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@inproceedings{DBLP:conf/recomb/BaaijensSS20,
  author       = {Jasmijn A. Baaijens and
                  Leen Stougie and
                  Alexander Sch{\"{o}}nhuth},
  editor       = {Russell Schwartz},
  title        = {Strain-Aware Assembly of Genomes from Mixed Samples Using Flow Variation
                  Graphs},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {221--222},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_14},
  doi          = {10.1007/978-3-030-45257-5\_14},
  timestamp    = {Tue, 21 Apr 2020 12:14:30 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BaaijensSS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BaharavKTS20,
  author       = {Tavor Z. Baharav and
                  Govinda M. Kamath and
                  David N. C. Tse and
                  Ilan Shomorony},
  editor       = {Russell Schwartz},
  title        = {Spectral Jaccard Similarity: {A} New Approach to Estimating Pairwise
                  Sequence Alignments},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {223--225},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_15},
  doi          = {10.1007/978-3-030-45257-5\_15},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BaharavKTS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BankevichP20,
  author       = {Anton Bankevich and
                  Pavel A. Pevzner},
  editor       = {Russell Schwartz},
  title        = {MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {226--228},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_16},
  doi          = {10.1007/978-3-030-45257-5\_16},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BankevichP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BohnenkamperBDS20,
  author       = {Leonard Bohnenk{\"{a}}mper and
                  Mar{\'{\i}}lia D. V. Braga and
                  Daniel Doerr and
                  Jens Stoye},
  editor       = {Russell Schwartz},
  title        = {Computing the Rearrangement Distance of Natural Genomes},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {3--18},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_1},
  doi          = {10.1007/978-3-030-45257-5\_1},
  timestamp    = {Tue, 16 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BohnenkamperBDS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BorgsmullerBMGL20,
  author       = {Nico Borgsm{\"{u}}ller and
                  Jos{\'{e}} Bonet and
                  Francesco Marass and
                  Abel Gonzalez{-}Perez and
                  N{\'{u}}ria L{\'{o}}pez{-}Bigas and
                  Niko Beerenwinkel},
  editor       = {Russell Schwartz},
  title        = {Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {229--230},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_17},
  doi          = {10.1007/978-3-030-45257-5\_17},
  timestamp    = {Mon, 10 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/BorgsmullerBMGL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BornMOCM20,
  author       = {Jannis Born and
                  Matteo Manica and
                  Ali Oskooei and
                  Joris Cadow and
                  Mar{\'{\i}}a Rodr{\'{\i}}guez Mart{\'{\i}}nez},
  editor       = {Russell Schwartz},
  title        = {PaccMann\({}^{\mbox{RL}}\): Designing Anticancer Drugs From Transcriptomic
                  Data via Reinforcement Learning},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {231--233},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_18},
  doi          = {10.1007/978-3-030-45257-5\_18},
  timestamp    = {Tue, 16 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BornMOCM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BoseBCPD20,
  author       = {Aritra Bose and
                  Myson C. Burch and
                  Agniva Chowdhury and
                  Peristera Paschou and
                  Petros Drineas},
  editor       = {Russell Schwartz},
  title        = {CluStrat: {A} Structure Informed Clustering Strategy for Population
                  Stratification},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {234--236},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_19},
  doi          = {10.1007/978-3-030-45257-5\_19},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BoseBCPD20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BrandesLL20,
  author       = {Nadav Brandes and
                  Nathan Linial and
                  Michal Linial},
  editor       = {Russell Schwartz},
  title        = {{PWAS:} Proteome-Wide Association Study},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {237--239},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_20},
  doi          = {10.1007/978-3-030-45257-5\_20},
  timestamp    = {Mon, 04 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BrandesLL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CaggianoCGMBLDZ20,
  author       = {Christa Caggiano and
                  Barbara Celona and
                  Fleur Garton and
                  Joel Mefford and
                  Brian Black and
                  Catherine Lomen{-}Hoerth and
                  Andrew Dahl and
                  Noah Zaitlen},
  editor       = {Russell Schwartz},
  title        = {Estimating the Rate of Cell Type Degeneration from Epigenetic Sequencing
                  of Cell-Free {DNA}},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {240--242},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_21},
  doi          = {10.1007/978-3-030-45257-5\_21},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/CaggianoCGMBLDZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CaylakC20,
  author       = {Gizem Caylak and
                  A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
  editor       = {Russell Schwartz},
  title        = {Potpourri: An Epistasis Test Prioritization Algorithm via Diverse
                  {SNP} Selection},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {243--244},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_22},
  doi          = {10.1007/978-3-030-45257-5\_22},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/CaylakC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Cho0KB20,
  author       = {Hyunghoon Cho and
                  Sean Simmons and
                  Ryan Kim and
                  Bonnie Berger},
  editor       = {Russell Schwartz},
  title        = {Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility
                  Trade-Offs},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {245--247},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_23},
  doi          = {10.1007/978-3-030-45257-5\_23},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Cho0KB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DizajiCH20,
  author       = {Kamran Ghasedi Dizaji and
                  Wei Chen and
                  Heng Huang},
  editor       = {Russell Schwartz},
  title        = {Deep Large-Scale Multi-task Learning Network for Gene Expression Inference},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {19--36},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_2},
  doi          = {10.1007/978-3-030-45257-5\_2},
  timestamp    = {Thu, 09 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/DizajiCH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EkimBO20,
  author       = {Baris Ekim and
                  Bonnie Berger and
                  Yaron Orenstein},
  editor       = {Russell Schwartz},
  title        = {A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal
                  Universal Hitting Sets},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {37--53},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_3},
  doi          = {10.1007/978-3-030-45257-5\_3},
  timestamp    = {Mon, 04 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/EkimBO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EmeryHNK20,
  author       = {Kristen Emery and
                  Syamand Hasam and
                  William Stafford Noble and
                  Uri Keich},
  editor       = {Russell Schwartz},
  title        = {Multiple Competition-Based {FDR} Control and Its Application to Peptide
                  Detection},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {54--71},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_4},
  doi          = {10.1007/978-3-030-45257-5\_4},
  timestamp    = {Mon, 04 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/EmeryHNK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GaoW20,
  author       = {Chao Gao and
                  Joshua D. Welch},
  editor       = {Russell Schwartz},
  title        = {Iterative Refinement of Cellular Identity from Single-Cell Data Using
                  Online Learning},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {248--250},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_24},
  doi          = {10.1007/978-3-030-45257-5\_24},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/GaoW20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GeWAXB20,
  author       = {Songwei Ge and
                  Haohan Wang and
                  Amir Alavi and
                  Eric P. Xing and
                  Ziv Bar{-}Joseph},
  editor       = {Russell Schwartz},
  title        = {Supervised Adversarial Alignment of Single-Cell RNA-seq Data},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {72--87},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_5},
  doi          = {10.1007/978-3-030-45257-5\_5},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/GeWAXB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuoWMWH20,
  author       = {Yuzhi Guo and
                  Jiaxiang Wu and
                  Hehuan Ma and
                  Sheng Wang and
                  Junzhou Huang},
  editor       = {Russell Schwartz},
  title        = {Bagging {MSA} Learning: Enhancing Low-Quality {PSSM} with Deep Learning
                  for Accurate Protein Structure Property Prediction},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {88--103},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_6},
  doi          = {10.1007/978-3-030-45257-5\_6},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/GuoWMWH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HristovC020,
  author       = {Borislav H. Hristov and
                  Bernard Chazelle and
                  Mona Singh},
  editor       = {Russell Schwartz},
  title        = {A Guided Network Propagation Approach to Identify Disease Genes that
                  Combines Prior and New Information},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {251--252},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_25},
  doi          = {10.1007/978-3-030-45257-5\_25},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HristovC020.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/IvanovBMKRV20,
  author       = {Pesho Ivanov and
                  Benjamin Bichsel and
                  Harun Mustafa and
                  Andr{\'{e}} Kahles and
                  Gunnar R{\"{a}}tsch and
                  Martin T. Vechev},
  editor       = {Russell Schwartz},
  title        = {AStarix: Fast and Optimal Sequence-to-Graph Alignment},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {104--119},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_7},
  doi          = {10.1007/978-3-030-45257-5\_7},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/IvanovBMKRV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JohnsonBHPPS20,
  author       = {Ruth Johnson and
                  Kathryn S. Burch and
                  Kangcheng Hou and
                  Mario Paciuc and
                  Bogdan Pasaniuc and
                  Sriram Sankararaman},
  editor       = {Russell Schwartz},
  title        = {A Scalable Method for Estimating the Regional Polygenicity of Complex
                  Traits},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {253--254},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_26},
  doi          = {10.1007/978-3-030-45257-5\_26},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/JohnsonBHPPS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JosephPP20,
  author       = {Tyler A. Joseph and
                  Amey P. Pasarkar and
                  Itsik Pe'er},
  editor       = {Russell Schwartz},
  title        = {Efficient and Accurate Inference of Microbial Trajectories from Longitudinal
                  Count Data},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {255--256},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_27},
  doi          = {10.1007/978-3-030-45257-5\_27},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/JosephPP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LaPierreTHHHE20,
  author       = {Nathan LaPierre and
                  Kodi Taraszka and
                  Helen Huang and
                  Rosemary He and
                  Farhad Hormozdiari and
                  Eleazar Eskin},
  editor       = {Russell Schwartz},
  title        = {Identifying Causal Variants by Fine Mapping Across Multiple Studies},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {257--258},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_28},
  doi          = {10.1007/978-3-030-45257-5\_28},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LaPierreTHHHE20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LegriedMWR20,
  author       = {Brandon Legried and
                  Erin K. Molloy and
                  Tandy J. Warnow and
                  S{\'{e}}bastien Roch},
  editor       = {Russell Schwartz},
  title        = {Polynomial-Time Statistical Estimation of Species Trees Under Gene
                  Duplication and Loss},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {120--135},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_8},
  doi          = {10.1007/978-3-030-45257-5\_8},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LegriedMWR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiWSJZZ20,
  author       = {Shuya Li and
                  Fangping Wan and
                  Hantao Shu and
                  Tao Jiang and
                  Dan Zhao and
                  Jianyang Zeng},
  editor       = {Russell Schwartz},
  title        = {{MONN:} {A} Multi-objective Neural Network for Predicting Pairwise
                  Non-covalent Interactions and Binding Affinities Between Compounds
                  and Proteins},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {259--260},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_29},
  doi          = {10.1007/978-3-030-45257-5\_29},
  timestamp    = {Wed, 02 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LiWSJZZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoVDS0QZ020,
  author       = {Yunan Luo and
                  Lam Vo and
                  Hantian Ding and
                  Yufeng Su and
                  Yang Liu and
                  Wesley Wei Qian and
                  Huimin Zhao and
                  Jian Peng},
  editor       = {Russell Schwartz},
  title        = {Evolutionary Context-Integrated Deep Sequence Modeling for Protein
                  Engineering},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {261--263},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_30},
  doi          = {10.1007/978-3-030-45257-5\_30},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LuoVDS0QZ020.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaiM20,
  author       = {Uyen Mai and
                  Siavash Mirarab},
  editor       = {Russell Schwartz},
  title        = {Log Transformation Improves Dating of Phylogenies},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {264--265},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_31},
  doi          = {10.1007/978-3-030-45257-5\_31},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MaiM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MitraZMH20,
  author       = {Sneha Mitra and
                  Jianling Zhong and
                  David M. MacAlpine and
                  Alexander J. Hartemink},
  editor       = {Russell Schwartz},
  title        = {RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility
                  Data to Elucidate Genome-Wide Chromatin Occupancy},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {136--151},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_9},
  doi          = {10.1007/978-3-030-45257-5\_9},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MitraZMH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PaigeBBGE20,
  author       = {Brooks Paige and
                  James Bell and
                  Aur{\'{e}}lien Bellet and
                  Adri{\`{a}} Gasc{\'{o}}n and
                  Daphne Ezer},
  editor       = {Russell Schwartz},
  title        = {Reconstructing Genotypes in Private Genomic Databases from Genetic
                  Risk Scores},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {266--268},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_32},
  doi          = {10.1007/978-3-030-45257-5\_32},
  timestamp    = {Thu, 05 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/PaigeBBGE20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmanM20,
  author       = {Amatur Rahman and
                  Paul Medvedev},
  editor       = {Russell Schwartz},
  title        = {Representation of k-mer Sets Using Spectrum-Preserving String Sets},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {152--168},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_10},
  doi          = {10.1007/978-3-030-45257-5\_10},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/RahmanM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReynaCER20,
  author       = {Matthew A. Reyna and
                  Uthsav Chitra and
                  Rebecca Elyanow and
                  Benjamin J. Raphael},
  editor       = {Russell Schwartz},
  title        = {NetMix: {A} Network-Structured Mixture Model for Reduced-Bias Estimation
                  of Altered Subnetworks},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {169--185},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_11},
  doi          = {10.1007/978-3-030-45257-5\_11},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ReynaCER20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SanaullahZZ20,
  author       = {Ahsan Sanaullah and
                  Degui Zhi and
                  Shaojie Zhang},
  editor       = {Russell Schwartz},
  title        = {d-PBWT: Dynamic Positional Burrows-Wheeler Transform},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {269--270},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_33},
  doi          = {10.1007/978-3-030-45257-5\_33},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SanaullahZZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Sarrazin-Gendron20,
  author       = {Roman Sarrazin{-}Gendron and
                  Hua{-}Ting Yao and
                  Vladimir Reinharz and
                  Carlos G. Oliver and
                  Yann Ponty and
                  J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
  editor       = {Russell Schwartz},
  title        = {Stochastic Sampling of Structural Contexts Improves the Scalability
                  and Accuracy of {RNA} 3D Module Identification},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {186--201},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_12},
  doi          = {10.1007/978-3-030-45257-5\_12},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Sarrazin-Gendron20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SasonCLS20,
  author       = {Itay Sason and
                  Yuexi Chen and
                  Mark D. M. Leiserson and
                  Roded Sharan},
  editor       = {Russell Schwartz},
  title        = {A Mixture Model for Signature Discovery from Sparse Mutation Data},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {271--272},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_34},
  doi          = {10.1007/978-3-030-45257-5\_34},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SasonCLS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SatasZMR20,
  author       = {Gryte Satas and
                  Simone Zaccaria and
                  Geoffrey Mon and
                  Benjamin J. Raphael},
  editor       = {Russell Schwartz},
  title        = {Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained
                  Mutation Losses},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {273},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_35},
  doi          = {10.1007/978-3-030-45257-5\_35},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SatasZMR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangFBLOP20,
  author       = {Yijie Wang and
                  Justin M. Fear and
                  Isabelle Berger and
                  Hangnoh Lee and
                  Brian Oliver and
                  Teresa M. Przytycka},
  editor       = {Russell Schwartz},
  title        = {Reconstruction of Gene Regulatory Networks by Integrating Biological
                  Model and a Recommendation System},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {274--275},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_36},
  doi          = {10.1007/978-3-030-45257-5\_36},
  timestamp    = {Mon, 01 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/WangFBLOP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Zhang020,
  author       = {Ruochi Zhang and
                  Jian Ma},
  editor       = {Russell Schwartz},
  title        = {Probing Multi-way Chromatin Interaction with Hypergraph Representation
                  Learning},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {276--277},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_37},
  doi          = {10.1007/978-3-030-45257-5\_37},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Zhang020.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengKM20,
  author       = {Hongyu Zheng and
                  Carl Kingsford and
                  Guillaume Mar{\c{c}}ais},
  editor       = {Russell Schwartz},
  title        = {Lower Density Selection Schemes via Small Universal Hitting Sets with
                  Short Remaining Path Length},
  booktitle    = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  pages        = {202--217},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5\_13},
  doi          = {10.1007/978-3-030-45257-5\_13},
  timestamp    = {Wed, 22 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ZhengKM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2020,
  editor       = {Russell Schwartz},
  title        = {Research in Computational Molecular Biology - 24th Annual International
                  Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12074},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-45257-5},
  doi          = {10.1007/978-3-030-45257-5},
  isbn         = {978-3-030-45256-8},
  timestamp    = {Tue, 21 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/2020.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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