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@inproceedings{DBLP:conf/recomb/AdamS09,
  author       = {Zaky Adam and
                  David Sankoff},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {A Statistically Fair Comparison of Ancestral Genome Reconstructions,
                  Based on Breakpoint and Rearrangement Distances},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {193--204},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_16},
  doi          = {10.1007/978-3-642-04744-2\_16},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/AdamS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AngibaudFTV09,
  author       = {S{\'{e}}bastien Angibaud and
                  Guillaume Fertin and
                  Annelyse Th{\'{e}}venin and
                  St{\'{e}}phane Vialette},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Pseudo Boolean Programming for Partially Ordered Genomes},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {126--137},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_11},
  doi          = {10.1007/978-3-642-04744-2\_11},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/AngibaudFTV09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BlinS09,
  author       = {Guillaume Blin and
                  Jens Stoye},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Finding Nested Common Intervals Efficiently},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {59--69},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_6},
  doi          = {10.1007/978-3-642-04744-2\_6},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/BlinS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BragaS09,
  author       = {Mar{\'{\i}}lia D. V. Braga and
                  Jens Stoye},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Counting All {DCJ} Sorting Scenarios},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {36--47},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_4},
  doi          = {10.1007/978-3-642-04744-2\_4},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/BragaS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChauveHSY09,
  author       = {C{\'{e}}dric Chauve and
                  Utz{-}Uwe Haus and
                  Tamon Stephen and
                  Vivija P. You},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral
                  Genome Reconstruction},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {48--58},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_5},
  doi          = {10.1007/978-3-642-04744-2\_5},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ChauveHSY09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DelgadoLM09,
  author       = {Jo{\~{a}}o Delgado and
                  In{\^{e}}s Lynce and
                  Vasco M. Manquinho},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Computing the Summed Adjacency Disruption Number between Two Genomes
                  with Duplicate Genes Using Pseudo-Boolean Optimization},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {138--149},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_12},
  doi          = {10.1007/978-3-642-04744-2\_12},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/DelgadoLM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HouRBHM09,
  author       = {Minmei Hou and
                  Cathy Riemer and
                  Piotr Berman and
                  Ross C. Hardison and
                  Webb Miller},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Aligning Two Genomic Sequences That Contain Duplications},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {98--110},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_9},
  doi          = {10.1007/978-3-642-04744-2\_9},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HouRBHM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HsuZHM09,
  author       = {Chih{-}Hao Hsu and
                  Yu Zhang and
                  Ross C. Hardison and
                  Webb Miller},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Whole-Genome Analysis of Gene Conversion Events},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {181--192},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_15},
  doi          = {10.1007/978-3-642-04744-2\_15},
  timestamp    = {Thu, 23 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/HsuZHM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiuC09,
  author       = {Xiao Liu and
                  Neil D. Clarke},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Transcription Factor Binding Probabilities in Orthologous Promoters:
                  An Alignment-Free Approach to the Inference of Functional Regulatory
                  Targets},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {229--240},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_19},
  doi          = {10.1007/978-3-642-04744-2\_19},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LiuC09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MedvedevS09,
  author       = {Paul Medvedev and
                  Jens Stoye},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Rearrangement Models and Single-Cut Operations},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {84--97},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_8},
  doi          = {10.1007/978-3-642-04744-2\_8},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/MedvedevS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/OuangraouaB09,
  author       = {A{\"{\i}}da Ouangraoua and
                  Anne Bergeron},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Parking Functions, Labeled Trees and {DCJ} Sorting Scenarios},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {24--35},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_3},
  doi          = {10.1007/978-3-642-04744-2\_3},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/OuangraouaB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PoissonBB09,
  author       = {Guylaine Poisson and
                  Mahdi Belcaid and
                  Anne Bergeron},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Comparative Genomics and Extensive Recombinations in Phage Communities},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {205--216},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_17},
  doi          = {10.1007/978-3-642-04744-2\_17},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PoissonBB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RichardsonW09,
  author       = {Dale N. Richardson and
                  Thomas Wiehe},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Properties of Sequence Conservation in Upstream Regulatory and Protein
                  Coding Sequences among Paralogs in \emph{Arabidopsis thaliana}},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {217--228},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_18},
  doi          = {10.1007/978-3-642-04744-2\_18},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/RichardsonW09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongZVM09,
  author       = {Giltae Song and
                  Louxin Zhang and
                  Tom{\'{a}}s Vinar and
                  Webb Miller},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Inferring the Recent Duplication History of a Gene Cluster},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {111--125},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_10},
  doi          = {10.1007/978-3-642-04744-2\_10},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SongZVM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Tannier09,
  author       = {Eric Tannier},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Yeast Ancestral Genome Reconstructions: The Possibilities of Computational
                  Methods},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {1--12},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_1},
  doi          = {10.1007/978-3-642-04744-2\_1},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Tannier09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TullerBKR09,
  author       = {Tamir Tuller and
                  Hadas Birin and
                  Martin Kupiec and
                  Eytan Ruppin},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences:
                  Computational Issues and Biological Examples},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {164--180},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_14},
  doi          = {10.1007/978-3-642-04744-2\_14},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/TullerBKR09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VinarBSS09,
  author       = {Tom{\'{a}}s Vinar and
                  Brona Brejov{\'{a}} and
                  Giltae Song and
                  Adam C. Siepel},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Reconstructing Histories of Complex Gene Clusters on a Phylogeny},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {150--163},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_13},
  doi          = {10.1007/978-3-642-04744-2\_13},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/VinarBSS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Xu09,
  author       = {Andrew Wei Xu},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {{DCJ} Median Problems on Linear Multichromosomal Genomes: Graph Representation
                  and Fast Exact Solutions},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {70--83},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_7},
  doi          = {10.1007/978-3-642-04744-2\_7},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Xu09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangS09,
  author       = {Zhenyu Yang and
                  David Sankoff},
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Natural Parameter Values for Generalized Gene Adjacency},
  booktitle    = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  pages        = {13--23},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2\_2},
  doi          = {10.1007/978-3-642-04744-2\_2},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/YangS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2009cg,
  editor       = {Francesca D. Ciccarelli and
                  Istv{\'{a}}n Mikl{\'{o}}s},
  title        = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
                  Hungary, September 27-29, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5817},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04744-2},
  doi          = {10.1007/978-3-642-04744-2},
  isbn         = {978-3-642-04743-5},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/2009cg.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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