title = {{MOSBIE:} a tool for comparison and analysis of rule-based biochemical
models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {316},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-316},
doi = {10.1186/1471-2105-15-316},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WenskovitchHTFM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WheelerCF14,
author = {Travis J. Wheeler and
Jody Clements and
Robert D. Finn},
title = {Skylign: a tool for creating informative, interactive logos representing
sequence alignments and profile hidden Markov models},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {7},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-7},
doi = {10.1186/1471-2105-15-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WheelerCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WhitleyRCNGS14,
author = {David C. Whitley and
Valeria Runfola and
Peter Cary and
Liliya Nazlamova and
Matt Guille and
Garry Scarlett},
title = {{APTE:} identification of indirect read-out {A-DNA} promoter elements
in genomes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {288},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-288},
doi = {10.1186/1471-2105-15-288},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WhitleyRCNGS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WickDNSFHBBS14,
author = {Heather C. Wick and
Harold J. Drabkin and
Huy Ngu and
Michael Sackman and
Craig Fournier and
Jessica Haggett and
Judith A. Blake and
Diana W. Bianchi and
Donna K. Slonim},
title = {{DFLAT:} functional annotation for human development},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {45},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-45},
doi = {10.1186/1471-2105-15-45},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WickDNSFHBBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WielNBSV14,
author = {Mark A. van de Wiel and
Maarten Neerincx and
Tineke E. Buffart and
Daoud Sie and
Henk M. W. Verheul},
title = {ShrinkBayes: a versatile R-package for analysis of count-based sequencing
data in complex study designs},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {116},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-116},
doi = {10.1186/1471-2105-15-116},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WielNBSV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Wilhelm14,
author = {Thomas Wilhelm},
title = {Phenotype prediction based on genome-wide {DNA} methylation data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {193},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-193},
doi = {10.1186/1471-2105-15-193},
timestamp = {Fri, 11 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Wilhelm14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilkinsonA14,
author = {Sean R. Wilkinson and
Jonas S. Almeida},
title = {QMachine: commodity supercomputing in web browsers},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {176},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-176},
doi = {10.1186/1471-2105-15-176},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilkinsonA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WirawanHLSS14,
author = {Adrianto Wirawan and
Robert S. Harris and
Yongchao Liu and
Bertil Schmidt and
Jan Schr{\"{o}}der},
title = {{HECTOR:} a parallel multistage homopolymer spectrum based error corrector
for 454 sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {131},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-131},
doi = {10.1186/1471-2105-15-131},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WirawanHLSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WongMEE14,
author = {Wing{-}Cheong Wong and
Sebastian Maurer{-}Stroh and
Birgit Eisenhaber and
Frank Eisenhaber},
title = {On the necessity of dissecting sequence similarity scores into segment-specific
contributions for inferring protein homology, function prediction
and annotation},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {166},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-166},
doi = {10.1186/1471-2105-15-166},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WongMEE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WozniakWT14,
author = {Michal Wozniak and
Limsoon Wong and
Jerzy Tiuryn},
title = {eCAMBer: efficient support for large-scale comparative analysis of
multiple bacterial strains},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {65},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-65},
doi = {10.1186/1471-2105-15-65},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WozniakWT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuLW14,
author = {Rong Xu and
Li Li and
QuanQiu Wang},
title = {dRiskKB: a large-scale disease-disease risk relationship knowledge
base constructed from biomedical text},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {105},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-105},
doi = {10.1186/1471-2105-15-105},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuLW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuW14,
author = {Rong Xu and
QuanQiu Wang},
title = {Large-scale combining signals from both biomedical literature and
the {FDA} Adverse Event Reporting System {(FAERS)} to improve post-marketing
drug safety signal detection},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {17},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-17},
doi = {10.1186/1471-2105-15-17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YamamotoFSIKO14,
author = {Hiroyuki Yamamoto and
Tamaki Fujimori and
Hajime Sato and
Gen Ishikawa and
Kenjiro Kami and
Yoshiaki Ohashi},
title = {Statistical hypothesis testing of factor loading in principal component
analysis and its application to metabolite set enrichment analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {51},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-51},
doi = {10.1186/1471-2105-15-51},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YamamotoFSIKO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YanEKMMLWBLSCK14,
author = {Huihuang Yan and
Jared Evans and
Mike Kalmbach and
Raymond M. Moore and
Sumit Middha and
Stanislav Luban and
Liguo Wang and
Aditya Bhagwate and
Ying Li and
Zhifu Sun and
Xianfeng Chen and
Jean{-}Pierre A. Kocher},
title = {HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq
data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {280},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-280},
doi = {10.1186/1471-2105-15-280},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YanEKMMLWBLSCK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangATP14,
author = {Lingjian Yang and
Chrysanthi Ainali and
Sophia Tsoka and
Lazaros G. Papageorgiou},
title = {Pathway activity inference for multiclass disease classification through
a mathematical programming optimisation framework},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {390},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0390-2},
doi = {10.1186/S12859-014-0390-2},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangATP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangCF14,
author = {Shengping Yang and
Xiangqin Cui and
Zhide Fang},
title = {BCRgt: a Bayesian cluster regression-based genotyping algorithm for
the samples with copy number alterations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {74},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-74},
doi = {10.1186/1471-2105-15-74},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangDN14,
author = {Tao Yang and
Hong{-}Wen Deng and
Tianhua Niu},
title = {Critical assessment of coalescent simulators in modeling recombination
hotspots in genomic sequences},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {3},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-3},
doi = {10.1186/1471-2105-15-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangDN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangWGKPZ14,
author = {Peng Yang and
Min Wu and
Jing Guo and
Chee Keong Kwoh and
Teresa M. Przytycka and
Jie Zheng},
title = {LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination
hotspots by analysis of {DNA} sequence polymorphisms},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {48},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-48},
doi = {10.1186/1471-2105-15-48},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YangWGKPZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YanoMAYK14,
author = {Masahiro Yano and
Hiroshi Mori and
Yutaka Akiyama and
Takuji Yamada and
Ken Kurokawa},
title = {{CLAST:} {CUDA} implemented large-scale alignment search tool},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {406},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0406-y},
doi = {10.1186/S12859-014-0406-Y},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YanoMAYK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YilmazelHSSSPM14,
author = {Bahar Yilmazel and
Yanhui Hu and
Frederic Sigoillot and
Jennifer A. Smith and
Caroline E. Shamu and
Norbert Perrimon and
Stephanie E. Mohr},
title = {Online {GESS:} prediction of miRNA-like off-target effects in large-scale
RNAi screen data by seed region analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {192},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-192},
doi = {10.1186/1471-2105-15-192},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YilmazelHSSSPM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Yim-imSSHMTSC14,
author = {Wannarat Yim{-}im and
Orathai Sawatdichaikul and
Suwanna Semsri and
Natharinee Horata and
Wanwimon Mokmak and
Sissades Tongsima and
Apichart Suksamrarn and
Kiattawee Choowongkomon},
title = {Computational analyses of curcuminoid analogs against kinase domain
of {HER2}},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {261},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-261},
doi = {10.1186/1471-2105-15-261},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Yim-imSSHMTSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YourstoneLDJ14,
author = {Scott M. Yourstone and
Derek S. Lundberg and
Jeffery L. Dangl and
Corbin D. Jones},
title = {MT-Toolbox: improved amplicon sequencing using molecule tags},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {284},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-284},
doi = {10.1186/1471-2105-15-284},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YourstoneLDJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuHYYYS14,
author = {Dong{-}Jun Yu and
Jun Hu and
Hui Yan and
Xibei Yang and
Jing{-}Yu Yang and
Hong{-}Bin Shen},
title = {Enhancing protein-vitamin binding residues prediction by multiple
heterogeneous subspace SVMs ensemble},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {297},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-297},
doi = {10.1186/1471-2105-15-297},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuHYYYS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YunY14,
author = {Sajung Yun and
Sijung Yun},
title = {Masking as an effective quality control method for next-generation
sequencing data analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {382},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0382-2},
doi = {10.1186/S12859-014-0382-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YunY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZakharovTST14,
author = {Sergii Zakharov and
Garrett H. K. Teoh and
Agus Salim and
Anbupalam Thalamuthu},
title = {A method to incorporate prior information into score test for genetic
association studies},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {24},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-24},
doi = {10.1186/1471-2105-15-24},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZakharovTST14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZamaniSMHDLHG14,
author = {Neda Zamani and
G{\"{o}}rel Sundstr{\"{o}}m and
Jennifer R. S. Meadows and
Marc P. H{\"{o}}ppner and
Jacques Dainat and
Henrik Lantz and
Brian J. Haas and
Manfred G. Grabherr},
title = {A universal genomic coordinate translator for comparative genomics},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {227},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-227},
doi = {10.1186/1471-2105-15-227},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZamaniSMHDLHG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZaslavskiyBDDS14,
author = {Mikhail Zaslavskiy and
Claudia Bertonati and
Philippe Duchateau and
Aymeric Duclert and
George H. Silva},
title = {Efficient design of meganucleases using a machine learning approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {191},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-191},
doi = {10.1186/1471-2105-15-191},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZaslavskiyBDDS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangDLZJW14,
author = {Xin Zhang and
Renqian Du and
Shilin Li and
Feng Zhang and
Li Jin and
Hongyan Wang},
title = {Evaluation of copy number variation detection for a {SNP} array platform},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {50},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-50},
doi = {10.1186/1471-2105-15-50},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangDLZJW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangDOY14,
author = {Xiao{-}Fei Zhang and
Dao{-}Qing Dai and
Le Ou{-}Yang and
Hong Yan},
title = {Detecting overlapping protein complexes based on a generative model
with functional and topological properties},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {186},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-186},
doi = {10.1186/1471-2105-15-186},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangDOY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangPRBCL14,
author = {Yun Zhang and
Charles A. Phillips and
Gary L. Rogers and
Erich J. Baker and
Elissa J. Chesler and
Michael A. Langston},
title = {On finding bicliques in bipartite graphs: a novel algorithm and its
application to the integration of diverse biological data types},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {110},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-110},
doi = {10.1186/1471-2105-15-110},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangPRBCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangWZZ14,
author = {Junhua Zhang and
Ling{-}Yun Wu and
Xiang{-}Sun Zhang and
Shihua Zhang},
title = {Discovery of co-occurring driver pathways in cancer},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {271},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-271},
doi = {10.1186/1471-2105-15-271},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWZZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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