Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDSearch dblp for Publications
export results for "toc:db/journals/bioinformatics/bioinformatics35.bht:"
more than 1000 matches, exporting first 1000 hits only!
download as .bib file
@article{DBLP:journals/bioinformatics/AbdelaalHULKRM19,
author = {Tamim Abdelaal and
Thomas H{\"{o}}llt and
Vincent van Unen and
Boudewijn P. F. Lelieveldt and
Frits Koning and
Marcel J. T. Reinders and
Ahmed Mahfouz},
title = {CyTOFmerge: integrating mass cytometry data across multiple panels},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4063--4071},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz180},
doi = {10.1093/BIOINFORMATICS/BTZ180},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbdelaalHULKRM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbneyE19,
author = {Mark Abney and
Aisha ElSherbiny},
title = {Kinpute: using identity by descent to improve genotype imputation},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4321--4326},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz221},
doi = {10.1093/BIOINFORMATICS/BTZ221},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbneyE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbramsZAHLDRCP19,
author = {Zachary B. Abrams and
Lin Zhang and
Lynne V. Abruzzo and
Nyla A. Heerema and
Suli Li and
Tom Dillon and
Ricky Rodriguez and
Kevin R. Coombes and
Philip R. O. Payne},
title = {CytoGPS: a web-enabled karyotype analysis tool for cytogenetics},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5365--5366},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz520},
doi = {10.1093/BIOINFORMATICS/BTZ520},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbramsZAHLDRCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AggCSVMFCK19,
author = {Bence {\'{A}}gg and
Andrea Cs{\'{a}}sz{\'{a}}r and
M{\'{a}}t{\'{e}} Szalay{-}Beko and
D{\'{a}}niel V. Veres and
R{\'{e}}ka Mizsei and
P{\'{e}}ter Ferdinandy and
P{\'{e}}ter Csermely and
Istv{\'{a}}n A. Kov{\'{a}}cs},
title = {The EntOptLayout Cytoscape plug-in for the efficient visualization
of major protein complexes in protein-protein interaction and signalling
networks},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4490--4492},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz257},
doi = {10.1093/BIOINFORMATICS/BTZ257},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AggCSVMFCK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgiusGR19,
author = {Phaedra Agius and
Heather Geiger and
Nicolas Robine},
title = {{SCANVIS:} a tool for SCoring, ANnotating and VISualizing splice junctions},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4843--4845},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz452},
doi = {10.1093/BIOINFORMATICS/BTZ452},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgiusGR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Aguayo-OrozcoAS19,
author = {Alejandro Aguayo{-}Orozco and
Karine Audouze and
Troels Siggaard and
Robert Barouki and
S{\o}ren Brunak and
Olivier Taboureau},
title = {sAOP: linking chemical stressors to adverse outcomes pathway networks},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5391--5392},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz570},
doi = {10.1093/BIOINFORMATICS/BTZ570},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Aguayo-OrozcoAS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Aguilera-Mendoza19,
author = {Longendri Aguilera{-}Mendoza and
Yovani Marrero{-}Ponce and
Jesus A. Beltran and
Roberto Tellez{-}Ibarra and
Hugo A. Guillen{-}Ramirez and
Carlos A. Brizuela},
title = {Graph-based data integration from bioactive peptide databases of pharmaceutical
interest: toward an organized collection enabling visual network analysis},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4739--4747},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz260},
doi = {10.1093/BIOINFORMATICS/BTZ260},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Aguilera-Mendoza19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AguseQE19,
author = {Nuraini Aguse and
Yuanyuan Qi and
Mohammed El{-}Kebir},
title = {Summarizing the solution space in tumor phylogeny inference by multiple
consensus trees},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i408--i416},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz312},
doi = {10.1093/BIOINFORMATICS/BTZ312},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AguseQE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhmedQMM19,
author = {Syed Faraz Ahmed and
Ahmed A. Quadeer and
David Morales{-}Jim{\'{e}}nez and
Matthew R. McKay},
title = {Sub-dominant principal components inform new vaccine targets for {HIV}
Gag},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3884--3889},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz524},
doi = {10.1093/BIOINFORMATICS/BTZ524},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhmedQMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhmedRB19,
author = {Sumon Ahmed and
Magnus Rattray and
Alexis Boukouvalas},
title = {GrandPrix: scaling up the Bayesian {GPLVM} for single-cell data},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {47--54},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty533},
doi = {10.1093/BIOINFORMATICS/BTY533},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhmedRB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AjanaABHJD19,
author = {Soufiane Ajana and
Niyazi Acar and
Lionel Bretillon and
Boris P. Hejblum and
H{\'{e}}l{\`{e}}ne Jacqmin{-}Gadda and
C{\'{e}}cile Delcourt},
title = {Benefits of dimension reduction in penalized regression methods for
high-dimensional grouped data: a case study in low sample size},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3628--3634},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz135},
doi = {10.1093/BIOINFORMATICS/BTZ135},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AjanaABHJD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Al-AsadiDNS19,
author = {Hussein Al{-}Asadi and
Kushal K. Dey and
John Novembre and
Matthew Stephens},
title = {Inference and visualization of {DNA} damage patterns using a grade
of membership model},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1292--1298},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty779},
doi = {10.1093/BIOINFORMATICS/BTY779},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Al-AsadiDNS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlQuraishi19,
author = {Mohammed AlQuraishi},
title = {AlphaFold at {CASP13}},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4862--4865},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz422},
doi = {10.1093/BIOINFORMATICS/BTZ422},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlQuraishi19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlazmiKSDG19,
author = {Meshari Alazmi and
Hiroyuki Kuwahara and
Othman Soufan and
Lizhong Ding and
Xin Gao},
title = {Systematic selection of chemical fingerprint features improves the
Gibbs energy prediction of biochemical reactions},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2634--2643},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1035},
doi = {10.1093/BIOINFORMATICS/BTY1035},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlazmiKSDG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlbayrakKGF19,
author = {Levent Albayrak and
Kamil Khanipov and
George Golovko and
Yuriy Fofanov},
title = {Broom: application for non-redundant storage of high throughput sequencing
data},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {143--145},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty580},
doi = {10.1093/BIOINFORMATICS/BTY580},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlbayrakKGF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlfayateCSB19,
author = {Alvaro Alfayate and
Carlos Rodriguez Caceres and
Helena G. Dos Santos and
Ugo Bastolla},
title = {Predicted dynamical couplings of protein residues characterize catalysis,
transport and allostery},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4971--4978},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz301},
doi = {10.1093/BIOINFORMATICS/BTZ301},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlfayateCSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AliHDLJ19,
author = {Mehdi Ali and
Charles Tapley Hoyt and
Daniel Domingo{-}Fern{\'{a}}ndez and
Jens Lehmann and
Hajira Jabeen},
title = {BioKEEN: a library for learning and evaluating biological knowledge
graph embeddings},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3538--3540},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz117},
doi = {10.1093/BIOINFORMATICS/BTZ117},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AliHDLJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlonEJRVTCKG19,
author = {Shahar Alon and
Eli Eisenberg and
Jasmine Jacob{-}Hirsch and
Gideon Rechavi and
Gad Vatine and
Reiko Toyama and
Steven L. Coon and
David C. Klein and
Yoav Gothilf},
title = {Corrigendum to: {A} new cis-acting regulatory element driving gene
expression in the zebrafish pineal gland},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4206},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz410},
doi = {10.1093/BIOINFORMATICS/BTZ410},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlonEJRVTCKG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlsammanIH19,
author = {Alsamman M. Alsamman and
Shafik D. Ibrahim and
Aladdin Hamwieh},
title = {KASPspoon: an in vitro and in silico {PCR} analysis tool for high-throughput
{SNP} genotyping},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3187--3190},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz004},
doi = {10.1093/BIOINFORMATICS/BTZ004},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlsammanIH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlserHKMA19,
author = {Mohammed Alser and
Hasan Hassan and
Akash Kumar and
Onur Mutlu and
Can Alkan},
title = {Shouji: a fast and efficient pre-alignment filter for sequence alignment},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4255--4263},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz234},
doi = {10.1093/BIOINFORMATICS/BTZ234},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlserHKMA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvaL19,
author = {Vikram Alva and
Andrei N. Lupas},
title = {Histones predate the split between bacteria and archaea},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2349--2353},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1000},
doi = {10.1093/BIOINFORMATICS/BTY1000},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvaL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvarezPML19,
author = {Roberto Vera Alvarez and
Lorinc S{\'{a}}ndor Pongor and
Leonardo Mari{\~{n}}o{-}Ram{\'{\i}}rez and
David Landsman},
title = {TPMCalculator: one-step software to quantify mRNA abundance of genomic
features},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1960--1962},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty896},
doi = {10.1093/BIOINFORMATICS/BTY896},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvarezPML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmgadEHAEESSISA19,
author = {Mohamed Amgad and
Habiba Elfandy and
Hagar Hussein and
Lamees A. Atteya and
Mai A. T. Elsebaie and
Lamia S. Abo Elnasr and
Rokia Adel Sakr and
Hazem S. E. Salem and
Ahmed F. Ismail and
Anas M. Saad and
Joumana Ahmed and
Maha A. T. Elsebaie and
Mustafijur Rahman and
Inas A. Ruhban and
Nada M. Elgazar and
Yahya Alagha and
Mohamed H. Osman and
Ahmed M. Alhusseiny and
Mariam M. Khalaf and
Abo{-}Alela F. Younes and
Ali Abdulkarim and
Duaa M. Younes and
Ahmed M. Gadallah and
Ahmad M. Elkashash and
Salma Y. Fala and
Basma M. Zaki and
Jonathan D. Beezley and
Deepak Roy Chittajallu and
David Manthey and
David A. Gutman and
Lee A. D. Cooper},
title = {Structured crowdsourcing enables convolutional segmentation of histology
images},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3461--3467},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz083},
doi = {10.1093/BIOINFORMATICS/BTZ083},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmgadEHAEESSISA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AminABC19,
author = {Viren Amin and
Didem Aga{\c{c}} and
Spencer D. Barnes and
Murat Can Cobanoglu},
title = {Accurate differential analysis of transcription factor activity from
gene expression},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5018--5029},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz398},
doi = {10.1093/BIOINFORMATICS/BTZ398},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AminABC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnatskiyRGAMB19,
author = {Evgeny Anatskiy and
Devon Patrick Ryan and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Laura Arrigoni and
Thomas Manke and
Ulrike B{\"{o}}nisch},
title = {Parkour {LIMS:} high-quality sample preparation in next generation
sequencing},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1422--1424},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty820},
doi = {10.1093/BIOINFORMATICS/BTY820},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnatskiyRGAMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndrewsH19,
author = {Tallulah S. Andrews and
Martin Hemberg},
title = {M3Drop: dropout-based feature selection for scRNASeq},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2865--2867},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1044},
doi = {10.1093/BIOINFORMATICS/BTY1044},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndrewsH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnsarifarW19,
author = {Javad Ansarifar and
Lizhi Wang},
title = {New algorithms for detecting multi-effect and multi-way epistatic
interactions},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5078--5085},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz463},
doi = {10.1093/BIOINFORMATICS/BTZ463},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnsarifarW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntczakZZRBS19,
author = {Maciej Antczak and
Marcin Zablocki and
Tomasz Zok and
Agnieszka Rybarczyk and
Jacek Blazewicz and
Marta Szachniuk},
title = {RNAvista: a webserver to assess {RNA} secondary structures with non-canonical
base pairs},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {152--155},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty609},
doi = {10.1093/BIOINFORMATICS/BTY609},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntczakZZRBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ApaolazaVP19,
author = {I{\~{n}}igo Apaolaza and
Luis Vitores Valcarcel and
Francisco J. Planes},
title = {gMCS: fast computation of genetic minimal cut sets in large networks},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {535--537},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty656},
doi = {10.1093/BIOINFORMATICS/BTY656},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ApaolazaVP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AparicioRMS19,
author = {David Oliveira Apar{\'{\i}}cio and
Pedro Ribeiro and
Tijana Milenkovic and
Fernando Silva},
title = {Temporal network alignment via GoT-WAVE},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3527--3529},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz119},
doi = {10.1093/BIOINFORMATICS/BTZ119},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AparicioRMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArconMALDATFM19,
author = {Juan Pablo Arcon and
Carlos P. Modenutti and
Demian Avenda{\~{n}}o and
Elias D. L{\'{o}}pez and
Lucas A. Defelipe and
Francesca Alessandra Ambrosio and
Adrian Gustavo Turjanski and
Stefano Forli and
Marcelo A. Marti},
title = {AutoDock Bias: improving binding mode prediction and virtual screening
using known protein-ligand interactions},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3836--3838},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz152},
doi = {10.1093/BIOINFORMATICS/BTZ152},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArconMALDATFM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArdakanyAL19,
author = {Abbas Roayaei Ardakany and
Ferhat Ay and
Stefano Lonardi},
title = {Selfish: discovery of differential chromatin interactions via a self-similarity
measure},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i145--i153},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz362},
doi = {10.1093/BIOINFORMATICS/BTZ362},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArdakanyAL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArefeenXJ19,
author = {Ashraful Arefeen and
Xinshu Xiao and
Tao Jiang},
title = {DeepPASTA: deep neural network based polyadenylation site analysis},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4577--4585},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz283},
doi = {10.1093/BIOINFORMATICS/BTZ283},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArefeenXJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArendseeLSSDW19,
author = {Zebulun Arendsee and
Jing Li and
Urminder Singh and
Arun S. Seetharam and
Karin S. Dorman and
Eve Syrkin Wurtele},
title = {phylostratr: a framework for phylostratigraphy},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3617--3627},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz171},
doi = {10.1093/BIOINFORMATICS/BTZ171},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArendseeLSSDW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Arnedo-PacMMGL19,
author = {Claudia Arnedo{-}Pac and
Loris Mularoni and
Ferran Mui{\~{n}}os and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {OncodriveCLUSTL: a sequence-based clustering method to identify cancer
drivers},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4788--4790},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz501},
doi = {10.1093/BIOINFORMATICS/BTZ501},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Arnedo-PacMMGL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Arnedo-PacMMGL19a,
author = {Claudia Arnedo{-}Pac and
Loris Mularoni and
Ferran Mui{\~{n}}os and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {OncodriveCLUSTL: a sequence-based clustering method to identify cancer
drivers},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5396},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz588},
doi = {10.1093/BIOINFORMATICS/BTZ588},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Arnedo-PacMMGL19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsgariGMM19,
author = {Ehsaneddin Asgari and
Kiavash Garakani and
Alice C. McHardy and
Mohammad R. K. Mofrad},
title = {MicroPheno: predicting environments and host phenotypes from 16S rRNA
gene sequencing using a k-mer based representation of shallow sub-samples},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1082},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty652},
doi = {10.1093/BIOINFORMATICS/BTY652},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsgariGMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsgariMLMM19,
author = {Ehsaneddin Asgari and
Philipp C. M{\"{u}}nch and
Till R. Lesker and
Alice C. McHardy and
Mohammad R. K. Mofrad},
title = {DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and
biomarker detection},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2498--2500},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty954},
doi = {10.1093/BIOINFORMATICS/BTY954},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsgariMLMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AshtianiMJ19,
author = {Minoo Ashtiani and
Mehdi Mirzaie and
Mohieddin Jafari},
title = {{CINNA:} an {R/CRAN} package to decipher Central Informative Nodes
in Network Analysis},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1436--1437},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty819},
doi = {10.1093/BIOINFORMATICS/BTY819},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AshtianiMJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AureliMRL19,
author = {Simone Aureli and
Daniele Di Marino and
Stefano Raniolo and
Vittorio Limongelli},
title = {{DDT} - Drug Discovery Tool: a fast and intuitive graphics user interface
for docking and molecular dynamics analysis},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5328--5330},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz543},
doi = {10.1093/BIOINFORMATICS/BTZ543},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AureliMRL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AydinABC19,
author = {Zafer Aydin and
Nuh Azginoglu and
Halil Ibrahim Bilgin and
Mete Celik},
title = {Developing structural profile matrices for protein secondary structure
and solvent accessibility prediction},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4004--4010},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz238},
doi = {10.1093/BIOINFORMATICS/BTZ238},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AydinABC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaaijensRKSS19,
author = {Jasmijn A. Baaijens and
Bastiaan Van der Roest and
Johannes K{\"{o}}ster and
Leen Stougie and
Alexander Sch{\"{o}}nhuth},
title = {Full-length de novo viral quasispecies assembly through variation
graph construction},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5086--5094},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz443},
doi = {10.1093/BIOINFORMATICS/BTZ443},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaaijensRKSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaaijensS19,
author = {Jasmijn A. Baaijens and
Alexander Sch{\"{o}}nhuth},
title = {Overlap graph-based generation of haplotigs for diploids and polyploids},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4281--4289},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz255},
doi = {10.1093/BIOINFORMATICS/BTZ255},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaaijensS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BabaianTLGKM19,
author = {Artem Babaian and
I. Richard Thompson and
Jake Lever and
Liane Gagnier and
Mohammad M. Karimi and
Dixie L. Mager},
title = {{LIONS:} analysis suite for detecting and quantifying transposable
element initiated transcription from RNA-seq},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3839--3841},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz130},
doi = {10.1093/BIOINFORMATICS/BTZ130},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BabaianTLGKM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BadgeleyLGSZSLO19,
author = {Marcus A. Badgeley and
Manway Liu and
Benjamin S. Glicksberg and
Mark M. Shervey and
John R. Zech and
Khader Shameer and
Joseph Lehar and
Eric K. Oermann and
Michael V. McConnell and
Thomas M. Snyder and
Joel T. Dudley},
title = {{CANDI:} an {R} package and Shiny app for annotating radiographs and
evaluating computer-aided diagnosis},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1610--1612},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty855},
doi = {10.1093/BIOINFORMATICS/BTY855},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BadgeleyLGSZSLO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaiMW19,
author = {Xiangqi Bai and
Liang Ma and
Lin Wan},
title = {Statistical test of structured continuous trees based on discordance
matrix},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4962--4970},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz425},
doi = {10.1093/BIOINFORMATICS/BTZ425},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaiMW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiniHHMFT19,
author = {Federico Baldini and
Almut Heinken and
Laurent Heirendt and
Stefan{\'{\i}}a Magn{\'{u}}sd{\'{o}}ttir and
Ronan M. T. Fleming and
Ines Thiele},
title = {The Microbiome Modeling Toolbox: from microbial interactions to personalized
microbial communities},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2332--2334},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty941},
doi = {10.1093/BIOINFORMATICS/BTY941},
timestamp = {Tue, 09 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiniHHMFT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BanfZR19,
author = {Michael Banf and
Kangmei Zhao and
Seung Y. Rhee},
title = {{METACLUSTER} - an {R} package for context-specific expression analysis
of metabolic gene clusters},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3178--3180},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz021},
doi = {10.1093/BIOINFORMATICS/BTZ021},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BanfZR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bansal19,
author = {Vikas Bansal},
title = {Integrating read-based and population-based phasing for dense and
accurate haplotyping of individual genomes},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i242--i248},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz329},
doi = {10.1093/BIOINFORMATICS/BTZ329},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bansal19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaoXSS19,
author = {Ergude Bao and
Fei Xie and
Chang{-}Jin Song and
Dandan Song},
title = {{FLAS:} fast and high-throughput algorithm for PacBio long-read self-correction},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3953--3960},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz206},
doi = {10.1093/BIOINFORMATICS/BTZ206},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaoXSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarashSSZ19,
author = {Eran Barash and
Neta Sal{-}Man and
Sivan Sabato and
Michal Ziv{-}Ukelson},
title = {BacPaCS - Bacterial Pathogenicity Classification via Sparse-SVM},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2001--2008},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty928},
doi = {10.1093/BIOINFORMATICS/BTY928},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarashSSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Barbosa-SilvaBG19,
author = {Adriano Barbosa{-}Silva and
Dorina Bratfalean and
Wei Gu and
Venkata P. Satagopam and
Paul Houston and
Lauren B. Becnel and
Serge Eifes and
Fabien Richard and
Andreas Tielmann and
Sascha Herzinger and
Kavita Rege and
Rudi Balling and
Paul Peeters},
title = {Presenting and sharing clinical data using the eTRIKS Standards Master
Tree for tranSMART},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1562--1565},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty809},
doi = {10.1093/BIOINFORMATICS/BTY809},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Barbosa-SilvaBG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaudinPSP19,
author = {Alexis Baudin and
Soumya Paul and
Cui Su and
Jun Pang},
title = {Controlling large Boolean networks with single-step perturbations},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i558--i567},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz371},
doi = {10.1093/BIOINFORMATICS/BTZ371},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaudinPSP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BazagaVR19,
author = {Adri{\'{a}}n Bazaga and
Alfonso Valencia and
Mar{\'{\i}}a{-}Jos{\'{e}} Rementeria},
title = {{BIOLITMAP:} a web-based geolocated, temporal and thematic visualization
of the evolution of bioinformatics publications},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2518--2520},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty967},
doi = {10.1093/BIOINFORMATICS/BTY967},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BazagaVR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeauxisG19,
author = {Yann Beauxis and
Gr{\'{e}}gory Genta{-}Jouve},
title = {MetWork: a web server for natural products anticipation},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1795--1796},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty864},
doi = {10.1093/BIOINFORMATICS/BTY864},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeauxisG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BechtSCECNCN19,
author = {Etienne Becht and
Yannick Simoni and
Elaine Coustan{-}Smith and
Maximilien Evrard and
Yang Cheng and
Lai Guan Ng and
Dario Campana and
Evan W. Newell},
title = {Reverse-engineering flow-cytometry gating strategies for phenotypic
labelling and high-performance cell sorting},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {301--308},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty491},
doi = {10.1093/BIOINFORMATICS/BTY491},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BechtSCECNCN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BehrouziW19,
author = {Pariya Behrouzi and
Ernst C. Wit},
title = {De novo construction of polyploid linkage maps using discrete graphical
models},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1083--1093},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty777},
doi = {10.1093/BIOINFORMATICS/BTY777},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BehrouziW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BelcastroCMAPGM19,
author = {Vincenzo Belcastro and
Stephane Cano and
Diego Marescotti and
Stefano Acali and
Carine Poussin and
Ignacio Gonzalez{-}Suarez and
Florian Martin and
Filipe Bonjour and
Nikolai V. Ivanov and
Manuel C. Peitsch and
Julia Hoeng},
title = {GladiaTOX: GLobal Assessment of Dose-IndicAtor in TOXicology},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4190--4192},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz187},
doi = {10.1093/BIOINFORMATICS/BTZ187},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BelcastroCMAPGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerchtoldVGCFUT19,
author = {Evi Berchtold and
Martina Vetter and
Melanie G{\"{u}}ndert and
Gergely Csaba and
Christine Fathke and
Susanne E. Ulbrich and
Christoph Thomssen and
Ralf Zimmer and
Eva J. Kantelhardt},
title = {Comparison of six breast cancer classifiers using qPCR},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3412--3420},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz103},
doi = {10.1093/BIOINFORMATICS/BTZ103},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerchtoldVGCFUT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BergstrandND19,
author = {Lee H. Bergstrand and
Josh D. Neufeld and
Andrew C. Doxey},
title = {Pygenprop: a Python library for programmatic exploration and comparison
of organism genome properties},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5063--5065},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz522},
doi = {10.1093/BIOINFORMATICS/BTZ522},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BergstrandND19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BernalBGGH19,
author = {Victor Bernal and
Rainer Bischoff and
Victor Guryev and
Marco Grzegorczyk and
Peter Horvatovich},
title = {Exact hypothesis testing for shrinkage-based Gaussian graphical models},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5011--5017},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz357},
doi = {10.1093/BIOINFORMATICS/BTZ357},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BernalBGGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeyerNHCTPZ19,
author = {Wolfgang Beyer and
Adam M. Novak and
Glenn Hickey and
Jeffrey Chan and
Vanessa Tan and
Benedict Paten and
Daniel R. Zerbino},
title = {Sequence tube maps: making graph genomes intuitive to commuters},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5318--5320},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz597},
doi = {10.1093/BIOINFORMATICS/BTZ597},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeyerNHCTPZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhardwajHSRRKRR19,
author = {Vivek Bhardwaj and
Steffen Heyne and
Katarzyna Sikora and
Leily Rabbani and
Michael Rauer and
Fabian Kilpert and
Andreas S. Richter and
Devon Patrick Ryan and
Thomas Manke},
title = {snakePipes: facilitating flexible, scalable and integrative epigenomic
analysis},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4757--4759},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz436},
doi = {10.1093/BIOINFORMATICS/BTZ436},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhardwajHSRRKRR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bhattacharya19,
author = {Debswapna Bhattacharya},
title = {refineD: improved protein structure refinement using machine learning
based restrained relaxation},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3320--3328},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz101},
doi = {10.1093/BIOINFORMATICS/BTZ101},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bhattacharya19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BianHHCQ19,
author = {Yuanyuan Bian and
Chong He and
Jie Hou and
Jianlin Cheng and
Jing Qiu},
title = {PairedFB: a full hierarchical Bayesian model for paired RNA-seq data
with heterogeneous treatment effects},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {787--797},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty731},
doi = {10.1093/BIOINFORMATICS/BTY731},
timestamp = {Tue, 27 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BianHHCQ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BloiceRH19,
author = {Marcus D. Bloice and
Peter M. Roth and
Andreas Holzinger},
title = {Biomedical image augmentation using Augmentor},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4522--4524},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz259},
doi = {10.1093/BIOINFORMATICS/BTZ259},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BloiceRH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlumK19,
author = {Christopher Blum and
Markus Kollmann},
title = {Neural networks with circular filters enable data efficient inference
of sequence motifs},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3937--3943},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz194},
doi = {10.1093/BIOINFORMATICS/BTZ194},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlumK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonfieldMD19,
author = {James K. Bonfield and
Shane A. McCarthy and
Richard Durbin},
title = {Crumble: reference free lossy compression of sequence quality values},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {337--339},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty608},
doi = {10.1093/BIOINFORMATICS/BTY608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonfieldMD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorgesMGRA19,
author = {Rui Borges and
Jo{\~{a}}o Paulo Machado and
Cid{\'{a}}lia Gomes and
Ana Paula Rocha and
Agostinho Antunes},
title = {Measuring phylogenetic signal between categorical traits and phylogenies},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1862--1869},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty800},
doi = {10.1093/BIOINFORMATICS/BTY800},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorgesMGRA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorzouYS19,
author = {Ahmad Borzou and
Razie Yousefi and
Rovshan G. Sadygov},
title = {Another look at matrix correlations},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4748--4753},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz281},
doi = {10.1093/BIOINFORMATICS/BTZ281},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorzouYS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoseKKEPD19,
author = {Aritra Bose and
Vassilis Kalantzis and
Eugenia{-}Maria Kontopoulou and
Mai Elkady and
Peristera Paschou and
Petros Drineas},
title = {TeraPCA: a fast and scalable software package to study genetic variation
in tera-scale genotypes},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3679--3683},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz157},
doi = {10.1093/BIOINFORMATICS/BTZ157},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoseKKEPD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BourkeGVJKSVASM19,
author = {Peter M. Bourke and
Geert van Geest and
Roeland E. Voorrips and
Johannes Jansen and
Twan Kranenburg and
Arwa Shahin and
Richard G. F. Visser and
Paul Arens and
Marinus J. M. Smulders and
Chris Maliepaard},
title = {polymapR - linkage analysis and genetic map construction from {F1}
populations of outcrossing polyploids},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {540},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1002},
doi = {10.1093/BIOINFORMATICS/BTY1002},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BourkeGVJKSVASM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BouyssieLLABM19,
author = {David Bouyssi{\'{e}} and
Jean Lesne and
Marie Locard{-}Paulet and
Renaud Albigot and
Odile Burlet{-}Schiltz and
Julien Marcoux},
title = {HDX-Viewer: interactive 3D visualization of hydrogen-deuterium exchange
data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5331--5333},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz550},
doi = {10.1093/BIOINFORMATICS/BTZ550},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BouyssieLLABM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BraunBBVL19,
author = {Tzipi Braun and
Antonio V. Border{\'{\i}}a and
Cyril Barbezange and
Marco Vignuzzi and
Yoram Louzoun},
title = {Long-term context-dependent genetic adaptation of the viral genetic
cloud},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1907--1915},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty891},
doi = {10.1093/BIOINFORMATICS/BTY891},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BraunBBVL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BraunSPAS19,
author = {Bremen L. Braun and
David A. Schott and
John L. Portwood II and
Carson M. Andorf and
Taner Z. Sen},
title = {PedigreeNet: a web-based pedigree viewer for biological databases},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4184--4186},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz208},
doi = {10.1093/BIOINFORMATICS/BTZ208},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BraunSPAS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrazdaKLBFSM19,
author = {V{\'{a}}clav Br{\'{a}}zda and
Jan Kolomazn{\'{\i}}k and
Jir{\'{\i}} L{\'{y}}sek and
Martin Bartas and
Miroslav Fojta and
Jir{\'{\i}} Stastn{\'{y}} and
Jean{-}Louis Mergny},
title = {G4Hunter web application: a web server for G-quadruplex prediction},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3493--3495},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz087},
doi = {10.1093/BIOINFORMATICS/BTZ087},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrazdaKLBFSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BreezeRDDLNVBTS19,
author = {Charles E. Breeze and
Alex P. Reynolds and
Jenny van Dongen and
Ian Dunham and
John Lazar and
Shane J. Neph and
Jeff Vierstra and
Guillaume Bourque and
Andrew E. Teschendorff and
John A. Stamatoyannopoulos and
Stephan Beck},
title = {eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic
data},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4767--4769},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz456},
doi = {10.1093/BIOINFORMATICS/BTZ456},
timestamp = {Tue, 08 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BreezeRDDLNVBTS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrenesL19,
author = {Alejandro Brenes and
Angus I. Lamond},
title = {The Encyclopedia of Proteome Dynamics: the KinoViewer},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1441--1442},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty823},
doi = {10.1093/BIOINFORMATICS/BTY823},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrenesL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrombergER19,
author = {Yana Bromberg and
Nadia El{-}Mabrouk and
Predrag Radivojac},
title = {{ISMB/ECCB} 2019 Proceedings},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i1--i2},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz439},
doi = {10.1093/BIOINFORMATICS/BTZ439},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrombergER19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownL19,
author = {Richard C. Brown and
Gerton Lunter},
title = {An equivariant Bayesian convolutional network predicts recombination
hotspots and accurately resolves binding motifs},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2177--2184},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty964},
doi = {10.1093/BIOINFORMATICS/BTY964},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuchmannH19,
author = {Jan P. Buchmann and
Edward C. Holmes},
title = {Entrezpy: a Python library to dynamically interact with the {NCBI}
Entrez databases},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4511--4514},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz385},
doi = {10.1093/BIOINFORMATICS/BTZ385},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuchmannH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuckleGMB19,
author = {Adam Buckle and
Nick Gilbert and
Davide Marenduzzo and
Chris A. Brackley},
title = {capC-MAP: software for analysis of Capture-C data},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4773--4775},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz480},
doi = {10.1093/BIOINFORMATICS/BTZ480},
timestamp = {Tue, 27 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuckleGMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BudisGRSKSGHDMS19,
author = {Jaroslav Budis and
Juraj Gazdarica and
J{\'{a}}n Radv{\'{a}}nszky and
G{\'{a}}bor Sz{\"{u}}cs and
Marcel Kuchar{\'{\i}}k and
Lucia Strieskova and
Iveta Gazdaricova and
Maria Harsanyova and
Frantisek Duris and
Gabriel Minarik and
Martina Sekelska and
B{\'{a}}lint Nagy and
J{\'{a}}n Turna and
Tom{\'{a}}s Szemes},
title = {Combining count- and length-based z-scores leads to improved predictions
in non-invasive prenatal testing},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1284--1291},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty806},
doi = {10.1093/BIOINFORMATICS/BTY806},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BudisGRSKSGHDMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BudisKDGZFSBR19,
author = {Jaroslav Budis and
Marcel Kuchar{\'{\i}}k and
Frantisek Duris and
Juraj Gazdarica and
Michaela Zrubcov{\'{a}} and
Andrej Ficek and
Tom{\'{a}}s Szemes and
Brona Brejov{\'{a}} and
J{\'{a}}n Radv{\'{a}}nszky},
title = {Dante: genotyping of known complex and expanded short tandem repeats},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1310--1317},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty791},
doi = {10.1093/BIOINFORMATICS/BTY791},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BudisKDGZFSBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuelsDDRH19,
author = {Robert M. Buels and
Shihab Dider and
Colin M. Diesh and
James Robinson and
Ian H. Holmes},
title = {Cram-JS: reference-based decompression in node and the browser},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4451--4452},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz384},
doi = {10.1093/BIOINFORMATICS/BTZ384},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuelsDDRH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurginMM19,
author = {Josephine Burgin and
Corentin Molitor and
Fady R. Mohareb},
title = {MapOptics: a light-weight, cross-platform visualization tool for optical
mapping alignment},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2671--2673},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1013},
doi = {10.1093/BIOINFORMATICS/BTY1013},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurginMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CairnsOMS19,
author = {Jonathan M. Cairns and
William R. Orchard and
Valeriya Malysheva and
Mikhail Spivakov},
title = {Chicdiff: a computational pipeline for detecting differential chromosomal
interactions in Capture Hi-C data},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4764--4766},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz450},
doi = {10.1093/BIOINFORMATICS/BTZ450},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CairnsOMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CalderazzoBF19,
author = {Silvia Calderazzo and
Marco Brancaccio and
B{\"{a}}rbel Finkenst{\"{a}}dt},
title = {Filtering and inference for stochastic oscillators with distributed
delays},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1380--1387},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty782},
doi = {10.1093/BIOINFORMATICS/BTY782},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CalderazzoBF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CampbellY19,
author = {Kieran R. Campbell and
Christopher Yau},
title = {A descriptive marker gene approach to single-cell pseudotime inference},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {28--35},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty498},
doi = {10.1093/BIOINFORMATICS/BTY498},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CampbellY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Campos-LaborieR19,
author = {Francisco J. Campos{-}Laborie and
Alberto Risue{\~{n}}o and
M. Ortiz{-}Est{\'{e}}vez and
B. Ros{\'{o}}n{-}Burgo and
Conrad Droste and
Celia Fontanillo and
Remco Loos and
Jose Manuel S{\'{a}}nchez{-}Santos and
Matthew W. B. Trotter and
Javier De Las Rivas},
title = {{DECO:} decompose heterogeneous population cohorts for patient stratification
and discovery of sample biomarkers using omic data profiling},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3651--3662},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz148},
doi = {10.1093/BIOINFORMATICS/BTZ148},
timestamp = {Sat, 16 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Campos-LaborieR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CantiniKRBRZ19,
author = {Laura Cantini and
Ulykbek Kairov and
Aur{\'{e}}lien de Reyni{\`{e}}s and
Emmanuel Barillot and
Fran{\c{c}}ois Radvanyi and
Andrei Yu. Zinovyev},
title = {Assessing reproducibility of matrix factorization methods in independent
transcriptomes},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4307--4313},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz225},
doi = {10.1093/BIOINFORMATICS/BTZ225},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CantiniKRBRZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CanverBMP19,
author = {Matthew C. Canver and
Daniel E. Bauer and
Takahiro Maeda and
Luca Pinello},
title = {DrugThatGene: integrative analysis to streamline the identification
of druggable genes, pathways and protein complexes from {CRISPR} screens},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1981--1984},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty913},
doi = {10.1093/BIOINFORMATICS/BTY913},
timestamp = {Tue, 08 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CanverBMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoMJGYL19,
author = {Chen Cao and
Lauren Mak and
Guangxu Jin and
Paul Gordon and
Kai Ye and
Quan Long},
title = {{PRESM:} personalized reference editor for somatic mutation discovery
in cancer genomics},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1445--1452},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty812},
doi = {10.1093/BIOINFORMATICS/BTY812},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoMJGYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoZ19,
author = {Zhen Cao and
Shihua Zhang},
title = {Simple tricks of convolutional neural network architectures improve
DNA-protein binding prediction},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1837--1843},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty893},
doi = {10.1093/BIOINFORMATICS/BTY893},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoZS19,
author = {Han Cao and
Jiayu Zhou and
Emanuel Schwarz},
title = {{RMTL:} an {R} library for multi-task learning},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1797--1798},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty831},
doi = {10.1093/BIOINFORMATICS/BTY831},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CardnerMCB19,
author = {Mathias Cardner and
Nathalie Meyer{-}Schaller and
Gerhard Christofori and
Niko Beerenwinkel},
title = {Inferring signalling dynamics by integrating interventional with observational
data},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i577--i585},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz325},
doi = {10.1093/BIOINFORMATICS/BTZ325},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CardnerMCB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarpentierC19,
author = {Mathilde Carpentier and
Jacques Chomilier},
title = {Protein multiple alignments: sequence-based versus structure-based
programs},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3970--3980},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz236},
doi = {10.1093/BIOINFORMATICS/BTZ236},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarpentierC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarronMMLM19,
author = {Leopold Carron and
Jean Baptiste Morlot and
Vincent Matthys and
Annick Lesne and
Julien Mozziconacci},
title = {Boost-HiC: computational enhancement of long-range contacts in chromosomal
contact maps},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2724--2729},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1059},
doi = {10.1093/BIOINFORMATICS/BTY1059},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarronMMLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CasanovasGCA19,
author = {Albert Casanovas and
{\'{O}}scar Gallardo and
Montserrat Carrascal and
Joaquin Abian},
title = {TCellXTalk facilitates the detection of co-modified peptides for the
study of protein post-translational modification cross-talk in {T}
cells},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1404--1413},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty805},
doi = {10.1093/BIOINFORMATICS/BTY805},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CasanovasGCA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Castillo-LaraA19,
author = {Sergio Castillo{-}Lara and
Josep F. Abril},
title = {PPaxe: easy extraction of protein occurrence and interactions from
the scientific literature},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2523--2524},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty988},
doi = {10.1093/BIOINFORMATICS/BTY988},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Castillo-LaraA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CazauxCR19,
author = {Bastien Cazaux and
Guillaume Castel and
Eric Rivals},
title = {{AQUAPONY:} visualization and interpretation of phylogeographic information
on phylogenetic trees},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3163--3165},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz011},
doi = {10.1093/BIOINFORMATICS/BTZ011},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CazauxCR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CerveraROLNACFH19,
author = {Alejandra Cervera and
Ville Rantanen and
Kristian Ovaska and
Marko Laakso and
Javier Nu{\~{n}}ez{-}Fontarnau and
Amjad Alkodsi and
Julia Casado and
Chiara Facciotto and
Antti H{\"{a}}kkinen and
Riku Louhimo and
Sirkku Karinen and
Kaiyang Zhang and
Kari Lavikka and
Lauri Lyly and
Maninder Pal Singh and
Sampsa Hautaniemi},
title = {Anduril 2: upgraded large-scale data integration framework},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3815--3817},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz133},
doi = {10.1093/BIOINFORMATICS/BTZ133},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CerveraROLNACFH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChagasGOTAPMJRC19,
author = {Vinicius S. Chagas and
Clarice S. Groeneveld and
Kelin G. Oliveira and
Sheyla Trefflich and
Rodrigo C. de Almeida and
Bruce A. J. Ponder and
Kerstin B. Meyer and
Steven J. M. Jones and
A. Gordon Robertson and
Mauro A. A. Castro},
title = {RTNduals: an R/Bioconductor package for analysis of co-regulation
and inference of dual regulons},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5357--5358},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz534},
doi = {10.1093/BIOINFORMATICS/BTZ534},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChagasGOTAPMJRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChakiachviliMCL19,
author = {Marc Chakiachvili and
Sylvain Milanesi and
Anne{-}Muriel Arigon Chifolleau and
Vincent Lefort},
title = {{WAVES:} a web application for versatile enhanced bioinformatic services},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {140--142},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty639},
doi = {10.1093/BIOINFORMATICS/BTY639},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChakiachviliMCL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanWTBG19,
author = {Jinyan Chan and
Xuan Wang and
Jacob A. Turner and
Nicole E. Baldwin and
Jinghua Gu},
title = {Breaking the paradigm: Dr Insight empowers signature-free, enhanced
drug repurposing},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2818--2826},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz006},
doi = {10.1093/BIOINFORMATICS/BTZ006},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanWTBG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChandakTOHW19,
author = {Shubham Chandak and
Kedar Tatwawadi and
Idoia Ochoa and
Mikel Hernaez and
Tsachy Weissman},
title = {{SPRING:} a next-generation compressor for {FASTQ} data},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2674--2676},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1015},
doi = {10.1093/BIOINFORMATICS/BTY1015},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChandakTOHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangLGDXHHZ19,
author = {Cheng Chang and
Mansheng Li and
Chaoping Guo and
Yuqing Ding and
Kaikun Xu and
Mingfei Han and
Fuchu He and
Yunping Zhu},
title = {{PANDA:} {A} comprehensive and flexible tool for quantitative proteomics
data analysis},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {898--900},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty727},
doi = {10.1093/BIOINFORMATICS/BTY727},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangLGDXHHZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangSCWY19,
author = {Kai{-}Chun Chang and
Emmanuel Oluwatobi Salawu and
Yuan{-}Yu Chang and
Jin{-}Der Wen and
Lee{-}Wei Yang},
title = {Resolution-exchanged structural modeling and simulations jointly unravel
that subunit rolling underlies the mechanism of programmed ribosomal
frameshifting},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {945--952},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty762},
doi = {10.1093/BIOINFORMATICS/BTY762},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangSCWY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CheerlaG19,
author = {Anika Cheerla and
Olivier Gevaert},
title = {Deep learning with multimodal representation for pancancer prognosis
prediction},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i446--i454},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz342},
doi = {10.1093/BIOINFORMATICS/BTZ342},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CheerlaG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Chen19,
author = {Swaine L. Chen},
title = {Implementation of a Stirling number estimator enables direct calculation
of population genetics tests for large sequence datasets},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2668--2670},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1012},
doi = {10.1093/BIOINFORMATICS/BTY1012},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Chen19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenABGMW19,
author = {Ziwei Chen and
Shaokun An and
Xiangqi Bai and
Fuzhou Gong and
Liang Ma and
Lin Wan},
title = {DensityPath: an algorithm to visualize and reconstruct cell state-transition
path on density landscape for single-cell {RNA} sequencing data},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2593--2601},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1009},
doi = {10.1093/BIOINFORMATICS/BTY1009},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenABGMW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCSWZ19,
author = {Sijie Chen and
Yixin Chen and
Fengzhu Sun and
Michael S. Waterman and
Xuegong Zhang},
title = {A new statistic for efficient detection of repetitive sequences},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4596--4606},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz262},
doi = {10.1093/BIOINFORMATICS/BTZ262},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCSWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenHL19,
author = {Bob Chen and
Charles A. Herring and
Ken S. Lau},
title = {pyNVR: investigating factors affecting feature selection from scRNA-seq
data for lineage reconstruction},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2335--2337},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty950},
doi = {10.1093/BIOINFORMATICS/BTY950},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenHL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJM19,
author = {Dexiong Chen and
Laurent Jacob and
Julien Mairal},
title = {Biological sequence modeling with convolutional kernel networks},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3294--3302},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz094},
doi = {10.1093/BIOINFORMATICS/BTZ094},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJQY19,
author = {Chun{-}Chi Chen and
Hyundoo Jeong and
Xiaoning Qian and
Byung{-}Jun Yoon},
title = {{TOPAS:} network-based structural alignment of {RNA} sequences},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2941--2948},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz001},
doi = {10.1093/BIOINFORMATICS/BTZ001},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJQY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJZCZCZW19,
author = {Muhao Chen and
Chelsea J.{-}T. Ju and
Guangyu Zhou and
Xuelu Chen and
Tianran Zhang and
Kai{-}Wei Chang and
Carlo Zaniolo and
Wei Wang},
title = {Multifaceted protein-protein interaction prediction based on Siamese
residual {RCNN}},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i305--i314},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz328},
doi = {10.1093/BIOINFORMATICS/BTZ328},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJZCZCZW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenL19,
author = {Xun Chen and
Dawei Li},
title = {ERVcaller: identifying polymorphic endogenous retrovirus and other
transposable element insertions using whole-genome sequencing data},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3913--3922},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz205},
doi = {10.1093/BIOINFORMATICS/BTZ205},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLFRMS19,
author = {Junfang Chen and
Dietmar Lippold and
Josef Frank and
William Rayner and
Andreas Meyer{-}Lindenberg and
Emanuel Schwarz},
title = {Gimpute: an efficient genetic data imputation pipeline},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1433--1435},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty814},
doi = {10.1093/BIOINFORMATICS/BTY814},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLFRMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLNL19,
author = {Wei Chen and
Hao Lv and
Fulei Nie and
Hao Lin},
title = {i6mA-Pred: identifying {DNA} N6-methyladenine sites in the rice genome},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2796--2800},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz015},
doi = {10.1093/BIOINFORMATICS/BTZ015},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLNL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenMPY19,
author = {Ling{-}Yun Chen and
Diego F. Morales{-}Briones and
Courtney N. Passow and
Ya Yang},
title = {Performance of gene expression analyses using de novo assembled transcripts
in polyploid species},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4314--4320},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz620},
doi = {10.1093/BIOINFORMATICS/BTZ620},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenMPY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenPHCC19,
author = {Jiazhou Chen and
Hong Peng and
Guoqiang Han and
Hongmin Cai and
Jiulun Cai},
title = {{HOGMMNC:} a higher order graph matching with multiple network constraints
model for gene-drug regulatory modules identification},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {602--610},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty662},
doi = {10.1093/BIOINFORMATICS/BTY662},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenPHCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenQY19,
author = {Chun{-}Chi Chen and
Xiaoning Qian and
Byung{-}Jun Yoon},
title = {RNAdetect: efficient computational detection of novel non-coding RNAs},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1133--1141},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty765},
doi = {10.1093/BIOINFORMATICS/BTY765},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenQY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSZBJ19,
author = {Hao Chen and
Dipan Shaw and
Jianyang Zeng and
Dongbo Bu and
Tao Jiang},
title = {{DIFFUSE:} predicting isoform functions from sequences and expression
profiles via deep learning},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i284--i294},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz367},
doi = {10.1093/BIOINFORMATICS/BTZ367},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSZBJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWYMWQ19,
author = {Li Chen and
Ye Wang and
Bing Yao and
Amit Mitra and
Xu Wang and
Xiao Qin},
title = {{TIVAN:} tissue-specific cis-eQTL single nucleotide variant annotation
and prediction},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1573--1575},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty872},
doi = {10.1093/BIOINFORMATICS/BTY872},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWYMWQ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengGNB19,
author = {Alice Cheng and
Charles E. Grant and
William S. Noble and
Timothy L. Bailey},
title = {MoMo: discovery of statistically significant post-translational modification
motifs},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2774--2782},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1058},
doi = {10.1093/BIOINFORMATICS/BTY1058},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengGNB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengLXC19,
author = {Xiang Cheng and
Wei{-}Zhong Lin and
Xuan Xiao and
Kuo{-}Chen Chou},
title = {pLoc{\_}bal-mAnimal: predict subcellular localization of animal proteins
by balancing training dataset and PseAAC},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {398--406},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty628},
doi = {10.1093/BIOINFORMATICS/BTY628},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengLXC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChidesterZDM19,
author = {Benjamin Chidester and
Tianming Zhou and
Minh N. Do and
Jian Ma},
title = {Rotation equivariant and invariant neural networks for microscopy
image analysis},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i530--i537},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz353},
doi = {10.1093/BIOINFORMATICS/BTZ353},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChidesterZDM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChitpinAP19,
author = {Justin G. Chitpin and
Aseel Awdeh and
Theodore J. Perkins},
title = {{RECAP} reveals the true statistical significance of ChIP-seq peak
calls},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3592--3598},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz150},
doi = {10.1093/BIOINFORMATICS/BTZ150},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChitpinAP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiuO19,
author = {Jimmy Ka Ho Chiu and
Rick Twee{-}Hee Ong},
title = {{ARGDIT:} a validation and integration toolkit for Antimicrobial Resistance
Gene Databases},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2466--2474},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty987},
doi = {10.1093/BIOINFORMATICS/BTY987},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiuO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChunK19,
author = {Hein Chun and
Sangwoo Kim},
title = {BAMixChecker: an automated checkup tool for matched sample pairs in
{NGS} cohort},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4806--4808},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz479},
doi = {10.1093/BIOINFORMATICS/BTZ479},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChunK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClairRSMTAK19,
author = {Geremy Clair and
Sarah Reehl and
Kelly G. Stratton and
Matthew E. Monroe and
Malak M. Tfaily and
Charles Ansong and
Jennifer E. Kyle},
title = {Lipid Mini-On: mining and ontology tool for enrichment analysis of
lipidomic data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4507--4508},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz250},
doi = {10.1093/BIOINFORMATICS/BTZ250},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClairRSMTAK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClaverieT19,
author = {Jean{-}Michel Claverie and
Thi Ngan Ta},
title = {ACDtool: a web-server for the generic analysis of large data sets
of counts},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {170--171},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty640},
doi = {10.1093/BIOINFORMATICS/BTY640},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClaverieT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Climente-Gonzalez19,
author = {H{\'{e}}ctor Climente{-}Gonz{\'{a}}lez and
Chlo{\'{e}}{-}Agathe Azencott and
Samuel Kaski and
Makoto Yamada},
title = {Block {HSIC} Lasso: model-free biomarker detection for ultra-high
dimensional data},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i427--i435},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz333},
doi = {10.1093/BIOINFORMATICS/BTZ333},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Climente-Gonzalez19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ComeauWDL19,
author = {Donald C. Comeau and
Chih{-}Hsuan Wei and
Rezarta Islamaj Dogan and
Zhiyong Lu},
title = {{PMC} text mining subset in BioC: about three million full-text articles
and growing},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3533--3535},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz070},
doi = {10.1093/BIOINFORMATICS/BTZ070},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ComeauWDL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorlissRPMKPRYJ19,
author = {Bruce A. Corliss and
H. Clifton Ray and
James T. Patrie and
Jennifer Mansour and
Sam Kesting and
Janice H. Park and
Gustavo K. Rohde and
Paul A. Yates and
Kevin A. Janes and
Shayn M. Peirce},
title = {{CIRCOAST:} a statistical hypothesis test for cellular colocalization
with network structures},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {506--514},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty638},
doi = {10.1093/BIOINFORMATICS/BTY638},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorlissRPMKPRYJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorlissRPMKPRYJ19a,
author = {Bruce A. Corliss and
H. Clifton Ray and
James T. Patrie and
Jennifer Mansour and
Sam Kesting and
Janice H. Park and
Gustavo K. Rohde and
Paul A. Yates and
Kevin A. Janes and
Shayn M. Peirce},
title = {{CIRCOAST:} a statistical hypothesis test for cellular colocalization
with network structures},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {720--721},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty797},
doi = {10.1093/BIOINFORMATICS/BTY797},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorlissRPMKPRYJ19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CosentinoI19,
author = {Salvatore Cosentino and
Wataru Iwasaki},
title = {SonicParanoid: fast, accurate and easy orthology inference},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {149--151},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty631},
doi = {10.1093/BIOINFORMATICS/BTY631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CosentinoI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CreedAMG19,
author = {Jordan H. Creed and
Garrick Aden{-}Buie and
Alvaro N. A. Monteiro and
Travis A. Gerke},
title = {epiTAD: a web application for visualizing chromosome conformation
capture data in the context of genetic epidemiology},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4462--4464},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz387},
doi = {10.1093/BIOINFORMATICS/BTZ387},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CreedAMG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CremonaXMRCM19,
author = {Marzia A. Cremona and
Hongyan Xu and
Kateryna D. Makova and
Matthew Reimherr and
Francesca Chiaromonte and
Pedro Madrigal},
title = {Functional data analysis for computational biology},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3211--3213},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz045},
doi = {10.1093/BIOINFORMATICS/BTZ045},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CremonaXMRCM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrisanGM19,
author = {Anamaria Crisan and
Jennifer L. Gardy and
Tamara Munzner},
title = {A systematic method for surveying data visualizations and a resulting
genomic epidemiology visualization typology: GEViT},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1668--1676},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty832},
doi = {10.1093/BIOINFORMATICS/BTY832},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrisanGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrisanMG19,
author = {Anamaria Crisan and
Tamara Munzner and
Jennifer L. Gardy},
title = {Adjutant: an R-based tool to support topic discovery for systematic
and literature reviews},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1070--1072},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty722},
doi = {10.1093/BIOINFORMATICS/BTY722},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrisanMG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrowellGLD19,
author = {Alexander M. Crowell and
Casey S. Greene and
Jennifer J. Loros and
Jay C. Dunlap},
title = {Learning and Imputation for Mass-spec Bias Reduction {(LIMBR)}},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1518--1526},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty828},
doi = {10.1093/BIOINFORMATICS/BTY828},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrowellGLD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CunialAB19,
author = {Fabio Cunial and
Jarno Alanko and
Djamal Belazzougui},
title = {A framework for space-efficient variable-order Markov models},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4607--4616},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz268},
doi = {10.1093/BIOINFORMATICS/BTZ268},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CunialAB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuppensLTG19,
author = {Tania Cuppens and
Thomas E. Ludwig and
Pascal Trouv{\'{e}} and
Emmanuelle G{\'{e}}nin},
title = {{GEMPROT:} visualization of the impact on the protein of the genetic
variants found on each haplotype},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2492--2494},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty993},
doi = {10.1093/BIOINFORMATICS/BTY993},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuppensLTG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CurisCGLSM19,
author = {Emmanuel Curis and
Cindie Courtin and
Pierre Alexis Geoffroy and
Jean{-}Louis Laplanche and
Bruno Saubam{\'{e}}a and
Cynthia Marie{-}Claire},
title = {Determination of sets of covariating gene expression using graph analysis
on pairwise expression ratios},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {258--265},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty629},
doi = {10.1093/BIOINFORMATICS/BTY629},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CurisCGLSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CurratAQER19,
author = {Mathias Currat and
Miguel Arenas and
Claudio S. Quilodr{\`{a}}n and
Laurent Excoffier and
Nicolas Ray},
title = {{SPLATCHE3:} simulation of serial genetic data under spatially explicit
evolutionary scenarios including long-distance dispersal},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4480--4483},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz311},
doi = {10.1093/BIOINFORMATICS/BTZ311},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CurratAQER19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CzajkowskiVFC19,
author = {Matthew D. Czajkowski and
Daniel P. Vance and
Steven A. Frese and
Giorgio Casaburi},
title = {GenCoF: a graphical user interface to rapidly remove human genome
contaminants from metagenomic datasets},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2318--2319},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty963},
doi = {10.1093/BIOINFORMATICS/BTY963},
timestamp = {Mon, 27 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CzajkowskiVFC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CzechBS19,
author = {Lucas Czech and
Pierre Barbera and
Alexandros Stamatakis},
title = {Methods for automatic reference trees and multilevel phylogenetic
placement},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1151--1158},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty767},
doi = {10.1093/BIOINFORMATICS/BTY767},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CzechBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaberdakuF19,
author = {Sebastian Daberdaku and
Carlo Ferrari},
title = {Antibody interface prediction with 3D Zernike descriptors and {SVM}},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1870--1876},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty918},
doi = {10.1093/BIOINFORMATICS/BTY918},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaberdakuF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DadanehZQ19,
author = {Siamak Zamani Dadaneh and
Mingyuan Zhou and
Xiaoning Qian},
title = {Bayesian negative binomial regression for differential expression
with confounding factors},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2346},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty808},
doi = {10.1093/BIOINFORMATICS/BTY808},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DadanehZQ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiJYY19,
author = {Jiaan Dai and
Wei Jiang and
Fengchao Yu and
Weichuan Yu},
title = {Xolik: finding cross-linked peptides with maximum paired scores in
linear time},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {251--257},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty526},
doi = {10.1093/BIOINFORMATICS/BTY526},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiJYY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiWPWLLXY19,
author = {Mingwei Dai and
Xiang Wan and
Hao Peng and
Yao Wang and
Yue Liu and
Jin Liu and
Zongben Xu and
Can Yang},
title = {Joint analysis of individual-level and summary-level {GWAS} data by
leveraging pleiotropy},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1729--1736},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty870},
doi = {10.1093/BIOINFORMATICS/BTY870},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiWPWLLXY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiWYW19,
author = {Zhenwei Dai and
Sunny Hei Wong and
Jun Yu and
Yingying Wei},
title = {Batch effects correction for microbiome data with Dirichlet-multinomial
regression},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {807--814},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty729},
doi = {10.1093/BIOINFORMATICS/BTY729},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiWYW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiWYW19a,
author = {Zhenwei Dai and
Sunny Hei Wong and
Jun Yu and
Yingying Wei},
title = {Batch effects correction for microbiome data with Dirichlet-multinomial
regression},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2348},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty874},
doi = {10.1093/BIOINFORMATICS/BTY874},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiWYW19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DamerellSGJBM19,
author = {David R. Damerell and
Claire Strain{-}Damerell and
Sefa Garsot and
Stephen P. Joyce and
Paul Barrett and
Brian D. Marsden},
title = {SATurn: a modular bioinformatics framework for the design of robust
maintainable web-based and standalone applications},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {349--351},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty549},
doi = {10.1093/BIOINFORMATICS/BTY549},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DamerellSGJBM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaoLWFDCL19,
author = {Fu{-}Ying Dao and
Hao Lv and
Fang Wang and
Chao{-}Qin Feng and
Hui Ding and
Wei Chen and
Hao Lin},
title = {Identify origin of replication in Saccharomyces cerevisiae using two-step
feature selection technique},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2075--2083},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty943},
doi = {10.1093/BIOINFORMATICS/BTY943},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaoLWFDCL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DardeLLSATCNJRC19,
author = {Thomas A. Darde and
Estelle Lecluze and
Aur{\'{e}}lie Lardenois and
Isabelle St{\'{e}}vant and
Nathan Alary and
Frank T{\"{u}}ttelmann and
Olivier Collin and
Serge Nef and
Bernard J{\'{e}}gou and
Antoine D. Rolland and
Fr{\'{e}}d{\'{e}}ric Chalmel},
title = {The ReproGenomics Viewer: a multi-omics and cross-species resource
compatible with single-cell studies for the reproductive science community},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3133--3139},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz047},
doi = {10.1093/BIOINFORMATICS/BTZ047},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DardeLLSATCNJRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DarziYY19,
author = {Youssef Darzi and
Yuta Yamate and
Takuji Yamada},
title = {FuncTree2: an interactive radial tree for functional hierarchies and
omics data visualization},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4519--4521},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz245},
doi = {10.1093/BIOINFORMATICS/BTZ245},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DarziYY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasDCS19,
author = {Shaoli Das and
Xiang Deng and
Kevin Camphausen and
Uma T. Shankavaram},
title = {DiscoverSL: an {R} package for multi-omic data driven prediction of
synthetic lethality in cancers},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {701--702},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty673},
doi = {10.1093/BIOINFORMATICS/BTY673},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasDCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasPM19,
author = {Barnali Das and
Abhijeet Rajendra Patil and
Pralay Mitra},
title = {A network-based zoning for parallel whole-cell simulation},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {88--94},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty530},
doi = {10.1093/BIOINFORMATICS/BTY530},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DavisV19,
author = {Jacob D. Davis and
Eberhard O. Voit},
title = {Metrics for regulated biochemical pathway systems},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2118--2124},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty942},
doi = {10.1093/BIOINFORMATICS/BTY942},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DavisV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DecherchiSSR19,
author = {Sergio Decherchi and
Andrea Spitaleri and
John E. Stone and
Walter Rocchia},
title = {NanoShaper-VMD interface: computing and visualizing surfaces, pockets
and channels in molecular systems},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1241--1243},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty761},
doi = {10.1093/BIOINFORMATICS/BTY761},
timestamp = {Sat, 07 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DecherchiSSR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DehghannasiriSS19,
author = {Roozbeh Dehghannasiri and
Linda Szabo and
Julia Salzman},
title = {Ambiguous splice sites distinguish circRNA and linear splicing in
the human genome},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1263--1268},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty785},
doi = {10.1093/BIOINFORMATICS/BTY785},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DehghannasiriSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeistPWKSC19,
author = {Timo Deist and
Andrew Patti and
Zhaoqi Wang and
David Krane and
Taylor Sorenson and
David Craft},
title = {Simulation-assisted machine learning},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4072--4080},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz199},
doi = {10.1093/BIOINFORMATICS/BTZ199},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeistPWKSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DelgadoRCS19,
author = {Javier Delgado and
Leandro G. Radusky and
Damiano Cianferoni and
Luis Serrano},
title = {FoldX 5.0: working with RNA, small molecules and a new graphical interface},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4168--4169},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz184},
doi = {10.1093/BIOINFORMATICS/BTZ184},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DelgadoRCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczD19,
author = {Sebastian Deorowicz and
Agnieszka Danek},
title = {GTShark: genotype compression in large projects},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4791--4793},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz508},
doi = {10.1093/BIOINFORMATICS/BTZ508},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczDGG19,
author = {Sebastian Deorowicz and
Agnieszka Debudaj{-}Grabysz and
Adam Gudys and
Szymon Grabowski},
title = {Whisper: read sorting allows robust mapping of {DNA} sequencing data},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2043--2050},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty927},
doi = {10.1093/BIOINFORMATICS/BTY927},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczDGG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczGDKD19,
author = {Sebastian Deorowicz and
Adam Gudys and
Maciej Dlugosz and
Marek Kokot and
Agnieszka Danek},
title = {Kmer-db: instant evolutionary distance estimation},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {133--136},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty610},
doi = {10.1093/BIOINFORMATICS/BTY610},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczGDKD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczWD19,
author = {Sebastian Deorowicz and
Joanna Walczyszyn and
Agnieszka Debudaj{-}Grabysz},
title = {CoMSA: compression of protein multiple sequence alignment files},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {227--234},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty619},
doi = {10.1093/BIOINFORMATICS/BTY619},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczWD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DepkeFB19,
author = {Tobias Depke and
Raimo Franke and
Mark Br{\"{o}}nstrup},
title = {CluMSID: an {R} package for similarity-based clustering of tandem
mass spectra to aid feature annotation in metabolomics},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3196--3198},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz005},
doi = {10.1093/BIOINFORMATICS/BTZ005},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DepkeFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DereliOG19,
author = {Onur Dereli and
Ceyda Oguz and
Mehmet G{\"{o}}nen},
title = {Path2Surv: Pathway/gene set-based survival analysis using multiple
kernel learning},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5137--5145},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz446},
doi = {10.1093/BIOINFORMATICS/BTZ446},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DereliOG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Deschamps-Francoeur19,
author = {Gabrielle Deschamps{-}Francoeur and
Vincent Boivin and
Sherif Abou Elela and
Michelle S. Scott},
title = {CoCo: RNA-seq read assignment correction for nested genes and multimapped
reads},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5039--5047},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz433},
doi = {10.1093/BIOINFORMATICS/BTZ433},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Deschamps-Francoeur19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiamentWSLFAASY19,
author = {Alon Diament and
Iddo Weiner and
Noam Shahar and
Shira Landman and
Yael Feldman and
Shimshi Atar and
Meital Avitan and
Shira Schweitzer and
Iftach Yacoby and
Tamir Tuller},
title = {ChimeraUGEM: unsupervised gene expression modeling in any given organism},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3365--3371},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz080},
doi = {10.1093/BIOINFORMATICS/BTZ080},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiamentWSLFAASY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DijkstraPFFAH19,
author = {Maurits J. J. Dijkstra and
Atze van der Ploeg and
K. Anton Feenstra and
Wan J. Fokkink and
Sanne Abeln and
Jaap Heringa},
title = {Tailor-made multiple sequence alignments using the {PRALINE} 2 alignment
toolkit},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5315--5317},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz572},
doi = {10.1093/BIOINFORMATICS/BTZ572},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DijkstraPFFAH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiltheyMCCCMRKB19,
author = {Alexander T. Dilthey and
Alexander J. Mentzer and
Raphael Carapito and
Clare Cutland and
Nezih Cereb and
Shabir A Madhi and
Arang Rhie and
Sergey Koren and
Seiamak Bahram and
Gil McVean and
Adam M. Phillippy},
title = {HLA*LA - {HLA} typing from linearly projected graph alignments},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4394--4396},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz235},
doi = {10.1093/BIOINFORMATICS/BTZ235},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiltheyMCCCMRKB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingSWHM19,
author = {Hao Ding and
Michael F. Sharpnack and
Chao Wang and
Kun Huang and
Raghu Machiraju},
title = {Integrative cancer patient stratification via subspace merging},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1653--1659},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty866},
doi = {10.1093/BIOINFORMATICS/BTY866},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingSWHM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DoRKSK19,
author = {Kieu Trinh Do and
David J. N. P. Rasp and
Gabi Kastenm{\"{u}}ller and
Karsten Suhre and
Jan Krumsiek},
title = {MoDentify: phenotype-driven module identification in metabolomics
networks at different resolutions},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {532--534},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty650},
doi = {10.1093/BIOINFORMATICS/BTY650},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DoRKSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DolzhenkoDSKPCE19,
author = {Egor Dolzhenko and
Viraj Deshpande and
Felix Schlesinger and
Peter Krusche and
Roman Petrovski and
Sai Chen and
Dorothea Emig{-}Agius and
Andrew Gross and
Giuseppe Narzisi and
Brett Bowman and
Konrad Scheffler and
Joke J. F. A van Vugt and
Courtney E. French and
Alba Sanchis{-}Juan and
Kristina Ib{\'{a}}{\~{n}}ez and
Arianna Tucci and
Bryan R. Lajoie and
Jan H. Veldink and
F. Lucy Raymond and
Ryan J. Taft and
David R. Bentley and
Michael A. Eberle},
title = {ExpansionHunter: a sequence-graph-based tool to analyze variation
in short tandem repeat regions},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4754--4756},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz431},
doi = {10.1093/BIOINFORMATICS/BTZ431},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DolzhenkoDSKPCE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongFA19,
author = {Yonghui Dong and
Liron Feldberg and
Asaph Aharoni},
title = {Miso: an {R} package for multiple isotope labeling assisted metabolomics
data analysis},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3524--3526},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz092},
doi = {10.1093/BIOINFORMATICS/BTZ092},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongFA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongLZZCWC19,
author = {Xuesi Dong and
Lijuan Lin and
Ruyang Zhang and
Yang Zhao and
David C. Christiani and
Yongyue Wei and
Feng Chen},
title = {{TOBMI:} trans-omics block missing data imputation using a k-nearest
neighbor weighted approach},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1278--1283},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty796},
doi = {10.1093/BIOINFORMATICS/BTY796},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongLZZCWC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongTZT19,
author = {Danyue Dong and
Yuan Tian and
Shijie C. Zheng and
Andrew E. Teschendorff},
title = {ebGSEA: an improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association
Studies},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3514--3516},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz073},
doi = {10.1093/BIOINFORMATICS/BTZ073},
timestamp = {Thu, 08 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongTZT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuCW19,
author = {Rose Du and
Vincent J. Carey and
Scott T. Weiss},
title = {deconvSeq: deconvolution of cell mixture distribution in sequencing
data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5095--5102},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz444},
doi = {10.1093/BIOINFORMATICS/BTZ444},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuCW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuCWTCCPTWL19,
author = {Di Du and
Chia{-}Hua Chang and
Yumeng Wang and
Pan Tong and
Wai Kin Chan and
Yulun Chiu and
Bo Peng and
Lin Tan and
John N. Weinstein and
Philip L. Lorenzi},
title = {Response envelope analysis for quantitative evaluation of drug combinations},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3761--3770},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz091},
doi = {10.1093/BIOINFORMATICS/BTZ091},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuCWTCCPTWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuLZYRGSS19,
author = {Lei Du and
Kefei Liu and
Lei Zhu and
Xiaohui Yao and
Shannon L. Risacher and
Lei Guo and
Andrew J. Saykin and
Li Shen},
title = {Identifying progressive imaging genetic patterns via multi-task sparse
canonical correlation analysis: a longitudinal study of the {ADNI}
cohort},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i474--i483},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz320},
doi = {10.1093/BIOINFORMATICS/BTZ320},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuLZYRGSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuSPGFINLWPNDPM19,
author = {Juanjiangmeng Du and
Monica Sudarsanam and
Eduardo P{\'{e}}rez{-}Palma and
Andrea Ganna and
Laurent C. Francioli and
Sumaiya Iqbal and
Lisa{-}Marie Niestroj and
Costin Leu and
Ben Weisburd and
Timothy Poterba and
Peter N{\"{u}}rnberg and
Mark J. Daly and
Aarno Palotie and
Patrick May and
Dennis Lal},
title = {Variant Score Ranker - a web application for intuitive missense variant
prioritization},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4478--4479},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz252},
doi = {10.1093/BIOINFORMATICS/BTZ252},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuSPGFINLWPNDPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuanPX19,
author = {Tiehang Duan and
Jos{\'{e}} P. Pinto and
Xiaohui Xie},
title = {Parallel clustering of single cell transcriptomic data with split-merge
sampling on Dirichlet process mixtures},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {953--961},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty702},
doi = {10.1093/BIOINFORMATICS/BTY702},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuanPX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DumitrascuDAE19,
author = {Bianca Dumitrascu and
Gregory Darnell and
Julien Ayroles and
Barbara E. Engelhardt},
title = {Statistical tests for detecting variance effects in quantitative trait
studies},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {200--210},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty565},
doi = {10.1093/BIOINFORMATICS/BTY565},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DumitrascuDAE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DunnBEJLIUCHDKR19,
author = {Tamsen Dunn and
Gwenn Berry and
Dorothea Emig{-}Agius and
Yu Jiang and
Serena Lei and
Anita Iyer and
Nitin Udar and
Han{-}Yu Chuang and
Jeff Hegarty and
Michael Dickover and
Brandy Klotzle and
Justin Robbins and
Marina Bibikova and
Marc Peeters and
Michael Str{\"{o}}mberg},
title = {Pisces: an accurate and versatile variant caller for somatic and germline
next-generation sequencing data},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1579--1581},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty849},
doi = {10.1093/BIOINFORMATICS/BTY849},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DunnBEJLIUCHDKR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DurifMMLP19,
author = {Ghislain Durif and
Laurent Modolo and
Jeff E. Mold and
Sophie Lambert{-}Lacroix and
Franck Picard},
title = {Probabilistic count matrix factorization for single cell expression
data analysis},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4011--4019},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz177},
doi = {10.1093/BIOINFORMATICS/BTZ177},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DurifMMLP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Durrant19,
author = {Jacob D. Durrant},
title = {BlendMol: advanced macromolecular visualization in Blender},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2323--2325},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty968},
doi = {10.1093/BIOINFORMATICS/BTY968},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Durrant19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EcharteaBR19,
author = {Maria Elisa Ruiz Echartea and
Isaure Chauvot de Beauch{\^{e}}ne and
David W. Ritchie},
title = {{EROS-DOCK:} protein-protein docking using exhaustive branch-and-bound
rotational search},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5003--5010},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz434},
doi = {10.1093/BIOINFORMATICS/BTZ434},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EcharteaBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EetemadiT19,
author = {Ameen Eetemadi and
Ilias Tagkopoulos},
title = {Genetic Neural Networks: an artificial neural network architecture
for capturing gene expression relationships},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2226--2234},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty945},
doi = {10.1093/BIOINFORMATICS/BTY945},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EetemadiT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElbasirMKKMB19,
author = {Abdurrahman Elbasir and
Balasubramanian Moovarkumudalvan and
Khalid Kunji and
Prasanna R. Kolatkar and
Raghvendra Mall and
Halima Bensmail},
title = {DeepCrystal: a deep learning framework for sequence-based protein
crystallization prediction},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2216--2225},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty953},
doi = {10.1093/BIOINFORMATICS/BTY953},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElbasirMKKMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElhaikR19,
author = {Eran Elhaik and
Desmond M. Ryan},
title = {Pair Matcher (PaM): fast model-based optimization of treatment/case-control
matches},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2243--2250},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty946},
doi = {10.1093/BIOINFORMATICS/BTY946},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElhaikR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EliseevTYS19,
author = {Igor E. Eliseev and
Ivan N. Terterov and
Anna N. Yudenko and
Olga V. Shamova},
title = {Linking sequence patterns and functionality of alpha-helical antimicrobial
peptides},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2713--2717},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1048},
doi = {10.1093/BIOINFORMATICS/BTY1048},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EliseevTYS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EnacheLNLWFGANS19,
author = {Oana M. Enache and
David L. Lahr and
Ted E. Natoli and
Lev Litichevskiy and
David Wadden and
Corey Flynn and
Joshua Gould and
Jacob K. Asiedu and
Rajiv Narayan and
Aravind Subramanian},
title = {The GCTx format and cmap\{Py, R, M, J\} packages: resources for optimized
storage and integrated traversal of annotated dense matrices},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1427--1429},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty784},
doi = {10.1093/BIOINFORMATICS/BTY784},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EnacheLNLWFGANS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ErikssonJSKNSK19,
author = {Olivia Eriksson and
Alexandra Jauhiainen and
Sara Maad Sasane and
Andrei Kramer and
Anu G. Nair and
Carolina Sartorius and
Jeanette Hellgren Kotaleski},
title = {Uncertainty quantification, propagation and characterization by Bayesian
analysis combined with global sensitivity analysis applied to dynamical
intracellular pathway models},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {284--292},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty607},
doi = {10.1093/BIOINFORMATICS/BTY607},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ErikssonJSKNSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FahyABNHRMAO19,
author = {Eoin Fahy and
Jorge {\'{A}}lvarez{-}Jarreta and
Christopher J. Brasher and
An Nguyen and
Jade I Hawksworth and
Patricia Rodrigues and
Sven Meckelmann and
Stuart M. Allen and
Valerie B. O'Donnell},
title = {LipidFinder on {LIPID} {MAPS:} peak filtering, {MS} searching and
statistical analysis for lipidomics},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {685--687},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty679},
doi = {10.1093/BIOINFORMATICS/BTY679},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FahyABNHRMAO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FailmezgerDDEPS19,
author = {Henrik Failmezger and
Ezgi Dursun and
Sebastian D{\"{u}}mcke and
Max Endele and
Don Poron and
Timm Schroeder and
Anne Krug and
Achim Tresch},
title = {Clustering of samples with a tree-shaped dependence structure, with
an application to microscopic time lapse imaging},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2291--2299},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty939},
doi = {10.1093/BIOINFORMATICS/BTY939},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FailmezgerDDEPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Fanaee-TT19,
author = {Hadi Fanaee{-}T and
Magne Thoresen},
title = {Multi-insight visualization of multi-omics data via ensemble dimension
reduction and tensor factorization},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1625--1633},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty847},
doi = {10.1093/BIOINFORMATICS/BTY847},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Fanaee-TT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Fang19,
author = {Jianwen Fang},
title = {Tightly integrated genomic and epigenomic data mining using tensor
decomposition},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {112--118},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty513},
doi = {10.1093/BIOINFORMATICS/BTY513},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Fang19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FaragBSIBT19,
author = {Sherif Farag and
Rachel M. Bleich and
Elizabeth A. Shank and
Olexandr Isayev and
Albert A Bowers and
Alexander Tropsha},
title = {Inter-Modular Linkers play a crucial role in governing the biosynthesis
of non-ribosomal peptides},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3584--3591},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz127},
doi = {10.1093/BIOINFORMATICS/BTZ127},
timestamp = {Tue, 09 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FaragBSIBT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FarahbodP19,
author = {Marjan Farahbod and
Paul Pavlidis},
title = {Differential coexpression in human tissues and the confounding effect
of mean expression levels},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {55--61},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty538},
doi = {10.1093/BIOINFORMATICS/BTY538},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FarahbodP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengRS19,
author = {Jianglin Feng and
Aakrosh Ratan and
Nathan C. Sheffield},
title = {Augmented Interval List: a novel data structure for efficient genomic
interval search},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4907--4911},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz407},
doi = {10.1093/BIOINFORMATICS/BTZ407},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengRS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengZZLCTL19,
author = {Chao{-}Qin Feng and
Zhao{-}Yue Zhang and
Xiao{-}Juan Zhu and
Yan Lin and
Wei Chen and
Hua Tang and
Hao Lin},
title = {iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional
terminators},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1469--1477},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty827},
doi = {10.1093/BIOINFORMATICS/BTY827},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengZZLCTL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FenoyIJBN19,
author = {Emilio Fenoy and
Jos{\'{e}} M. G. Izarzugaza and
Vanessa Isabell Jurtz and
S{\o}ren Brunak and
Morten Nielsen},
title = {A generic deep convolutional neural network framework for prediction
of receptor-ligand interactions - NetPhosPan: application to kinase
phosphorylation prediction},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1098--1107},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty715},
doi = {10.1093/BIOINFORMATICS/BTY715},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FenoyIJBN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FergusonS19,
author = {James M. Ferguson and
Martin A. Smith},
title = {SquiggleKit: a toolkit for manipulating nanopore signal data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5372--5373},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz586},
doi = {10.1093/BIOINFORMATICS/BTZ586},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FergusonS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerlicSMM19,
author = {Jeremy Ferlic and
Jiantao Shi and
Thomas O. McDonald and
Franziska Michor},
title = {DIFFpop: a stochastic computational approach to simulate differentiation
hierarchies with single cell barcoding},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3849--3851},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz074},
doi = {10.1093/BIOINFORMATICS/BTZ074},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerlicSMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerrariCKCGM19,
author = {Allan J. R. Ferrari and
Milan A. Clasen and
Louise U. Kurt and
Paulo C. Carvalho and
F{\'{a}}bio C. Gozzo and
Leandro Mart{\'{\i}}nez},
title = {TopoLink: evaluation of structural models using chemical crosslinking
distance constraints},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3169--3170},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz014},
doi = {10.1093/BIOINFORMATICS/BTZ014},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerrariCKCGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerrariGM19,
author = {Allan J. R. Ferrari and
F{\'{a}}bio C. Gozzo and
Leandro Mart{\'{\i}}nez},
title = {Statistical force-field for structural modeling using chemical cross-linking/mass
spectrometry distance constraints},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3005--3012},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz013},
doi = {10.1093/BIOINFORMATICS/BTZ013},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerrariGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FineC19,
author = {Jonathan Fine and
Gaurav Chopra},
title = {Lemon: a framework for rapidly mining structural information from
the Protein Data Bank},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4165--4167},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz178},
doi = {10.1093/BIOINFORMATICS/BTZ178},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FineC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FinkleB19,
author = {Justin D. Finkle and
Neda Bagheri},
title = {Hybrid analysis of gene dynamics predicts context-specific expression
and offers regulatory insights},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4671--4678},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz256},
doi = {10.1093/BIOINFORMATICS/BTZ256},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FinkleB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FonsecaAOB19,
author = {N{\'{e}}li Jos{\'{e}} da Fonseca Jr. and
Marcelo Querino Lima Afonso and
Lucas Carrijo de Oliveira and
Lucas Bleicher},
title = {A new method bridging graph theory and residue co-evolutionary networks
for specificity determinant positions detection},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1478--1485},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty846},
doi = {10.1093/BIOINFORMATICS/BTY846},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FonsecaAOB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FonsecaDP19,
author = {Bruno Henrique Ribeiro Da Fonseca and
Douglas Silva Domingues and
Alexandre Rossi Paschoal},
title = {mirtronDB: a mirtron knowledge base},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3873--3874},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz153},
doi = {10.1093/BIOINFORMATICS/BTZ153},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FonsecaDP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FooladiMSK19,
author = {Hosein Fooladi and
Parsa Moradi and
Ali Sharifi{-}Zarchi and
Babak Hossein Khalaj},
title = {Enhanced Waddington landscape model with cell-cell communication can
explain molecular mechanisms of self-organization},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4081--4088},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz201},
doi = {10.1093/BIOINFORMATICS/BTZ201},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FooladiMSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FortuneW19,
author = {Mary D. Fortune and
Chris Wallace},
title = {simGWAS: a fast method for simulation of large scale case-control
{GWAS} summary statistics},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1901--1906},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty898},
doi = {10.1093/BIOINFORMATICS/BTY898},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FortuneW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoxWFV19,
author = {Emma A. Fox and
Alison E. Wright and
Matteo Fumagalli and
Filipe G. Vieira},
title = {ngsLD: evaluating linkage disequilibrium using genotype likelihoods},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3855--3856},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz200},
doi = {10.1093/BIOINFORMATICS/BTZ200},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoxWFV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrainayACGVWCST19,
author = {Cl{\'{e}}ment Frainay and
Sandrine Aros and
Maxime Chazalviel and
Thomas Garcia and
Florence Vinson and
Nicolas Weiss and
Benoit Colsch and
Fr{\'{e}}d{\'{e}}ric Sedel and
Dominique Thabut and
Christophe Junot and
Fabien Jourdan},
title = {MetaboRank: network-based recommendation system to interpret and enrich
metabolomics results},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {274--283},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty577},
doi = {10.1093/BIOINFORMATICS/BTY577},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrainayACGVWCST19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrickeGINM19,
author = {Markus Fricke and
Ruman Gerst and
Bashar Ibrahim and
Michael Niepmann and
Manja Marz},
title = {Global importance of {RNA} secondary structures in protein-coding
sequences},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {579--583},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty678},
doi = {10.1093/BIOINFORMATICS/BTY678},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrickeGINM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FroussiosSMGDSB19,
author = {Kimon Froussios and
Nick J. Schurch and
Katarzyna Mackinnon and
Marek Gierlinski and
C{\'{e}}line Duc and
Gordon G. Simpson and
Geoffrey J. Barton},
title = {How well do RNA-Seq differential gene expression tools perform in
a complex eukaryote? {A} case study in Arabidopsis thaliana},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3372--3377},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz089},
doi = {10.1093/BIOINFORMATICS/BTZ089},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FroussiosSMGDSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuLSMMBSR19,
author = {Jack M. Fu and
Elizabeth J. Leslie and
Alan F. Scott and
Jeffrey C. Murray and
Mary L. Marazita and
Terri H. Beaty and
Robert B. Scharpf and
Ingo Ruczinski},
title = {Detection of de novo copy number deletions from targeted sequencing
of trios},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {571--578},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty677},
doi = {10.1093/BIOINFORMATICS/BTY677},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuLSMMBSR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GabereN19,
author = {Musa Nur Gabere and
William Stafford Noble},
title = {Response to comments on 'Empirical comparison of web-based antimicrobial
peptide prediction tools'},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2695--2696},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1024},
doi = {10.1093/BIOINFORMATICS/BTY1024},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GabereN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GallegoDDO19,
author = {Diego Gallego and
Leonardo Darr{\'{e}} and
Pablo D. Dans and
Modesto Orozco},
title = {VeriNA3d: an {R} package for nucleic acids data mining},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5334--5336},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz553},
doi = {10.1093/BIOINFORMATICS/BTZ553},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GallegoDDO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoH19,
author = {Xiaoyi Raymond Gao and
Hua Huang},
title = {PleioNet: a web-based visualization tool for exploring pleiotropy
across complex traits},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4179--4180},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz179},
doi = {10.1093/BIOINFORMATICS/BTZ179},
timestamp = {Sun, 08 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoHGL19,
author = {Xin Gao and
Deqing Hu and
Madelaine Gogol and
Hua Li},
title = {ClusterMap: compare multiple single cell RNA-Seq datasets across different
experimental conditions},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3038--3045},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz024},
doi = {10.1093/BIOINFORMATICS/BTZ024},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoHGL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoLWX19,
author = {Yan Gao and
Bo Liu and
Yadong Wang and
Yi Xing},
title = {TideHunter: efficient and sensitive tandem repeat detection from noisy
long-reads using seed-and-chain},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i200--i207},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz376},
doi = {10.1093/BIOINFORMATICS/BTZ376},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoLWX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoZ19,
author = {Xin Gao and
Yuan Zhong},
title = {FusionLearn: a biomarker selection algorithm on cross-platform data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4465--4468},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz223},
doi = {10.1093/BIOINFORMATICS/BTZ223},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GarciaJGB19,
author = {Pierre Simon Garcia and
Fr{\'{e}}d{\'{e}}ric Jauffrit and
Christophe Grangeasse and
C{\'{e}}line Brochier{-}Armanet},
title = {GeneSpy, a user-friendly and flexible genomic context visualizer},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {329--331},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty459},
doi = {10.1093/BIOINFORMATICS/BTY459},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GarciaJGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GarciaSCS19,
author = {Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and
Carlos Oscar S{\'{a}}nchez Sorzano and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Joan Segura},
title = {{BIPSPI:} a method for the prediction of partner-specific protein-protein
interfaces},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {470--477},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty647},
doi = {10.1093/BIOINFORMATICS/BTY647},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GarciaSCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GasparHB19,
author = {H{\'{e}}l{\'{e}}na A. Gaspar and
Christopher H{\"{u}}bel and
Gerome Breen},
title = {Drug Targetor: a web interface to investigate the human druggome for
over 500 phenotypes},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2515--2517},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty982},
doi = {10.1093/BIOINFORMATICS/BTY982},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GasparHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GauthierFS19,
author = {Louis Gauthier and
R{\'{e}}micia Di Franco and
Adrian W. R. Serohijos},
title = {SodaPop: a forward simulation suite for the evolutionary dynamics
of asexual populations on protein fitness landscapes},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4053--4062},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz175},
doi = {10.1093/BIOINFORMATICS/BTZ175},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GauthierFS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GayevskiyRDC19,
author = {Velimir Gayevskiy and
Tony Roscioli and
Marcel E. Dinger and
Mark J. Cowley},
title = {Seave: a comprehensive web platform for storing and interrogating
human genomic variation},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {122--125},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty540},
doi = {10.1093/BIOINFORMATICS/BTY540},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GayevskiyRDC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaynorSLQ19,
author = {Sheila M. Gaynor and
Ryan Sun and
Xihong Lin and
John Quackenbush},
title = {Identification of differentially expressed gene sets using the Generalized
Berk-Jones statistic},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4568--4576},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz277},
doi = {10.1093/BIOINFORMATICS/BTZ277},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaynorSLQ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GenoveseMPG19,
author = {Loredana M. Genovese and
Marco M. Mosca and
Marco Pellegrini and
Filippo Geraci},
title = {Dot2dot: accurate whole-genome tandem repeats discovery},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {914--922},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty747},
doi = {10.1093/BIOINFORMATICS/BTY747},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GenoveseMPG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GerstlMRZ19,
author = {Matthias P. Gerstl and
Stefan M{\"{u}}ller and
Georg Regensburger and
J{\"{u}}rgen Zanghellini},
title = {Flux tope analysis: studying the coordination of reaction directions
in metabolic networks},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {266--273},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty550},
doi = {10.1093/BIOINFORMATICS/BTY550},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GerstlMRZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhaemiDCCNLLRMR19,
author = {Mohammad Sajjad Ghaemi and
Daniel B. DiGiulio and
K{\'{e}}vin Contrepois and
Benjamin J. Callahan and
Thuy T. M. Ngo and
Brittany Lee{-}McMullen and
Benoit Lehallier and
Anna Robaczewska and
David Mcilwain and
Yael Rosenberg{-}Hasson and
Ronald J. Wong and
Cecele Quaintance and
Anthony Culos and
Natalie Stanley and
Athena Tanada and
Amy Tsai and
Dyani Gaudilliere and
Edward Ganio and
Xiaoyuan Han and
Kazuo Ando and
Leslie McNeil and
Martha Tingle and
Paul H. Wise and
Ivana Maric and
Marina Sirota and
Tony Wyss{-}Coray and
Virginia D. Winn and
Maurice L. Druzin and
Ronald Gibbs and
Gary L. Darmstadt and
David B. Lewis and
Vahid Partovi Nia and
Bruno Agard and
Robert Tibshirani and
Garry P. Nolan and
Michael P. Snyder and
David A. Relman and
Stephen R. Quake and
Gary M. Shaw and
David K. Stevenson and
Martin S. Angst and
Brice Gaudilliere and
Nima Aghaeepour},
title = {Multiomics modeling of the immunome, transcriptome, microbiome, proteome
and metabolome adaptations during human pregnancy},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {95--103},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty537},
doi = {10.1093/BIOINFORMATICS/BTY537},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhaemiDCCNLLRMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhaffaariM19,
author = {Ali Ghaffaari and
Tobias Marschall},
title = {Fully-sensitive seed finding in sequence graphs using a hybrid index},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i81--i89},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz341},
doi = {10.1093/BIOINFORMATICS/BTZ341},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhaffaariM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhanbariLV19,
author = {Mahsa Ghanbari and
Julia Lasserre and
Martin Vingron},
title = {The Distance Precision Matrix: computing networks from non-linear
relationships},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1009--1017},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty724},
doi = {10.1093/BIOINFORMATICS/BTY724},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhanbariLV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhazanfarSOYP19,
author = {Shila Ghazanfar and
Dario Strbenac and
John T. Ormerod and
Jean Yee Hwa Yang and
Ellis Patrick},
title = {{DCARS:} differential correlation across ranked samples},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {823--829},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty698},
doi = {10.1093/BIOINFORMATICS/BTY698},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhazanfarSOYP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhoshDTC19,
author = {Soumita Ghosh and
Abhik Datta and
Kaisen Tan and
Hyungwon Choi},
title = {{SLIDE} - a web-based tool for interactive visualization of large-scale
- omics data},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {346--348},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty534},
doi = {10.1093/BIOINFORMATICS/BTY534},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhoshDTC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GianiRPSFP19,
author = {Fiorenza Gian{\`{\i}} and
Giulia Russo and
Marzio Pennisi and
Laura Sciacca and
Francesco Frasca and
Francesco Pappalardo},
title = {Computational modeling reveals {MAP3K8} as mediator of resistance
to vemurafenib in thyroid cancer stem cells},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2267--2275},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty969},
doi = {10.1093/BIOINFORMATICS/BTY969},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GianiRPSFP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GibbJMFZ19,
author = {Christopher M. Gibb and
Robert Jackson and
Sabah Mohammed and
Jinan Fiaidhi and
Ingeborg Zehbe},
title = {Pathogen-Host Analysis Tool {(PHAT):} an integrative platform to analyze
next-generation sequencing data},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2665--2667},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1003},
doi = {10.1093/BIOINFORMATICS/BTY1003},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GibbJMFZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GierutDNMS19,
author = {Aleksandra Maria Gierut and
Pawel Dabrowski{-}Tumanski and
Wanda Niemyska and
Kenneth C. Millett and
Joanna I. Sulkowska},
title = {PyLink: a PyMOL plugin to identify links},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3166--3168},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1038},
doi = {10.1093/BIOINFORMATICS/BTY1038},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GierutDNMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiesselmannHMMK19,
author = {Pay Giesselmann and
Sara Hetzel and
Franz{-}Josef M{\"{u}}ller and
Alexander Meissner and
Helene Kretzmer},
title = {Nanopype: a modular and scalable nanopore data processing pipeline},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4536},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz547},
doi = {10.1093/BIOINFORMATICS/BTZ547},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiesselmannHMMK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiesselmannHMMK19a,
author = {Pay Giesselmann and
Sara Hetzel and
Franz{-}Josef M{\"{u}}ller and
Alexander Meissner and
Helene Kretzmer},
title = {Nanopype: a modular and scalable nanopore data processing pipeline},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4770--4772},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz461},
doi = {10.1093/BIOINFORMATICS/BTZ461},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiesselmannHMMK19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilF19,
author = {Nelson Gil and
Andr{\'{a}}s Fiser},
title = {The choice of sequence homologs included in multiple sequence alignments
has a dramatic impact on evolutionary conservation analysis},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {12--19},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty523},
doi = {10.1093/BIOINFORMATICS/BTY523},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiladRCLR19,
author = {Topaz Gilad and
Jos{\'{e}} Reyes and
Jia{-}Yun Chen and
Galit Lahav and
Tammy Riklin Raviv},
title = {Fully unsupervised symmetry-based mitosis detection in time-lapse
cell microscopy},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2644--2653},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1034},
doi = {10.1093/BIOINFORMATICS/BTY1034},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiladRCLR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilbertPNMWKHMT19,
author = {James P. Gilbert and
Nicole Pearcy and
Rupert Norman and
Thomas Millat and
Klaus Winzer and
John R. King and
Charlie Hodgman and
Nigel P. Minton and
Jamie Twycross},
title = {Gsmodutils: a python based framework for test-driven genome scale
metabolic model development},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3397--3403},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz088},
doi = {10.1093/BIOINFORMATICS/BTZ088},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilbertPNMWKHMT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GillbergMMK19,
author = {Jussi Gillberg and
Pekka Marttinen and
Hiroshi Mamitsuka and
Samuel Kaski},
title = {Modelling G{\texttimes}E with historical weather information improves
genomic prediction in new environments},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4045--4052},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz197},
doi = {10.1093/BIOINFORMATICS/BTZ197},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GillbergMMK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GillySSKMMHFRSD19,
author = {Arthur Gilly and
Lorraine Southam and
Daniel Suveges and
Karoline Kuchenbaecker and
Rachel Moore and
Giorgio E. M. Melloni and
Konstantinos Hatzikotoulas and
Aliki{-}Eleni Farmaki and
Graham Ritchie and
Jeremy Schwartzentruber and
Petr Danecek and
Britt Kilian and
Martin O. Pollard and
Xiangyu Ge and
Emmanouil Tsafantakis and
George V. Dedoussis and
Eleftheria Zeggini},
title = {Very low-depth whole-genome sequencing in complex trait association
studies},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2555--2561},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1032},
doi = {10.1093/BIOINFORMATICS/BTY1032},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GillySSKMMHFRSD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlicksbergOTGBJ19,
author = {Benjamin S. Glicksberg and
Boris Oskotsky and
Phyllis M. Thangaraj and
Nicholas Giangreco and
Marcus A. Badgeley and
Kipp W. Johnson and
Debajyoti Datta and
Vivek A. Rudrapatna and
Nadav Rappoport and
Mark M. Shervey and
Riccardo Miotto and
Theodore C. Goldstein and
Eugenia Rutenberg and
Remi Frazier and
Nelson Lee and
Sharat Israni and
Rick Larsen and
Bethany Percha and
Li Li and
Joel T. Dudley and
Nicholas P. Tatonetti and
Atul J. Butte},
title = {PatientExploreR: an extensible application for dynamic visualization
of patient clinical history from electronic health records in the
{OMOP} common data model},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4515--4518},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz409},
doi = {10.1093/BIOINFORMATICS/BTZ409},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlicksbergOTGBJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlushchenkoPOMT19,
author = {Oksana E. Glushchenko and
Nikita A. Prianichnikov and
Evgenii I Olekhnovich and
Alexander I Manolov and
Alexander V. Tyakht and
Elizaveta V. Starikova and
Vera Odintsova and
Elena S. Kostryukova and
Elena Ilina},
title = {{VERA:} agent-based modeling transmission of antibiotic resistance
between human pathogens and gut microbiota},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3803--3811},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz154},
doi = {10.1093/BIOINFORMATICS/BTZ154},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlushchenkoPOMT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GogartenSCYBTRC19,
author = {Stephanie M. Gogarten and
Tamar Sofer and
Han Chen and
Chaoyu Yu and
Jennifer A Brody and
Timothy A Thornton and
Kenneth M. Rice and
Matthew P. Conomos},
title = {Genetic association testing using the {GENESIS} R/Bioconductor package},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5346--5348},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz567},
doi = {10.1093/BIOINFORMATICS/BTZ567},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GogartenSCYBTRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GohrI19,
author = {Andr{\'{e}} Gohr and
Manuel Irimia},
title = {Matt: Unix tools for alternative splicing analysis},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {130--132},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty606},
doi = {10.1093/BIOINFORMATICS/BTY606},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GohrI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GongZZ19,
author = {Sha Gong and
Chengxin Zhang and
Yang Zhang},
title = {RNA-align: quick and accurate alignment of {RNA} 3D structures based
on size-independent TM-scoreRNA},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4459--4461},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz282},
doi = {10.1093/BIOINFORMATICS/BTZ282},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GongZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonnellaNK19,
author = {Giorgio Gonnella and
Niklas Niehus and
Stefan Kurtz},
title = {GfaViz: flexible and interactive visualization of {GFA} sequence graphs},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2853--2855},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1046},
doi = {10.1093/BIOINFORMATICS/BTY1046},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GonnellaNK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gonzalez-PechSC19,
author = {Ra{\'{u}}l A Gonz{\'{a}}lez{-}Pech and
Timothy G. Stephens and
Cheong Xin Chan},
title = {Commonly misunderstood parameters of {NCBI} {BLAST} and important
considerations for users},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2697--2698},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1018},
doi = {10.1093/BIOINFORMATICS/BTY1018},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gonzalez-PechSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gorrie-StoneSSM19,
author = {Tyler J. Gorrie{-}Stone and
Melissa C. Smart and
Ayden Saffari and
Karim Malki and
Eilis J. Hannon and
Joe Burrage and
Jonathan Mill and
Meena Kumari and
Leonard C. Schalkwyk},
title = {Bigmelon: tools for analysing large {DNA} methylation datasets},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {981--986},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty713},
doi = {10.1093/BIOINFORMATICS/BTY713},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gorrie-StoneSSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GourleKHB19,
author = {Hadrien Gourl{\'{e}} and
Oskar Karlsson{-}Lindsj{\"{o}} and
Juliette Hayer and
Erik Bongcam{-}Rudloff},
title = {Simulating Illumina metagenomic data with InSilicoSeq},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {521--522},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty630},
doi = {10.1093/BIOINFORMATICS/BTY630},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GourleKHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GowthamanP19,
author = {Ragul Gowthaman and
Brian G. Pierce},
title = {TCR3d: The {T} cell receptor structural repertoire database},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5323--5325},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz517},
doi = {10.1093/BIOINFORMATICS/BTZ517},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GowthamanP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrabowskiB19,
author = {Szymon Grabowski and
Wojciech Bieniecki},
title = {copMEM: finding maximal exact matches via sampling both genomes},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {677--678},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty670},
doi = {10.1093/BIOINFORMATICS/BTY670},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrabowskiB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrauNK19,
author = {Jan Grau and
Martin Nettling and
Jens Keilwagen},
title = {DepLogo: visualizing sequence dependencies in {R}},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4812--4814},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz507},
doi = {10.1093/BIOINFORMATICS/BTZ507},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrauNK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GreerJ19,
author = {Stephanie U. Greer and
Hanlee P. Ji},
title = {Structural variant analysis for linked-read sequencing data with gemtools},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4397--4399},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz239},
doi = {10.1093/BIOINFORMATICS/BTZ239},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GreerJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GroeneveldCJRPM19,
author = {Clarice S. Groeneveld and
Vinicius S. Chagas and
Steven J. M. Jones and
A. Gordon Robertson and
Bruce A. J. Ponder and
Kerstin B. Meyer and
Mauro A. A. Castro},
title = {RTNsurvival: an R/Bioconductor package for regulatory network survival
analysis},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4488--4489},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz229},
doi = {10.1093/BIOINFORMATICS/BTZ229},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GroeneveldCJRPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrossWYB19,
author = {Torsten Gross and
Matthew Wongchenko and
Yibing Yan and
Nils Bl{\"{u}}thgen},
title = {Robust network inference using response logic},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i634--i642},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz326},
doi = {10.1093/BIOINFORMATICS/BTZ326},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrossWYB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrouxB19,
author = {Romain Groux and
Philipp Bucher},
title = {SPar-K: a method to partition {NGS} signal data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4440--4441},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz416},
doi = {10.1093/BIOINFORMATICS/BTZ416},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrouxB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuM19,
author = {Zhaohui Gu and
Charles Mullighan},
title = {ShinyCNV: a Shiny/R application to view and annotate {DNA} copy number
variations},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {126--129},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty546},
doi = {10.1093/BIOINFORMATICS/BTY546},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuRY19,
author = {Xun Gu and
Hang Ruan and
Jingwen Yang},
title = {Estimating the strength of expression conservation from high throughput
RNA-seq data},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5030--5038},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz405},
doi = {10.1093/BIOINFORMATICS/BTZ405},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuRY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoBRAV19,
author = {Dan Guo and
Kylie A. Bemis and
Catherine Rawlins and
Jeffrey N. Agar and
Olga Vitek},
title = {Unsupervised segmentation of mass spectrometric ion images characterizes
morphology of tissues},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i208--i217},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz345},
doi = {10.1093/BIOINFORMATICS/BTZ345},
timestamp = {Wed, 28 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoBRAV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoW19,
author = {Bin Guo and
Baolin Wu},
title = {Powerful and efficient SNP-set association tests across multiple phenotypes
using {GWAS} summary data},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1366--1372},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty811},
doi = {10.1093/BIOINFORMATICS/BTY811},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoW19a,
author = {Bin Guo and
Baolin Wu},
title = {Integrate multiple traits to detect novel trait-gene association using
{GWAS} summary data with an adaptive test approach},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2251--2257},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty961},
doi = {10.1093/BIOINFORMATICS/BTY961},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoW19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GurinovichBFAMP19,
author = {Anastasia Gurinovich and
Harold Bae and
John J. Farrell and
Stacy Andersen and
Stefano Monti and
Annibale Puca and
Gil Atzmon and
Nir Barzilai and
Thomas T. Perls and
Paola Sebastiani},
title = {PopCluster: an algorithm to identify genetic variants with ethnicity-dependent
effects},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3046--3054},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz017},
doi = {10.1093/BIOINFORMATICS/BTZ017},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GurinovichBFAMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafezQoraniHASK19,
author = {Saber HafezQorani and
Aissa Houdjedj and
Mehmet Arici and
Abdesselam Said and
Hilal Kazan},
title = {RBPSponge: genome-wide identification of lncRNAs that sponge RBPs},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4760--4763},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz448},
doi = {10.1093/BIOINFORMATICS/BTZ448},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HafezQoraniHASK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaghshenasSH19,
author = {Ehsan Haghshenas and
S{\"{u}}leyman Cenk Sahinalp and
Faraz Hach},
title = {lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy
Read sequencing Data},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {20--27},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty544},
doi = {10.1093/BIOINFORMATICS/BTY544},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaghshenasSH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadANRRC19,
author = {Sabri Hamad and
Gianluca Adornetto and
J. Jes{\'{u}}s Naveja and
Aakash Chavan Ravindranath and
Johannes Raffler and
M{\'{o}}nica Campillos},
title = {HitPickV2: a web server to predict targets of chemical compounds},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1239--1240},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty759},
doi = {10.1093/BIOINFORMATICS/BTY759},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadANRRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamidF19,
author = {Md{-}Nafiz Hamid and
Iddo Friedberg},
title = {Identifying antimicrobial peptides using word embedding with deep
recurrent neural networks},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2009--2016},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty937},
doi = {10.1093/BIOINFORMATICS/BTY937},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamidF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HammoudSG19,
author = {Muhsen Hammoud and
Charles Morphy D. Santos and
Jo{\~{a}}o Paulo Gois},
title = {iTUPA: an online automated application to perform Topographic-Unit
Parsimony Analysis},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4818--4820},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz487},
doi = {10.1093/BIOINFORMATICS/BTZ487},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HammoudSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanBZNZXG19,
author = {Renmin Han and
Zhipeng Bao and
Xiangrui Zeng and
Tongxin Niu and
Fa Zhang and
Min Xu and
Xin Gao},
title = {A joint method for marker-free alignment of tilt series in electron
tomography},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i249--i259},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz323},
doi = {10.1093/BIOINFORMATICS/BTZ323},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanBZNZXG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanLWZZW19,
author = {Lei Han and
Lei Li and
Feng Wen and
Lei Zhong and
Tong Zhang and
Xiu{-}Feng Wan},
title = {Graph-guided multi-task sparse learning model: a method for identifying
antigenic variants of influenza {A(H3N2)} virus},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {77--87},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty457},
doi = {10.1093/BIOINFORMATICS/BTY457},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanLWZZW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanWLLYLWSLGZ19,
author = {Renmin Han and
Xiaohua Wan and
Lun Li and
Albert F. Lawrence and
Peng Yang and
Yu Li and
Sheng Wang and
Fei Sun and
Zhiyong Liu and
Xin Gao and
Fa Zhang},
title = {AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment
of dual-axis tilt series with simultaneous reconstruction},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {319--328},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty620},
doi = {10.1093/BIOINFORMATICS/BTY620},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanWLLYLWSLGZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanWZ19,
author = {Xi Han and
Xiaonan Wang and
Kang Zhou},
title = {Develop machine learning-based regression predictive models for engineering
protein solubility},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4640--4646},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz294},
doi = {10.1093/BIOINFORMATICS/BTZ294},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HandlJSEP19,
author = {Lisa Handl and
Adrin Jalali and
Michael Scherer and
Ralf Eggeling and
Nico Pfeifer},
title = {Weighted elastic net for unsupervised domain adaptation with application
to age prediction from {DNA} methylation data},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i154--i163},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz338},
doi = {10.1093/BIOINFORMATICS/BTZ338},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HandlJSEP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HannigGSAAK19,
author = {Jennifer Hannig and
Heiko Giese and
B{\"{o}}rje Schweizer and
Leonie Amstein and
J{\"{o}}rg Ackermann and
Ina Koch},
title = {isiKnock: in silico knockouts in signaling pathways},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {892--894},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty700},
doi = {10.1093/BIOINFORMATICS/BTY700},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HannigGSAAK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HansonPLYZ19,
author = {Jack Hanson and
Kuldip K. Paliwal and
Thomas Litfin and
Yuedong Yang and
Yaoqi Zhou},
title = {Improving prediction of protein secondary structure, backbone angles,
solvent accessibility and contact numbers by using predicted contact
maps and an ensemble of recurrent and residual convolutional neural
networks},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2403--2410},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1006},
doi = {10.1093/BIOINFORMATICS/BTY1006},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HansonPLYZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoCHZH19,
author = {Jie Hao and
Wei Cao and
Jian Huang and
Xin Zou and
Zeguang Han},
title = {Optimal Gene Filtering for Single-Cell data {(OGFSC)} - a gene filtering
algorithm for single-cell RNA-seq data},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2602--2609},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1016},
doi = {10.1093/BIOINFORMATICS/BTY1016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoCHZH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisCM19,
author = {Robert S. Harris and
Monika Cechova and
Kateryna D. Makova},
title = {Noise-cancelling repeat finder: uncovering tandem repeats in error-prone
long-read sequencing data},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4809--4811},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz484},
doi = {10.1093/BIOINFORMATICS/BTZ484},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisCM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HassLRTHK19,
author = {Helge Hass and
Carolin Loos and
Elba Raim{\'{u}}ndez{-}{\'{A}}lvarez and
Jens Timmer and
Jan Hasenauer and
Clemens Kreutz},
title = {Benchmark problems for dynamic modeling of intracellular processes},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3073--3082},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz020},
doi = {10.1093/BIOINFORMATICS/BTZ020},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HassLRTHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HattabN19,
author = {Georges Hattab and
Tim W. Nattkemper},
title = {SeeVis - 3D space-time cube rendering for visualization of microfluidics
image data},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1802--1804},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty889},
doi = {10.1093/BIOINFORMATICS/BTY889},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HattabN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeJZ19,
author = {Wenying He and
Cangzhi Jia and
Quan Zou},
title = {4mCPred: machine learning methods for {DNA} N4-methylcytosine sites
prediction},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {593--601},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty668},
doi = {10.1093/BIOINFORMATICS/BTY668},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeJZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeNSAM19,
author = {Yi He and
Suhani Nagpal and
Mourad Sadqi and
Eva de Alba and
Victor F. Mu{\~{n}}oz},
title = {Glutton: a tool for generating structural ensembles of partly disordered
proteins from chemical shifts},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1234--1236},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty755},
doi = {10.1093/BIOINFORMATICS/BTY755},
timestamp = {Tue, 26 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeNSAM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeTH19,
author = {Jiahua He and
Huanyu Tao and
Sheng{-}You Huang},
title = {Protein-ensemble-RNA docking by efficient consideration of protein
flexibility through homology models},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4994--5002},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz388},
doi = {10.1093/BIOINFORMATICS/BTZ388},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeTH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeWDL19,
author = {Zongxiao He and
Lu Wang and
Andrew Thomas DeWan and
Suzanne M. Leal},
title = {MendelProb: probability and sample size calculations for Mendelian
studies of exome and whole genome sequence data},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {529--531},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty542},
doi = {10.1093/BIOINFORMATICS/BTY542},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeWDL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeinonenOMWKRL19,
author = {Markus Heinonen and
Maria Osmala and
Henrik Mannerstr{\"{o}}m and
Janne Wallenius and
Samuel Kaski and
Juho Rousu and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {Bayesian metabolic flux analysis reveals intracellular flux couplings},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i548--i557},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz315},
doi = {10.1093/BIOINFORMATICS/BTZ315},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeinonenOMWKRL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HellerV19,
author = {David Heller and
Martin Vingron},
title = {{SVIM:} structural variant identification using mapped long reads},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2907--2915},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz041},
doi = {10.1093/BIOINFORMATICS/BTZ041},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HellerV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HennigN19,
author = {Andr{\'{e}} Hennig and
Kay Nieselt},
title = {Efficient merging of genome profile alignments},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i71--i80},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz377},
doi = {10.1093/BIOINFORMATICS/BTZ377},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HennigN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HenningssonF19,
author = {Rasmus Henningsson and
Magnus Fontes},
title = {{SMSSVD:} SubMatrix Selection Singular Value Decomposition},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {478--486},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty566},
doi = {10.1093/BIOINFORMATICS/BTY566},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HenningssonF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hernandez-Ferrer19,
author = {Carles Hernandez{-}Ferrer and
Gregory A. Wellenius and
Ibon Tamayo and
Xavier Basaga{\~{n}}a and
Jordi Sunyer and
Martine Vrijheid and
Juan R. Gonz{\'{a}}lez},
title = {Comprehensive study of the exposome and omic data using rexposome
Bioconductor Packages},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5344--5345},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz526},
doi = {10.1093/BIOINFORMATICS/BTZ526},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Hernandez-Ferrer19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeweltLJKMS19,
author = {Blake Hewelt and
Haiqing Li and
Mohit Kumar Jolly and
Prakash Kulkarni and
Isa Mambetsariev and
Ravi Salgia},
title = {The {DNA} walk and its demonstration of deterministic chaos - relevance
to genomic alterations in lung cancer},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2738--2748},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1021},
doi = {10.1093/BIOINFORMATICS/BTY1021},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeweltLJKMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HigginsRWPIFCC19,
author = {Matthew Higgins and
Matt Ravenhall and
Daniel Ward and
Jody Phelan and
Amy Ibrahim and
Matthew S. Forrest and
Taane G. Clark and
Susana G. Campino},
title = {PrimedRPA: primer design for recombinase polymerase amplification
assays},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {682--684},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty701},
doi = {10.1093/BIOINFORMATICS/BTY701},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HigginsRWPIFCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoarfrostBBA19,
author = {Adrienne Hoarfrost and
Nick Brown and
C. Titus Brown and
Carol Arnosti},
title = {Sequencing data discovery with MetaSeek},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4857--4859},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz499},
doi = {10.1093/BIOINFORMATICS/BTZ499},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoarfrostBBA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HokszaGOSS19,
author = {David Hoksza and
Piotr Gawron and
Marek Ostaszewski and
Ewa Smula and
Reinhard Schneider},
title = {{MINERVA} {API} and plugins: opening molecular network analysis and
visualization to the community},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4496--4498},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz286},
doi = {10.1093/BIOINFORMATICS/BTZ286},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HokszaGOSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HolecBBB19,
author = {Patrick V. Holec and
Joseph Berleant and
Mark Bathe and
Michael E. Birnbaum},
title = {A Bayesian framework for high-throughput {T} cell receptor pairing},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1318--1325},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty801},
doi = {10.1093/BIOINFORMATICS/BTY801},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HolecBBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Holm19,
author = {Liisa Holm},
title = {Benchmarking fold detection by DaliLite v.5},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5326--5327},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz536},
doi = {10.1093/BIOINFORMATICS/BTZ536},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Holm19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HolmerVGBRS19,
author = {Rens Holmer and
Robin van Velzen and
Ren{\'{e}} Geurts and
Ton Bisseling and
Dick de Ridder and
Sandra Smit},
title = {GeneNoteBook, a collaborative notebook for comparative genomics},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4779--4781},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz491},
doi = {10.1093/BIOINFORMATICS/BTZ491},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HolmerVGBRS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HongJL19,
author = {Seung Hwan Hong and
Keehyoung Joo and
Jooyoung Lee},
title = {ConDo: protein domain boundary prediction using coevolutionary information},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2411--2417},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty973},
doi = {10.1093/BIOINFORMATICS/BTY973},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HongJL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HongOPY19,
author = {Hoon Hong and
Alexey Ovchinnikov and
Gleb Pogudin and
Chee Yap},
title = {{SIAN:} software for structural identifiability analysis of {ODE}
models},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2873--2874},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1069},
doi = {10.1093/BIOINFORMATICS/BTY1069},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HongOPY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HopfGSMSITBRPKS19,
author = {Thomas A. Hopf and
Anna G. Green and
Benjamin Schubert and
Sophia Mersmann and
Charlotta Sch{\"{a}}rfe and
John Ingraham and
{\'{A}}gnes T{\'{o}}th{-}Petr{\'{o}}czy and
Kelly Brock and
Adam J. Riesselman and
Perry Palmedo and
Chan Kang and
Robert P. Sheridan and
Eli J. Draizen and
Christian Dallago and
Chris Sander and
Debora S. Marks},
title = {The EVcouplings Python framework for coevolutionary sequence analysis},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1582--1584},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty862},
doi = {10.1093/BIOINFORMATICS/BTY862},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HopfGSMSITBRPKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HorskyBTKV19,
author = {Vladim{\'{\i}}r Horsk{\'{y}} and
Veronika Bendov{\'{a}} and
Dominik Tousek and
Jaroslav Koca and
Radka Svobodov{\'{a}} Varekov{\'{a}}},
title = {ValTrendsDB: bringing Protein Data Bank validation information closer
to the user},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5389--5390},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz532},
doi = {10.1093/BIOINFORMATICS/BTZ532},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HorskyBTKV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HosseiniDMB19,
author = {Sayed{-}Rzgar Hosseini and
Ram{\'{o}}n D{\'{\i}}az{-}Uriarte and
Florian Markowetz and
Niko Beerenwinkel},
title = {Estimating the predictability of cancer evolution},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i389--i397},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz332},
doi = {10.1093/BIOINFORMATICS/BTZ332},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HosseiniDMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HosseiniPP19,
author = {Seyed Morteza Hosseini and
Diogo Pratas and
Armando J. Pinho},
title = {Cryfa: a secure encryption tool for genomic data},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {146--148},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty645},
doi = {10.1093/BIOINFORMATICS/BTY645},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HosseiniPP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouDF19,
author = {Rui Hou and
Elena Denisenko and
Alistair R. R. Forrest},
title = {scMatch: a single-cell gene expression profile annotation tool using
reference datasets},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4688--4695},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz292},
doi = {10.1093/BIOINFORMATICS/BTZ292},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouDF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouGGAHF19,
author = {Qingzhen Hou and
Paul F. G. De Geest and
Christian J. Griffioen and
Sanne Abeln and
Jaap Heringa and
K. Anton Feenstra},
title = {SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate
predictions of {PPI} interface positions},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4794--4796},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz428},
doi = {10.1093/BIOINFORMATICS/BTZ428},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouGGAHF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HowisonCK19,
author = {Mark Howison and
Mia Coetzer and
Rami Kantor},
title = {Measurement error and variant-calling in deep Illumina sequencing
of {HIV}},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2029--2035},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty919},
doi = {10.1093/BIOINFORMATICS/BTY919},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HowisonCK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuGB19,
author = {Zicheng Hu and
Benjamin S. Glicksberg and
Atul J. Butte},
title = {Robust prediction of clinical outcomes using cytometry data},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1197--1203},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty768},
doi = {10.1093/BIOINFORMATICS/BTY768},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuWHWCXWZHZ19,
author = {Yan Hu and
Ziqiang Wang and
Hailin Hu and
Fangping Wan and
Lin Chen and
Yuanpeng Xiong and
Xiaoxia Wang and
Dan Zhao and
Weiren Huang and
Jianyang Zeng},
title = {{ACME:} pan-specific peptide-MHC class {I} binding prediction through
attention-based deep neural networks},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4946--4954},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz427},
doi = {10.1093/BIOINFORMATICS/BTZ427},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuWHWCXWZHZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuWOWK19,
author = {Gang Hu and
Zhonghua Wu and
Christopher J. Oldfield and
Chen Wang and
Lukasz A. Kurgan},
title = {Quality assessment for the putative intrinsic disorder in proteins},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1692--1700},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty881},
doi = {10.1093/BIOINFORMATICS/BTY881},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuWOWK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuXZLSJZZZ19,
author = {Hailin Hu and
An Xiao and
Sai Zhang and
Yangyang Li and
Xuanling Shi and
Tao Jiang and
Linqi Zhang and
Lei Zhang and
Jianyang Zeng},
title = {DeepHINT: understanding {HIV-1} integration via deep learning with
attention},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1660--1667},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty842},
doi = {10.1093/BIOINFORMATICS/BTY842},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuXZLSJZZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangBSMYHTZKDW19,
author = {Lei Huang and
David Brunell and
Clifford Stephan and
James J. Mancuso and
Xiaohui Yu and
Bin He and
Timothy C. Thompson and
Ralph Zinner and
Jeri Kim and
Peter Davies and
Stephen T. C. Wong},
title = {Driver network as a biomarker: systematic integration and network
modeling of multi-omics data to derive driver signaling pathways for
drug combination prediction},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3709--3717},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz109},
doi = {10.1093/BIOINFORMATICS/BTZ109},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangBSMYHTZKDW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangGLJLHZZCBL19,
author = {Xin Huang and
Xudong Gao and
Wanying Li and
Shuai Jiang and
Ruijiang Li and
Hao Hong and
Chenghui Zhao and
Pingkun Zhou and
Hebing Chen and
Xiaochen Bo and
Hao Li},
title = {Stable H3K4me3 is associated with transcription initiation during
early embryo development},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3931--3936},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz173},
doi = {10.1093/BIOINFORMATICS/BTZ173},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangGLJLHZZCBL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangGMBCS19,
author = {Weitai Huang and
Yu Amanda Guo and
Karthik Muthukumar and
Probhonjon Baruah and
Mei Mei Chang and
Anders Jacobsen Skanderup},
title = {SMuRF: portable and accurate ensemble prediction of somatic mutations},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3157--3159},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz018},
doi = {10.1093/BIOINFORMATICS/BTZ018},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangGMBCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangHGJLL19,
author = {Rongting Huang and
Yuanhua Huang and
Yubin Guo and
Shangwei Ji and
Ming Lu and
Tingting Li},
title = {Systematic characterization and prediction of post-translational modification
cross-talk between proteins},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2626--2633},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1033},
doi = {10.1093/BIOINFORMATICS/BTY1033},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangHGJLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangYYFI19,
author = {Meiyan Huang and
Yuwei Yu and
Wei Yang and
Qianjin Feng and
Alzheimer's Disease Neuroimaging Initiative},
title = {Incorporating spatial-anatomical similarity into the {VGWAS} framework
for {AD} biomarker detection},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5271--5280},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz401},
doi = {10.1093/BIOINFORMATICS/BTZ401},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangYYFI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangZDZLHM19,
author = {Liang Huang and
He Zhang and
Dezhong Deng and
Kai Zhao and
Kaibo Liu and
David A. Hendrix and
David H. Mathews},
title = {LinearFold: linear-time approximate {RNA} folding by 5'-to-3' dynamic
programming and beam search},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i295--i304},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz375},
doi = {10.1093/BIOINFORMATICS/BTZ375},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangZDZLHM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuesslerSSL19,
author = {Eva{-}Maria Huessler and
Martin Sch{\"{a}}fer and
Holger Schwender and
Pablo Landgraf},
title = {BayMAP: a Bayesian hierarchical model for the analysis of {PAR-CLIP}
data},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {1992--2000},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty904},
doi = {10.1093/BIOINFORMATICS/BTY904},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuesslerSSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HughesT19,
author = {Graham M. Hughes and
Emma C. Teeling},
title = {{AGILE:} an assembled genome mining pipeline},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1252--1254},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty781},
doi = {10.1093/BIOINFORMATICS/BTY781},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HughesT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HungLSRXSY19,
author = {Ling{-}Hong Hung and
Wes Lloyd and
Radhika Agumbe Sridhar and
Saranya Devi Athmalingam Ravishankar and
Yuguang Xiong and
Eric Sobie and
Ka Yee Yeung},
title = {Holistic optimization of an RNA-seq workflow for multi-threaded environments},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4173--4175},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz169},
doi = {10.1093/BIOINFORMATICS/BTZ169},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HungLSRXSY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuntFBG19,
author = {Gregory J. Hunt and
Saskia Freytag and
Melanie Bahlo and
Johann Gagnon{-}Bartsch},
title = {dtangle: accurate and robust cell type deconvolution},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2093--2099},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty926},
doi = {10.1093/BIOINFORMATICS/BTY926},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuntFBG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HusicLHMRMMT19,
author = {Edin Husic and
Xinyue Li and
Ademir Hujdurovic and
Miika Mehine and
Romeo Rizzi and
Veli M{\"{a}}kinen and
Martin Milanic and
Alexandru I. Tomescu},
title = {{MIPUP:} minimum perfect unmixed phylogenies for multi-sampled tumors
via branchings and {ILP}},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {769--777},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty683},
doi = {10.1093/BIOINFORMATICS/BTY683},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HusicLHMRMMT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IngleseCTNG19,
author = {Paolo Inglese and
Gon{\c{c}}alo D. S. Correia and
Zoltan Takats and
Jeremy K. Nicholson and
Robert C. Glen},
title = {{SPUTNIK:} an {R} package for filtering of spatially related peaks
in mass spectrometry imaging data},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {178--180},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty622},
doi = {10.1093/BIOINFORMATICS/BTY622},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IngleseCTNG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/InmanSBBCF19,
author = {Jason M. Inman and
Granger G. Sutton and
Erin Beck and
Lauren M. Brinkac and
Thomas H. Clarke and
Derrick E. Fouts},
title = {Large-scale comparative analysis of microbial pan-genomes using PanOCT},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1049--1050},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty744},
doi = {10.1093/BIOINFORMATICS/BTY744},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/InmanSBBCF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IwataYZTBSAHY19,
author = {Michio Iwata and
Longhao Yuan and
Qibin Zhao and
Yasuo Tabei and
Francois Berenger and
Ryusuke Sawada and
Sayaka Akiyoshi and
Momoko Hamano and
Yoshihiro Yamanishi},
title = {Predicting drug-induced transcriptome responses of a wide range of
human cell lines by a novel tensor-train decomposition algorithm},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i191--i199},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz313},
doi = {10.1093/BIOINFORMATICS/BTZ313},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IwataYZTBSAHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JackW19,
author = {Benjamin R. Jack and
Claus O. Wilke},
title = {Pinetree: a step-wise gene expression simulator with codon-specific
translation rates},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4176--4178},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz203},
doi = {10.1093/BIOINFORMATICS/BTZ203},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JackW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JackmanMCOBBJ19,
author = {Shaun D. Jackman and
Tatyana Mozgacheva and
Susie Chen and
Brendan O'Huiginn and
Lance Bailey and
Inan{\c{c}} Birol and
Steven J. M. Jones},
title = {{ORCA:} a comprehensive bioinformatics container environment for education
and research},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4448--4450},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz278},
doi = {10.1093/BIOINFORMATICS/BTZ278},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JackmanMCOBBJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JacquinOL19,
author = {Adrien L. S. Jacquin and
Duncan T. Odom and
Margus Lukk},
title = {Crisflash: open-source software to generate {CRISPR} guide RNAs against
genomes annotated with individual variation},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3146--3147},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz019},
doi = {10.1093/BIOINFORMATICS/BTZ019},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JacquinOL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JainK19,
author = {Aashish Jain and
Daisuke Kihara},
title = {Phylo-PFP: improved automated protein function prediction using phylogenetic
distance of distantly related sequences},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {753--759},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty704},
doi = {10.1093/BIOINFORMATICS/BTY704},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JainK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JainT19,
author = {Ashish Jain and
Geetu Tuteja},
title = {TissueEnrich: Tissue-specific gene enrichment analysis},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1966--1967},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty890},
doi = {10.1093/BIOINFORMATICS/BTY890},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JainT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JakobiUD19,
author = {Tobias Jakobi and
Alexey Uvarovskii and
Christoph Dieterich},
title = {circtools - a one-stop software solution for circular {RNA} research},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2326--2328},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty948},
doi = {10.1093/BIOINFORMATICS/BTY948},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JakobiUD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JakubecVF19,
author = {David Jakubec and
Jir{\'{\i}} Vondr{\'{a}}sek and
Robert D. Finn},
title = {3DPatch: fast 3D structure visualization with residue conservation},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {332--334},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty464},
doi = {10.1093/BIOINFORMATICS/BTY464},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JakubecVF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JakubekLS19,
author = {Yasminka A Jakubek and
F. Anthony San Lucas and
Paul Scheet},
title = {Directional allelic imbalance profiling and visualization from multi-sample
data with {RECUR}},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2300--2302},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty885},
doi = {10.1093/BIOINFORMATICS/BTY885},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JakubekLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JangL19,
author = {Ho Jang and
Hyunju Lee},
title = {Multiresolution correction of {GC} bias and application to identification
of copy number alterations},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3890--3897},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz174},
doi = {10.1093/BIOINFORMATICS/BTZ174},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JangL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JangSJLKL19,
author = {Yeongjun Jang and
Jihae Seo and
Insu Jang and
Byungwook Lee and
Sun Kim and
Sanghyuk Lee},
title = {CaPSSA: visual evaluation of cancer biomarker genes for patient stratification
and survival analysis using mutation and expression data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5341--5343},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz516},
doi = {10.1093/BIOINFORMATICS/BTZ516},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JangSJLKL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JankauskaiteJDF19,
author = {Justina Jankauskaite and
Brian Jim{\'{e}}nez{-}Garc{\'{\i}}a and
Justas Dapkunas and
Juan Fern{\'{a}}ndez{-}Recio and
Iain H. Moal},
title = {{SKEMPI} 2.0: an updated benchmark of changes in protein-protein binding
energy, kinetics and thermodynamics upon mutation},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {462--469},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty635},
doi = {10.1093/BIOINFORMATICS/BTY635},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JankauskaiteJDF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeitzinerCROHB19,
author = {Rachel Jeitziner and
Mathieu Carri{\`{e}}re and
Jacques Rougemont and
Steve Oudot and
Kathryn Hess and
Cathrin Brisken},
title = {Two-Tier Mapper, an unbiased topology-based clustering method for
enhanced global gene expression analysis},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3339--3347},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz052},
doi = {10.1093/BIOINFORMATICS/BTZ052},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeitzinerCROHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JelinekP19,
author = {Jan Jel{\'{\i}}nek and
Josef P{\'{a}}nek},
title = {cpPredictor: a web server for template-based prediction of {RNA} secondary
structure},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1231--1233},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty753},
doi = {10.1093/BIOINFORMATICS/BTY753},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JelinekP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeonK19,
author = {Woosung Jeon and
Dongsup Kim},
title = {{FP2VEC:} a new molecular featurizer for learning molecular properties},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4979--4985},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz307},
doi = {10.1093/BIOINFORMATICS/BTZ307},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeonK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeonPLJKKCTK19,
author = {Minji Jeon and
Donghyeon Park and
Jinhyuk Lee and
Hwisang Jeon and
Miyoung Ko and
Sunkyu Kim and
Yonghwa Choi and
Aik Choon Tan and
Jaewoo Kang},
title = {ReSimNet: drug response similarity prediction using Siamese neural
networks},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5249--5256},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz411},
doi = {10.1093/BIOINFORMATICS/BTZ411},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeonPLJKKCTK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeskeHSHWBWSKBH19,
author = {Tim Jeske and
Peter Huypens and
Laura Stirm and
Selina H{\"{o}}ckele and
Christine M. Wurmser and
Anja B{\"{o}}hm and
Cora Weigert and
Harald Staiger and
Christoph Klein and
Johannes Beckers and
Maximilian Hastreiter},
title = {{DEUS:} an {R} package for accurate small {RNA} profiling based on
differential expression of unique sequences},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4834--4836},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz495},
doi = {10.1093/BIOINFORMATICS/BTZ495},
timestamp = {Fri, 26 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeskeHSHWBWSKBH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiYSCHW19,
author = {Guoli Ji and
Wenbin Ye and
Yaru Su and
Moliang Chen and
Guangzao Huang and
Xiaohui Wu},
title = {AStrap: identification of alternative splicing from transcript sequences
without a reference genome},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2654--2656},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1008},
doi = {10.1093/BIOINFORMATICS/BTY1008},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiYSCHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaPZ19,
author = {Peilin Jia and
Guangsheng Pei and
Zhongming Zhao},
title = {CNet: a multi-omics approach to detecting clinically associated, combinatory
genomic signatures},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5207--5215},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz441},
doi = {10.1093/BIOINFORMATICS/BTZ441},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaPZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangLLW19,
author = {Tao Jiang and
Bo Liu and
Junyi Li and
Yadong Wang},
title = {rMETL: sensitive mobile element insertion detection with long read
realignment},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3484--3486},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz106},
doi = {10.1093/BIOINFORMATICS/BTZ106},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangLLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangLWDSTCWZ19,
author = {Peng Jiang and
Jie Luo and
Yiqi Wang and
Pingji Deng and
Bertil Schmidt and
Xiangjun Tang and
Ningjiang Chen and
Limsoon Wong and
Liang Zhao},
title = {kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4871--4878},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz299},
doi = {10.1093/BIOINFORMATICS/BTZ299},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangLWDSTCWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaoYXSTTWJHDWX19,
author = {Chuan Jiao and
Pengpeng Yan and
Cuihua Xia and
Zhaoming Shen and
Zexi Tan and
Yanyan Tan and
Kangli Wang and
Yi Jiang and
Lingling Huang and
Rujia Dai and
Yu Wei and
Yan Xia and
Qingtuan Meng and
Yanmei Ouyang and
Liu Yi and
Fangyuan Duan and
Jiacheng Dai and
Shunan Zhao and
Chunyu Liu and
Chao Chen},
title = {BrainEXP: a database featuring with spatiotemporal expression variations
and co-expression organizations in human brains},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {172--174},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty576},
doi = {10.1093/BIOINFORMATICS/BTY576},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaoYXSTTWJHDWX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jimenez-GarciaE19,
author = {Brian Jim{\'{e}}nez{-}Garc{\'{\i}}a and
Katarina Elez and
Panagiotis I. Koukos and
Alexandre M. J. J. Bonvin and
Anna Vangone},
title = {PRODIGY-crystal: a web-tool for classification of biological interfaces
in protein complexes},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4821--4823},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz437},
doi = {10.1093/BIOINFORMATICS/BTZ437},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JimenezJMOVMMRM19,
author = {Amaya Jim{\'{e}}nez and
Slavica Jonic and
Tom{\'{a}}s Majtner and
Joaqu{\'{\i}}n Ot{\'{o}}n and
Jose Luis Vilas and
David Maluenda and
Javier Mota and
Erney Ram{\'{\i}}rez{-}Aportela and
Marta Mart{\'{\i}}nez and
Yaiza Rancel and
Joan Segura and
Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and
Roberto Melero and
Laura del Cano and
Pablo Conesa and
Lars Skjaerven and
Roberto Marabini and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Carlos Oscar S{\'{a}}nchez Sorzano},
title = {Validation of electron microscopy initial models via small angle X-ray
scattering curves},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2427--2433},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty985},
doi = {10.1093/BIOINFORMATICS/BTY985},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JimenezJMOVMMRM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinLZFWDH19,
author = {Linfang Jin and
Jinhuo Lai and
Yang Zhang and
Ying Fu and
Shuhang Wang and
Heng Dai and
Bingding Huang},
title = {BreakID: genomics breakpoints identification to detect gene fusion
events using discordant pairs and split reads},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2859--2861},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1070},
doi = {10.1093/BIOINFORMATICS/BTY1070},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinLZFWDH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinZFZY19,
author = {Zan{-}Xia Jin and
Bo{-}Wen Zhang and
Fan Fang and
Le{-}Le Zhang and
Xu{-}Cheng Yin},
title = {Health assistant: answering your questions anytime from biomedical
literature},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4129--4139},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz195},
doi = {10.1093/BIOINFORMATICS/BTZ195},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinZFZY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JohnsonWHYWHZHZ19,
author = {Travis S. Johnson and
Tongxin Wang and
Zhi Huang and
Christina Y. Yu and
Yi Wu and
Yatong Han and
Yan Zhang and
Kun Huang and
Jie Zhang},
title = {LAmbDA: label ambiguous domain adaptation dataset integration reduces
batch effects and improves subtype detection},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4696--4706},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz295},
doi = {10.1093/BIOINFORMATICS/BTZ295},
timestamp = {Mon, 20 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JohnsonWHYWHZHZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JulienneSPA19,
author = {Hanna Julienne and
Huwenbo Shi and
Bogdan Pasaniuc and
Hugues Aschard},
title = {{RAISS:} robust and accurate imputation from summary statistics},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4837--4839},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz466},
doi = {10.1093/BIOINFORMATICS/BTZ466},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JulienneSPA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jung19,
author = {Sungwon Jung},
title = {{KEDDY:} a knowledge-based statistical gene set test method to detect
differential functional protein-protein interactions},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {619--627},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty686},
doi = {10.1093/BIOINFORMATICS/BTY686},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jung19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungKPKYL19,
author = {Jinmyung Jung and
Yeeok Kang and
Hyojung Paik and
Mijin Kwon and
Hasun Yu and
Doheon Lee},
title = {Deconvoluting essential gene signatures for cancer growth from genomic
expression in compound-treated cells},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1167--1173},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty774},
doi = {10.1093/BIOINFORMATICS/BTY774},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungKPKYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungKY19,
author = {Jaehee Jung and
Jong Im Kim and
Gangman Yi},
title = {geneCo: a visualized comparative genomic method to analyze multiple
genome structures},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5303--5305},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz596},
doi = {10.1093/BIOINFORMATICS/BTZ596},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungKY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuulMGBHKP19,
author = {Malene Juul and
Tobias Madsen and
Qianyun Guo and
Johanna Bertl and
Asger Hobolth and
Manolis Kellis and
Jakob Skou Pedersen},
title = {ncdDetect2: improved models of the site-specific mutation rate in
cancer and driver detection with robust significance evaluation},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {189--199},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty511},
doi = {10.1093/BIOINFORMATICS/BTY511},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuulMGBHKP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalkatawiMJB19,
author = {Manal Kalkatawi and
Arturo Magana{-}Mora and
Boris R. Jankovic and
Vladimir B. Bajic},
title = {DeepGSR: an optimized deep-learning structure for the recognition
of genomic signals and regions},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1125--1132},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty752},
doi = {10.1093/BIOINFORMATICS/BTY752},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalkatawiMJB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamalabadHTG19,
author = {Mahdi Shafiee Kamalabad and
Alexander Martin Heberle and
Kathrin Thedieck and
Marco Grzegorczyk},
title = {Partially non-homogeneous dynamic Bayesian networks based on Bayesian
regression models with partitioned design matrices},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2108--2117},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty917},
doi = {10.1093/BIOINFORMATICS/BTY917},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamalabadHTG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamatBYSBDBS19,
author = {Mihir A. Kamat and
James A. Blackshaw and
Robin Young and
Praveen Surendran and
Stephen Burgess and
John Danesh and
Adam S. Butterworth and
James R. Staley},
title = {PhenoScanner {V2:} an expanded tool for searching human genotype-phenotype
associations},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4851--4853},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz469},
doi = {10.1093/BIOINFORMATICS/BTZ469},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamatBYSBDBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kanaan-Izquierdo19,
author = {Samir Kanaan{-}Izquierdo and
Andrey Ziyatdinov and
Maria Araceli Burgue{\~{n}}o and
Alexandre Perera{-}Lluna},
title = {Multiview: a software package for multiview pattern recognition methods},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2877--2879},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1039},
doi = {10.1093/BIOINFORMATICS/BTY1039},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kanaan-Izquierdo19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KanduriBGHS19,
author = {Chakravarthi Kanduri and
Christoph Bock and
Sveinung Gundersen and
Eivind Hovig and
Geir Kjetil Sandve},
title = {Colocalization analyses of genomic elements: approaches, recommendations
and challenges},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1615--1624},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty835},
doi = {10.1093/BIOINFORMATICS/BTY835},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KanduriBGHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KanterDK19,
author = {Itamar Kanter and
Piero Dalerba and
Tomer Kalisky},
title = {A cluster robustness score for identifying cell subpopulations in
single cell gene expression datasets from heterogeneous tissues and
tumors},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {962--971},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty708},
doi = {10.1093/BIOINFORMATICS/BTY708},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KanterDK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarasikovPG19,
author = {Mikhail Karasikov and
Guillaume Pag{\`{e}}s and
Sergei Grudinin},
title = {Smooth orientation-dependent scoring function for coarse-grained protein
quality assessment},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2801--2808},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1037},
doi = {10.1093/BIOINFORMATICS/BTY1037},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarasikovPG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarimiWWS19,
author = {Mostafa Karimi and
Di Wu and
Zhangyang Wang and
Yang Shen},
title = {DeepAffinity: interpretable deep learning of compound-protein affinity
through unified recurrent and convolutional neural networks},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3329--3338},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz111},
doi = {10.1093/BIOINFORMATICS/BTZ111},
timestamp = {Fri, 01 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarimiWWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KawakuboMKOS19,
author = {Hideko Kawakubo and
Yusuke Matsui and
Itaru Kushima and
Norio Ozaki and
Teppei Shimamura},
title = {A network of networks approach for modeling interconnected brain tissue-specific
networks},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3092--3101},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz032},
doi = {10.1093/BIOINFORMATICS/BTZ032},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KawakuboMKOS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KawamuraKY19,
author = {Yumi Kawamura and
Shinsuke Koyama and
Ryo Yoshida},
title = {Statistical inference of the rate of {RNA} polymerase {II} elongation
by total {RNA} sequencing},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1877--1884},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty886},
doi = {10.1093/BIOINFORMATICS/BTY886},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KawamuraKY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KelleherLABDGGG19,
author = {Jerome Kelleher and
Mike Lin and
Carl H. Albach and
Ewan Birney and
Robert Davies and
Marina Gourtovaia and
David Glazer and
Cristina Y. Gonz{\'{a}}lez and
David K. Jackson and
Aaron Kemp and
John Marshall and
Andrew Nowak and
Alexander Senf and
Jaime M. Tovar{-}Corona and
Alexander Vikhorev and
Thomas M. Keane and
GA4GH Streaming Task Team},
title = {htsget: a protocol for securely streaming genomic data},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {119--121},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty492},
doi = {10.1093/BIOINFORMATICS/BTY492},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KelleherLABDGGG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KellerCB19,
author = {Andrew Keller and
Juan D. Chavez and
James E. Bruce},
title = {Increased sensitivity with automated validation of {XL-MS} cleavable
peptide crosslinks},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {895--897},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty720},
doi = {10.1093/BIOINFORMATICS/BTY720},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KellerCB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Khakabimamaghani19,
author = {Sahand Khakabimamaghani and
Salem Malikic and
Jeffrey Tang and
Dujian Ding and
Ryan D. Morin and
Leonid Chindelevitch and
Martin Ester},
title = {Collaborative intra-tumor heterogeneity detection},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i379--i388},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz355},
doi = {10.1093/BIOINFORMATICS/BTZ355},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Khakabimamaghani19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Khakabimamaghani19a,
author = {Sahand Khakabimamaghani and
Yogeshwar D. Kelkar and
Bruno M. Grande and
Ryan D. Morin and
Martin Ester and
Daniel Ziemek},
title = {{SUBSTRA:} Supervised Bayesian Patient Stratification},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3263--3272},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz112},
doi = {10.1093/BIOINFORMATICS/BTZ112},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Khakabimamaghani19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanJRBK19,
author = {Ishita K. Khan and
Aashish Jain and
Reda Rawi and
Halima Bensmail and
Daisuke Kihara},
title = {Prediction of protein group function by iterative classification on
functional relevance network},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1388--1394},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty787},
doi = {10.1093/BIOINFORMATICS/BTY787},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanJRBK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhatamianPCY19,
author = {Alireza Khatamian and
Evan O. Paull and
Andrea Califano and
Jiyang Yu},
title = {SJARACNe: a scalable software tool for gene network reverse engineering
from big data},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2165--2166},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty907},
doi = {10.1093/BIOINFORMATICS/BTY907},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhatamianPCY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhaterMNH19,
author = {Ismail M. Khater and
Fanrui Meng and
Ivan Robert Nabi and
Ghassan Hamarneh},
title = {Identification of caveolin-1 domain signatures via machine learning
and graphlet analysis of single-molecule super-resolution data},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3468--3475},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz113},
doi = {10.1093/BIOINFORMATICS/BTZ113},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhaterMNH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhoonsariMBBCCC19,
author = {Payam Emami Khoonsari and
Pablo A. Moreno and
Sven Bergmann and
Joachim Burman and
Marco Capuccini and
Matteo Carone and
Marta Cascante and
Pedro de Atauri and
Carles Foguet and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Thomas Hankemeier and
Kenneth Haug and
Sijin He and
Stephanie Herman and
David Johnson and
Namrata Kale and
Anders Larsson and
Steffen Neumann and
Kristian Peters and
Luca Pireddu and
Philippe Rocca{-}Serra and
Pierrick Roger and
Rico Rueedi and
Christoph Ruttkies and
Noureddin Sadawi and
Reza M. Salek and
Susanna{-}Assunta Sansone and
Daniel Schober and
Vitaly A. Selivanov and
Etienne A. Th{\'{e}}venot and
Michael van Vliet and
Gianluigi Zanetti and
Christoph Steinbeck and
Kim Kultima and
Ola Spjuth},
title = {Interoperable and scalable data analysis with microservices: applications
in metabolomics},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3752--3760},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz160},
doi = {10.1093/BIOINFORMATICS/BTZ160},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhoonsariMBBCCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhoshdeliWP19,
author = {Mina Khoshdeli and
Garrett Winkelmaier and
Bahram Parvin},
title = {Deep fusion of contextual and object-based representations for delineation
of multiple nuclear phenotypes},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4860--4861},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz430},
doi = {10.1093/BIOINFORMATICS/BTZ430},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhoshdeliWP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimBRPBY19,
author = {Sun{-}Ah Kim and
Myriam Brossard and
Delnaz Roshandel and
Andrew D. Paterson and
Shelley B. Bull and
Yun Joo Yoo},
title = {gpart: human genome partitioning and visualization of high-density
{SNP} data by identifying haplotype blocks},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4419--4421},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz308},
doi = {10.1093/BIOINFORMATICS/BTZ308},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimBRPBY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimDZZSLKUBXZ19,
author = {Bongsong Kim and
Xinbin Dai and
Wenchao Zhang and
Zhaohong Zhuang and
Darlene L. Sanchez and
Thomas L{\"{u}}bberstedt and
Yun Kang and
Michael K. Udvardi and
William D. Beavis and
Shizhong Xu and
Patrick X. Zhao},
title = {GWASpro: a high-performance genome-wide association analysis server},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2512--2514},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty989},
doi = {10.1093/BIOINFORMATICS/BTY989},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimDZZSLKUBXZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimID19,
author = {Eunji Kim and
Ivan Ivanov and
Edward R. Dougherty},
title = {Quantifying the notions of canalizing and master genes in a gene regulatory
network - a Boolean network modeling perspective},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {643--649},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty665},
doi = {10.1093/BIOINFORMATICS/BTY665},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimID19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimMARDBM19,
author = {Chang Sik Kim and
Sumitra Mohan and
Mahmood Ayub and
Dominic G. Rothwell and
Caroline Dive and
Ged Brady and
Crispin J. Miller},
title = {In silico error correction improves cfDNA mutation calling},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2380--2385},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1004},
doi = {10.1093/BIOINFORMATICS/BTY1004},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimMARDBM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimWFOCC19,
author = {Jin{-}Dong Kim and
Yue Wang and
Toyofumi Fujiwara and
Shujiro Okuda and
Tiffany J. Callahan and
K. Bretonnel Cohen},
title = {Open Agile text mining for bioinformatics: the PubAnnotation ecosystem},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4372--4380},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz227},
doi = {10.1093/BIOINFORMATICS/BTZ227},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimWFOCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimesR19,
author = {Patrick K. Kimes and
Alejandro Reyes},
title = {Reproducible and replicable comparisons using SummarizedBenchmark},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {137--139},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty627},
doi = {10.1093/BIOINFORMATICS/BTY627},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimesR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirkpatrickGW19,
author = {Brent Kirkpatrick and
Shufei Ge and
Liangliang Wang},
title = {Efficient computation of the kinship coefficients},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1002--1008},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty725},
doi = {10.1093/BIOINFORMATICS/BTY725},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirkpatrickGW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KitsonS19,
author = {Ezra Kitson and
Curtis A Suttle},
title = {VHost-Classifier: virus-host classification using natural language
processing},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3867--3869},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz151},
doi = {10.1093/BIOINFORMATICS/BTZ151},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KitsonS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlesmithH19,
author = {Justin R. Klesmith and
Benjamin J. Hackel},
title = {Improved mutant function prediction via {PACT:} Protein Analysis and
Classifier Toolkit},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2707--2712},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1042},
doi = {10.1093/BIOINFORMATICS/BTY1042},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlesmithH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlukowskiS19,
author = {Piotr Klukowski and
Mario Schubert},
title = {Chemical shift-based identification of monosaccharide spin-systems
with {NMR} spectroscopy to complement untargeted glycomics},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {293--300},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty465},
doi = {10.1093/BIOINFORMATICS/BTY465},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlukowskiS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoellingBCMMRGW19,
author = {Nils Koelling and
Marie Bernkopf and
Eduardo Calpena and
Geoffrey J. Maher and
Kerry A. Miller and
Hannah K. Ralph and
Anne Goriely and
Andrew O. M. Wilkie},
title = {amplimap: a versatile tool to process and analyze targeted {NGS} data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5349--5350},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz582},
doi = {10.1093/BIOINFORMATICS/BTZ582},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoellingBCMMRGW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KooB19,
author = {Da Chen Emily Koo and
Richard Bonneau},
title = {Towards region-specific propagation of protein functions},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1737--1744},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty834},
doi = {10.1093/BIOINFORMATICS/BTY834},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KooB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Koohi-MoghadamB19,
author = {Mohamad Koohi{-}Moghadam and
Mitesh J. Borad and
Nhan L. Tran and
Kristin R. Swanson and
Lisa Boardman and
Hong{-}Zhe Su and
Junwen Wang},
title = {MetaMarker: a pipeline for de novo discovery of novel metagenomic
biomarkers},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3812--3814},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz123},
doi = {10.1093/BIOINFORMATICS/BTZ123},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Koohi-MoghadamB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KopanosTKCAMM19,
author = {Christos Kopanos and
Vasilis Tsiolkas and
Alexandros Kouris and
Charles E. Chapple and
Monica Albarca Aguilera and
Richard Meyer and
Andreas Massouras},
title = {VarSome: the human genomic variant search engine},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1978--1980},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty897},
doi = {10.1093/BIOINFORMATICS/BTY897},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KopanosTKCAMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KortJ19,
author = {Eric J. Kort and
Stefan Jovinge},
title = {Streamlined analysis of {LINCS} {L1000} data with the slinky package
for {R}},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3176--3177},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz002},
doi = {10.1093/BIOINFORMATICS/BTZ002},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KortJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterBL19,
author = {Johannes K{\"{o}}ster and
Myles Brown and
Xiaole Shirley Liu},
title = {A Bayesian model for single cell transcript expression analysis on
{MERFISH} data},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {995--1001},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty718},
doi = {10.1093/BIOINFORMATICS/BTY718},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosterBL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterBL19a,
author = {Johannes K{\"{o}}ster and
Myles Brown and
Xiaole Shirley Liu},
title = {A Bayesian model for single cell transcript expression analysis on
{MERFISH} data},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2347},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty857},
doi = {10.1093/BIOINFORMATICS/BTY857},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosterBL19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KouchakiYWWWPCC19,
author = {Samaneh Kouchaki and
Yang Yang and
Timothy M. Walker and
A. Sarah Walker and
Daniel J. Wilson and
Timothy E. A Peto and
Derrick W. Crook and
CRyPTIC Consortium and
David A. Clifton},
title = {Application of machine learning techniques to tuberculosis drug resistance
analysis},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2276--2282},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty949},
doi = {10.1093/BIOINFORMATICS/BTY949},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KouchakiYWWWPCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KowalczykMPMCC19,
author = {Amanda Kowalczyk and
Wynn K. Meyer and
Raghavendran Partha and
Weiguang Mao and
Nathan L. Clark and
Maria Chikina},
title = {RERconverge: an {R} package for associating evolutionary rates with
convergent traits},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4815--4817},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz468},
doi = {10.1093/BIOINFORMATICS/BTZ468},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KowalczykMPMCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KowielBPSJM19,
author = {Marcin Kowiel and
Dariusz Brzezinski and
Przemyslaw J. Porebski and
Ivan G. Shabalin and
Mariusz Jaskolski and
Wladek Minor},
title = {Automatic recognition of ligands in electron density by machine learning},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {452--461},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty626},
doi = {10.1093/BIOINFORMATICS/BTY626},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KowielBPSJM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KozlovDFMS19,
author = {Alexey M. Kozlov and
Diego Darriba and
Tom{\'{a}}s Flouri and
Benoit Morel and
Alexandros Stamatakis},
title = {RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood
phylogenetic inference},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4453--4455},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz305},
doi = {10.1093/BIOINFORMATICS/BTZ305},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KozlovDFMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KozusznikBKKMST19,
author = {Jan Kozuszn{\'{\i}}k and
Petr Bainar and
Jana Kl{\'{\i}}mov{\'{a}} and
Michal Krumnikl and
Pavel Moravec and
V{\'{a}}clav Svaton and
Pavel Tomanc{\'{a}}k},
title = {{SPIM} workflow manager for {HPC}},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3875--3876},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz140},
doi = {10.1093/BIOINFORMATICS/BTZ140},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KozusznikBKKMST19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KryukovTNI19,
author = {Kirill Kryukov and
Mahoko Ueda Takahashi and
So Nakagawa and
Tadashi Imanishi},
title = {Nucleotide Archival Format {(NAF)} enables efficient lossless reference-free
compression of {DNA} sequences},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3826--3828},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz144},
doi = {10.1093/BIOINFORMATICS/BTZ144},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KryukovTNI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuangWLY19,
author = {Zheng Kuang and
Ying Wang and
Lei Li and
Xiaozeng Yang},
title = {miRDeep-P2: accurate and fast analysis of the microRNA transcriptome
in plants},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2521--2522},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty972},
doi = {10.1093/BIOINFORMATICS/BTY972},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuangWLY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kucherov19,
author = {Gregory Kucherov},
title = {Evolution of biosequence search algorithms: a brief survey},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3547--3552},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz272},
doi = {10.1093/BIOINFORMATICS/BTZ272},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kucherov19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuksaAKVWL19,
author = {Pavel P. Kuksa and
Alexandre Amlie{-}Wolf and
Zivadin Katanic and
Otto Valladares and
Li{-}San Wang and
Yuk Yee Leung},
title = {{DASHR} 2.0: integrated database of human small non-coding {RNA} genes
and mature products},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1033--1039},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty709},
doi = {10.1093/BIOINFORMATICS/BTY709},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuksaAKVWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumariKK19,
author = {Bandana Kumari and
Ravindra Kumar and
Manish Kumar},
title = {Identifying residues that determine palmitoylation using association
rule mining},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2887--2890},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz003},
doi = {10.1093/BIOINFORMATICS/BTZ003},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumariKK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunduB19,
author = {Soumya Kundu and
Mukul S. Bansal},
title = {SaGePhy: an improved phylogenetic simulation framework for gene and
subgene evolution},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3496--3498},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz081},
doi = {10.1093/BIOINFORMATICS/BTZ081},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KunduB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunoMT19,
author = {Akihiro Kuno and
Seiya Mizuno and
Satoru Takahashi},
title = {KOnezumi: a web application for automating gene disruption strategies
to generate knockout mice},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3479--3481},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz090},
doi = {10.1093/BIOINFORMATICS/BTZ090},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KunoMT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunyavskayaP19,
author = {Olga Kunyavskaya and
Andrey D. Prjibelski},
title = {{SGTK:} a toolkit for visualization and assessment of scaffold graphs},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2303--2305},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty956},
doi = {10.1093/BIOINFORMATICS/BTY956},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KunyavskayaP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KurcinskiCOKBKK19,
author = {Mateusz Kurcinski and
Maciej Pawel Ciemny and
Tymoteusz Oleniecki and
Aleksander Kuriata and
Aleksandra E. Badaczewska{-}Dawid and
Andrzej Kolinski and
Sebastian Kmiecik},
title = {CABS-dock standalone: a toolbox for flexible protein-peptide docking},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4170--4172},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz185},
doi = {10.1093/BIOINFORMATICS/BTZ185},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KurcinskiCOKBKK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KurcinskiOCKKK19,
author = {Mateusz Kurcinski and
Tymoteusz Oleniecki and
Maciej Pawel Ciemny and
Aleksander Kuriata and
Andrzej Kolinski and
Sebastian Kmiecik},
title = {CABS-flex standalone: a simulation environment for fast modeling of
protein flexibility},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {694--695},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty685},
doi = {10.1093/BIOINFORMATICS/BTY685},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KurcinskiOCKKK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuriataIKVK19,
author = {Aleksander Kuriata and
Valentin Iglesias and
Mateusz Kurcinski and
Salvador Ventura and
Sebastian Kmiecik},
title = {Aggrescan3D standalone package for structure-based prediction of protein
aggregation properties},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3834--3835},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz143},
doi = {10.1093/BIOINFORMATICS/BTZ143},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuriataIKVK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KyritsisWSLM19,
author = {Konstantinos A Kyritsis and
Bing Wang and
Julie M. Sullivan and
Rachel Lyne and
Gos Micklem},
title = {InterMineR: an {R} package for InterMine databases},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3206--3207},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz039},
doi = {10.1093/BIOINFORMATICS/BTZ039},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KyritsisWSLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LabelleML19,
author = {Caroline Labelle and
Anne Marinier and
S{\'{e}}bastien Lemieux},
title = {Enhancing the drug discovery process: Bayesian inference for the analysis
and comparison of dose-response experiments},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i464--i473},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz335},
doi = {10.1093/BIOINFORMATICS/BTZ335},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LabelleML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lacroix19,
author = {Laurent Lacroix},
title = {G4HunterApps},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2311--2312},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty951},
doi = {10.1093/BIOINFORMATICS/BTY951},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lacroix19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LafitaTBB19,
author = {Aleix Lafita and
Pengfei Tian and
Robert B. Best and
Alex Bateman},
title = {{TADOSS:} computational estimation of tandem domain swap stability},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2507--2508},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty974},
doi = {10.1093/BIOINFORMATICS/BTY974},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LafitaTBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LanfearSKWS19,
author = {Robert Lanfear and
Miriam Schalamun and
David Kainer and
Weiwen Wang and
Benjamin Schwessinger},
title = {MinIONQC: fast and simple quality control for MinION sequencing data},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {523--525},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty654},
doi = {10.1093/BIOINFORMATICS/BTY654},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LanfearSKWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangmeadWAC19,
author = {Ben Langmead and
Christopher Wilks and
Valentin Antonescu and
Rone Charles},
title = {Scaling read aligners to hundreds of threads on general-purpose processors},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {421--432},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty648},
doi = {10.1093/BIOINFORMATICS/BTY648},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LangmeadWAC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LannoyRR19,
author = {Carlos de Lannoy and
Judith Risse and
Dick de Ridder},
title = {poreTally: run and publish de novo nanopore assembler benchmarks},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2663--2664},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1045},
doi = {10.1093/BIOINFORMATICS/BTY1045},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LannoyRR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaperleHRMBBBRN19,
author = {Jonathan Laperle and
Simon H{\'{e}}bert{-}Deschamps and
Joanny Raby and
David A. de Lima Morais and
Michel Barrette and
David Bujold and
Charlotte Bastin and
Marc{-}Antoine Robert and
Jean{-}Fran{\c{c}}ois Nadeau and
Marie Harel and
Alexei Nordell Markovits and
Alain Veilleux and
Guillaume Bourque and
Pierre{-}{\'{E}}tienne Jacques},
title = {The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison
of user datasets with thousands of public epigenomic datasets},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {674--676},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty655},
doi = {10.1093/BIOINFORMATICS/BTY655},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaperleHRMBBBRN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LapidothPPF19,
author = {Gideon Lapidoth and
Jake Parker and
Jaime Prilusky and
Sarel Jacob Fleishman},
title = {AbPredict 2: a server for accurate and unstrained structure prediction
of antibody variable domains},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1591--1593},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty822},
doi = {10.1093/BIOINFORMATICS/BTY822},
timestamp = {Thu, 15 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LapidothPPF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarsonACBDELH19,
author = {David E. Larson and
Haley J. Abel and
Colby Chiang and
Abhijit Badve and
Indraniel Das and
James M. Eldred and
Ryan M. Layer and
Ira M. Hall},
title = {svtools: population-scale analysis of structural variation},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4782--4787},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz492},
doi = {10.1093/BIOINFORMATICS/BTZ492},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LarsonACBDELH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LauAMP19,
author = {Andy M. C. Lau and
Zainab Ahdash and
Chloe Martens and
Argyris Politis},
title = {Deuteros: software for rapid analysis and visualization of data from
differential hydrogen deuterium exchange-mass spectrometry},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3171--3173},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz022},
doi = {10.1093/BIOINFORMATICS/BTZ022},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LauAMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeUMM19,
author = {Trang T. Le and
Ryan J. Urbanowicz and
Jason H. Moore and
Brett A. McKinney},
title = {STatistical Inference Relief {(STIR)} feature selection},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1358--1365},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty788},
doi = {10.1093/BIOINFORMATICS/BTY788},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeUMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LealDJSMKSHS19,
author = {Luis G. Leal and
Alessia David and
Marjo{-}Riitta J{\"{a}}rvelin and
Sylvain Sebert and
Minna M{\"{a}}nnikk{\"{o}} and
Ville Karhunen and
Eleanor Seaby and
Clive J. Hoggart and
Michael J. E. Sternberg},
title = {Identification of disease-associated loci using machine learning for
genotype and network data integration},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5182--5190},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz310},
doi = {10.1093/BIOINFORMATICS/BTZ310},
timestamp = {Sat, 09 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LealDJSMKSHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lee19,
author = {Benjamin D. Lee},
title = {Squiggle: a user-friendly two-dimensional {DNA} sequence visualization
tool},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1425--1426},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty807},
doi = {10.1093/BIOINFORMATICS/BTY807},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lee19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lee19a,
author = {Michael D. Lee},
title = {GToTree: a user-friendly workflow for phylogenomics},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4162--4164},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz188},
doi = {10.1093/BIOINFORMATICS/BTZ188},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lee19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeHS19,
author = {Minhyeok Lee and
Sung Won Han and
Junhee Seok},
title = {Prediction of survival risks with adjusted gene expression through
risk-gene networks},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4898--4906},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz399},
doi = {10.1093/BIOINFORMATICS/BTZ399},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeJVKAP19,
author = {Soohyun Lee and
Jeremy Johnson and
Carl Vitzthum and
Koray Kirli and
Burak Han Alver and
Peter J. Park},
title = {Tibanna: software for scalable execution of portable pipelines on
the cloud},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4424--4426},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz379},
doi = {10.1093/BIOINFORMATICS/BTZ379},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeJVKAP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeLK19,
author = {Do{-}Hoon Lee and
Sangseon Lee and
Sun Kim},
title = {{PRISM:} methylation pattern-based, reference-free inference of subclonal
makeup},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i520--i529},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz327},
doi = {10.1093/BIOINFORMATICS/BTZ327},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeLK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LefortLCTPQPIVS19,
author = {Ga{\"{e}}lle Lefort and
Laurence Liaubet and
C{\'{e}}cile Canlet and
Patrick Tardivel and
Marie{-}Christine P{\`{e}}re and
H{\'{e}}l{\`{e}}ne Quesnel and
Alain Paris and
Nathalie Iannuccelli and
Nathalie Vialaneix and
R{\'{e}}mi Servien},
title = {{ASICS:} an {R} package for a whole analysis workflow of 1D 1H {NMR}
spectra},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4356--4363},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz248},
doi = {10.1093/BIOINFORMATICS/BTZ248},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LefortLCTPQPIVS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeimeisterDM19,
author = {Chris{-}Andr{\'{e}} Leimeister and
Thomas Dencker and
Burkhard Morgenstern},
title = {Accurate multiple alignment of distantly related genome sequences
using filtered spaced word matches as anchor points},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {211--218},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty592},
doi = {10.1093/BIOINFORMATICS/BTY592},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeimeisterDM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LenaSPN19,
author = {Pietro Di Lena and
Claudia Sala and
Andrea Prodi and
Christine Nardini},
title = {Missing value estimation methods for {DNA} methylation data},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3786--3793},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz134},
doi = {10.1093/BIOINFORMATICS/BTZ134},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LenaSPN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LetortMSHBMZC19,
author = {Ga{\"{e}}lle Letort and
Arnau Montagud and
Gautier Stoll and
Randy W. Heiland and
Emmanuel Barillot and
Paul Macklin and
Andrei Yu. Zinovyev and
Laurence Calzone},
title = {PhysiBoSS: a multi-scale agent-based modelling framework integrating
physical dimension and cell signalling},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1188--1196},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty766},
doi = {10.1093/BIOINFORMATICS/BTY766},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LetortMSHBMZC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeungVCLKCQGSSW19,
author = {Yuk Yee Leung and
Otto Valladares and
Yi{-}Fan Chou and
Han{-}Jen Lin and
Amanda Kuzma and
Laura Cantwell and
Liming Qu and
Prabhakaran Gangadharan and
William J. Salerno and
Gerard D. Schellenberg and
Li{-}San Wang},
title = {{VCPA:} genomic variant calling pipeline and data management tool
for Alzheimer's Disease Sequencing Project},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1985},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz216},
doi = {10.1093/BIOINFORMATICS/BTZ216},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeungVCLKCQGSSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeungVCLKCQSSW19,
author = {Yuk Yee Leung and
Otto Valladares and
Yi{-}Fan Chou and
Han{-}Jen Lin and
Amanda Kuzma and
Laura Cantwell and
Liming Qu and
William J. Salerno and
Gerard D. Schellenberg and
Li{-}San Wang},
title = {{VCPA:} genomic variant calling pipeline and data management tool
for Alzheimer's Disease Sequencing Project},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1768--1770},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty894},
doi = {10.1093/BIOINFORMATICS/BTY894},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeungVCLKCQSSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeuschnerSFLBM19,
author = {Johannes Leuschner and
Maximilian Schmidt and
Pascal Fernsel and
Delf Lachmund and
Tobias Boskamp and
Peter Maass},
title = {Supervised non-negative matrix factorization methods for {MALDI} imaging
applications},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1940--1947},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty909},
doi = {10.1093/BIOINFORMATICS/BTY909},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeuschnerSFLBM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LevyTSC19,
author = {Joshua J. Levy and
Alexander J. Titus and
Lucas A. Salas and
Brock C. Christensen},
title = {PyMethylProcess - convenient high-throughput preprocessing workflow
for {DNA} methylation data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5379--5381},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz594},
doi = {10.1093/BIOINFORMATICS/BTZ594},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LevyTSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LewisSL19,
author = {Tony E. Lewis and
Ian Sillitoe and
Jonathan G. Lees},
title = {cath-resolve-hits: a new tool that resolves domain matches suspiciously
quickly},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1766--1767},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty863},
doi = {10.1093/BIOINFORMATICS/BTY863},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LewisSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li19,
author = {Heng Li},
title = {Identifying centromeric satellites with dna-brnn},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4408--4410},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz264},
doi = {10.1093/BIOINFORMATICS/BTZ264},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiBSBG19,
author = {Hong{-}Dong Li and
Tianjian Bai and
Erin Sandford and
Margit Burmeister and
Yuanfang Guan},
title = {BaiHui: cross-species brain-specific network built with hundreds of
hand-curated datasets},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2486--2488},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1001},
doi = {10.1093/BIOINFORMATICS/BTY1001},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiBSBG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHNG19,
author = {Hongyang Li and
Shuai Hu and
Nouri Neamati and
Yuanfang Guan},
title = {{TAIJI:} approaching experimental replicates-level accuracy for drug
synergy prediction},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2338--2339},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty955},
doi = {10.1093/BIOINFORMATICS/BTY955},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHNG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHZYZ19,
author = {Yang Li and
Jun Hu and
Chengxin Zhang and
Dong{-}Jun Yu and
Yang Zhang},
title = {ResPRE: high-accuracy protein contact prediction by coupling precision
matrix with deep residual neural networks},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4647--4655},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz291},
doi = {10.1093/BIOINFORMATICS/BTZ291},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHZYZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJMKXCLCLS19,
author = {Miao{-}Xin Li and
Lin Jiang and
Timothy Shin Heng Mak and
Johnny S. H. Kwan and
Chao Xue and
Peikai Chen and
Henry Chi{-}Ming Leung and
Liqian Cui and
Tao Li and
Pak Chung Sham},
title = {A powerful conditional gene-based association approach implicated
functionally important genes for schizophrenia},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {628--635},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty682},
doi = {10.1093/BIOINFORMATICS/BTY682},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJMKXCLCLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJS19,
author = {Pengyuan Li and
Xiangying Jiang and
Hagit Shatkay},
title = {Figure and caption extraction from biomedical documents},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4381--4388},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz228},
doi = {10.1093/BIOINFORMATICS/BTZ228},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJV19,
author = {Yuezhe Li and
Tiffany Jann and
Paola Vera{-}Licona},
title = {Benchmarking time-series data discretization on inference methods},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3102--3109},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz036},
doi = {10.1093/BIOINFORMATICS/BTZ036},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiL19,
author = {Jun Li and
Alicia T. Lamere},
title = {DiPhiSeq: robust comparison of expression levels on RNA-Seq data with
large sample sizes},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2235--2242},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty952},
doi = {10.1093/BIOINFORMATICS/BTY952},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiL19a,
author = {Wei Vivian Li and
Jingyi Jessica Li},
title = {A statistical simulator scDesign for rational scRNA-seq experimental
design},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i41--i50},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz321},
doi = {10.1093/BIOINFORMATICS/BTZ321},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiL19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLC19,
author = {Quan Li and
Ray Luo and
Hai{-}Feng Chen},
title = {Dynamical important residue network {(DIRN):} network inference via
conformational change},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4664--4670},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz298},
doi = {10.1093/BIOINFORMATICS/BTZ298},
timestamp = {Mon, 24 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLCZH19,
author = {Chuang Li and
Kenli Li and
Tao Chen and
Yunping Zhu and
Qiang He},
title = {SW-Tandem: a highly efficient tool for large-scale peptide identification
with parallel spectrum dot product on Sunway TaihuLight},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3861--3863},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz147},
doi = {10.1093/BIOINFORMATICS/BTZ147},
timestamp = {Sat, 11 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLCZH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLLFXWTZZWLCJZ19,
author = {Zhaojun Li and
Xutong Li and
Xiaohong Liu and
Zunyun Fu and
Zhaoping Xiong and
Xiaolong Wu and
Xiaoqin Tan and
Jihui Zhao and
Feisheng Zhong and
Xiaozhe Wan and
Xiaomin Luo and
Kaixian Chen and
Hualiang Jiang and
Mingyue Zheng},
title = {KinomeX: a web application for predicting kinome-wide polypharmacology
effect of small molecules},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5354--5356},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz519},
doi = {10.1093/BIOINFORMATICS/BTZ519},
timestamp = {Thu, 28 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLLFXWTZZWLCJZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiNZLS19,
author = {Yang Li and
Pengyu Ni and
Shaoqiang Zhang and
Guojun Li and
Zhengchang Su},
title = {ProSampler: an ultrafast and accurate motif finder in large ChIP-seq
datasets for combinatory motif discovery},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4632--4639},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz290},
doi = {10.1093/BIOINFORMATICS/BTZ290},
timestamp = {Wed, 16 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiNZLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiPSLLWLB19,
author = {Hongjian Li and
Jiangjun Peng and
Pavel Sidorov and
Yee Leung and
Kwong{-}Sak Leung and
Man Hon Wong and
Gang Lu and
Pedro J. Ballester},
title = {Classical scoring functions for docking are unable to exploit large
volumes of structural and interaction data},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3989--3995},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz183},
doi = {10.1093/BIOINFORMATICS/BTZ183},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiPSLLWLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiSHL19,
author = {Xin Li and
Samaneh Saadat and
Haiyan Hu and
Xiaoman Li},
title = {BHap: a novel approach for bacterial haplotype reconstruction},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4624--4631},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz280},
doi = {10.1093/BIOINFORMATICS/BTZ280},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiSHL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiTSKZL19,
author = {Jianrong Li and
Chun{-}Yip Tong and
Tsai{-}Jung Sung and
Ting{-}Yu Kang and
Xianghong Jasmine Zhou and
Chun{-}Chi Liu},
title = {{CMEP:} a database for circulating microRNA expression profiling},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3127--3132},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz042},
doi = {10.1093/BIOINFORMATICS/BTZ042},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiTSKZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiTWPW19,
author = {Min Li and
Li Tang and
Fang{-}Xiang Wu and
Yi Pan and
Jianxin Wang},
title = {{SCOP:} a novel scaffolding algorithm based on contig classification
and optimization},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1142--1150},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty773},
doi = {10.1093/BIOINFORMATICS/BTY773},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiTWPW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiVZRW19,
author = {Kai Li and
Marc Vaudel and
Bing Zhang and
Yan Ren and
Bo Wen},
title = {{PDV:} an integrative proteomics data viewer},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1249--1251},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty770},
doi = {10.1093/BIOINFORMATICS/BTY770},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiVZRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWJW19,
author = {Ziyi Li and
Zhijin Wu and
Peng Jin and
Hao Wu},
title = {Dissecting differential signals in high-throughput data from complex
tissues},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3898--3905},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz196},
doi = {10.1093/BIOINFORMATICS/BTZ196},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWJW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiZW19,
author = {Xiangtao Li and
Shixiong Zhang and
Ka{-}Chun Wong},
title = {Single-cell RNA-seq interpretations using evolutionary multiobjective
ensemble pruning},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2809--2817},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1056},
doi = {10.1093/BIOINFORMATICS/BTY1056},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiZW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiZWQWLYQWZT19,
author = {Zixiu Li and
Feng Zhang and
Yukai Wang and
Yue Qiu and
Yang Wu and
Yulan Lu and
Lin Yang and
William J. Qu and
Huijun Wang and
Wenhao Zhou and
Weidong Tian},
title = {PhenoPro: a novel toolkit for assisting in the diagnosis of Mendelian
disease},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3559--3566},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz100},
doi = {10.1093/BIOINFORMATICS/BTZ100},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiZWQWLYQWZT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoHTH19,
author = {Ki{-}Hok Liao and
Wing{-}Kai Hon and
Chuan Yi Tang and
Wen{-}Ping Hsieh},
title = {MetaSMC: a coalescent-based shotgun sequence simulator for evolving
microbial populations},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1677--1685},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty840},
doi = {10.1093/BIOINFORMATICS/BTY840},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoHTH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LibinDAT19,
author = {Pieter J. K. Libin and
Koen Deforche and
Ana B. Abecasis and
Kristof Theys},
title = {{VIRULIGN:} fast codon-correct alignment and annotation of viral genomes},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1763--1765},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty851},
doi = {10.1093/BIOINFORMATICS/BTY851},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LibinDAT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimaSDSCKABCC19,
author = {Diogo B. Lima and
Andr{\'{e}} Ramos Fernandes Da Silva and
Mathieu Dupr{\'{e}} and
Marlon D. M. Santos and
Milan A. Clasen and
Louise U. Kurt and
Priscila F. Aquino and
Valmir C. Barbosa and
Paulo C. Carvalho and
Julia Chamot{-}Rooke},
title = {Top-Down Garbage Collector: a tool for selecting high-quality top-down
proteomics mass spectra},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3489--3490},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz085},
doi = {10.1093/BIOINFORMATICS/BTZ085},
timestamp = {Mon, 25 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LimaSDSCKABCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinB19,
author = {Chieh Lin and
Ziv Bar{-}Joseph},
title = {Continuous-state HMMs for modeling time-series single-cell RNA-Seq
data},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4707--4715},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz296},
doi = {10.1093/BIOINFORMATICS/BTZ296},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinK19,
author = {Kuan{-}Ting Lin and
Adrian R. Krainer},
title = {PSI-Sigma: a comprehensive splicing-detection method for short-read
and long-read RNA-seq analysis},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5048--5054},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz438},
doi = {10.1093/BIOINFORMATICS/BTZ438},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinKLWNWGL19,
author = {Chih{-}Hsu Lin and
Daniel M. Konecki and
Meng Liu and
Stephen J. Wilson and
Huda Nassar and
Angela D. Wilkins and
David F. Gleich and
Olivier Lichtarge},
title = {Multimodal network diffusion predicts future disease-gene-chemical
associations},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1536--1543},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty858},
doi = {10.1093/BIOINFORMATICS/BTY858},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinKLWNWGL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinZKX19,
author = {Ruogu Lin and
Xiangrui Zeng and
Kris Kitani and
Min Xu},
title = {Adversarial domain adaptation for cross data source macromolecule
in situ structural classification in cellular electron cryo-tomograms},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i260--i268},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz364},
doi = {10.1093/BIOINFORMATICS/BTZ364},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinZKX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinardSP19,
author = {Benjamin Linard and
Krister M. Swenson and
Fabio Pardi},
title = {Rapid alignment-free phylogenetic identification of metagenomic sequences},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3303--3312},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz068},
doi = {10.1093/BIOINFORMATICS/BTZ068},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinardSP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinkerHPAKVWG19,
author = {Sara B. Linker and
Jonathan Y. Hsu and
Adela Pfaff and
Debha Amatya and
Shu{-}Meng Ko and
Sarah Voter and
Quinn Wong and
Fred H. Gage},
title = {BrainImageR: spatiotemporal gene set analysis referencing the human
brain},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {343--345},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty618},
doi = {10.1093/BIOINFORMATICS/BTY618},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinkerHPAKVWG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LippmannUL19,
author = {Catharina Lippmann and
Alfred Ultsch and
J{\"{o}}rn L{\"{o}}tsch},
title = {Computational functional genomics-based reduction of disease-related
gene sets to their key components},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2362--2370},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty986},
doi = {10.1093/BIOINFORMATICS/BTY986},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LippmannUL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ListAKS19,
author = {Markus List and
Azim Dehghani Amirabad and
Dennis Kostka and
Marcel H. Schulz},
title = {Large-scale inference of competing endogenous {RNA} networks with
sparse partial correlation},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i596--i604},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz314},
doi = {10.1093/BIOINFORMATICS/BTZ314},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ListAKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuDKTMS19,
author = {Lihua Liu and
David R. Damerell and
Leonidas Koukouflis and
Yufeng Tong and
Brian D. Marsden and
Matthieu Schapira},
title = {UbiHub: a data hub for the explorers of ubiquitination pathways},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2882--2884},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1067},
doi = {10.1093/BIOINFORMATICS/BTY1067},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuDKTMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHZCZGYZLYHY19,
author = {Xian Liu and
Mingfei Han and
Chen Zhao and
Cheng Chang and
Yunping Zhu and
Changhui Ge and
Ronghua Yin and
Yiqun Zhan and
Changyan Li and
Miao Yu and
Fuchu He and
Xiaoming Yang},
title = {KeggExp: a web server for visual integration of {KEGG} pathways and
expression profile data},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1430--1432},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty798},
doi = {10.1093/BIOINFORMATICS/BTY798},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHZCZGYZLYHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLHW19,
author = {Chengyu Liu and
Yu{-}Chen Liu and
Hsien{-}Da Huang and
Wei Wang},
title = {Biogenesis mechanisms of circular {RNA} can be categorized through
feature extraction of a machine learning model},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4867--4870},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz705},
doi = {10.1093/BIOINFORMATICS/BTZ705},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLJ19,
author = {Qiao Liu and
Hairong Lv and
Rui Jiang},
title = {hicGAN infers super resolution Hi-C data with generative adversarial
networks},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i99--i107},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz317},
doi = {10.1093/BIOINFORMATICS/BTZ317},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLRL19,
author = {Juntao Liu and
Xiangyu Liu and
Xianwen Ren and
Guojun Li},
title = {scRNAss: a single-cell RNA-seq assembler via imputing dropouts and
combing junctions},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4264--4271},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz240},
doi = {10.1093/BIOINFORMATICS/BTZ240},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLRL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLW19,
author = {Yongzhuang Liu and
Jian Liu and
Yadong Wang},
title = {Joint detection of germline and somatic copy number events in matched
tumor-normal sample pairs},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4955--4961},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz429},
doi = {10.1093/BIOINFORMATICS/BTZ429},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuRLZYDGCDWUZF19,
author = {Zhaowen Liu and
Edmund T. Rolls and
Zhi Liu and
Kai Zhang and
Ming Yang and
Jingnan Du and
Weikang Gong and
Wei Cheng and
Fei Dai and
He Wang and
K{\^{a}}mil Ugurbil and
Jie Zhang and
Jianfeng Feng},
title = {Brain annotation toolbox: exploring the functional and genetic associations
of neuroimaging results},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3771--3778},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz128},
doi = {10.1093/BIOINFORMATICS/BTZ128},
timestamp = {Mon, 22 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuRLZYDGCDWUZF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSLEG19,
author = {Yating Liu and
Luke Sargent and
Wilson Leung and
Sarah C. R. Elgin and
Jeremy Goecks},
title = {G-OnRamp: a Galaxy-based platform for collaborative annotation of
eukaryotic genomes},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4422--4423},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz309},
doi = {10.1093/BIOINFORMATICS/BTZ309},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSLEG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSPRLCS19,
author = {Qi Liu and
Quanhu Sheng and
Jie Ping and
Marisol Adelina Ramirez and
Ken S. Lau and
Robert J. Coffey and
Yu Shyr},
title = {scRNABatchQC: multi-samples quality control for single cell RNA-seq
data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5306--5308},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz601},
doi = {10.1093/BIOINFORMATICS/BTZ601},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSPRLCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuW19,
author = {Tong Liu and
Zheng Wang},
title = {HiCNN: a very deep convolutional neural network to better enhance
the resolution of Hi-C data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4222--4228},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz251},
doi = {10.1093/BIOINFORMATICS/BTZ251},
timestamp = {Tue, 07 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYDL19,
author = {Yuansheng Liu and
Zu{-}Guo Yu and
Marcel E. Dinger and
Jinyan Li},
title = {Index suffix-prefix overlaps by (w, k)-minimizer to generate long
contigs for reads compression},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2066--2074},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty936},
doi = {10.1093/BIOINFORMATICS/BTY936},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYDL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYWLKJY19,
author = {Bowen Liu and
Xiaofei Yang and
Tingjie Wang and
Jiadong Lin and
Yongyong Kang and
Peng Jia and
Kai Ye},
title = {MEpurity: estimating tumor purity using {DNA} methylation data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5298--5300},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz555},
doi = {10.1093/BIOINFORMATICS/BTZ555},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYWLKJY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZL19,
author = {Yuansheng Liu and
Leo Yu Zhang and
Jinyan Li},
title = {Fast detection of maximal exact matches via fixed sampling of query
K-mers and Bloom filtering of index K-mers},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4560--4567},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz273},
doi = {10.1093/BIOINFORMATICS/BTZ273},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Llinares-LopezP19,
author = {Felipe Llinares{-}L{\'{o}}pez and
Laetitia Papaxanthos and
Damian Roqueiro and
Dean A. Bodenham and
Karsten M. Borgwardt},
title = {{CASMAP:} detection of statistically significant combinations of SNPs
in association mapping},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2680--2682},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1020},
doi = {10.1093/BIOINFORMATICS/BTY1020},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Llinares-LopezP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoLMKJBZJA19,
author = {Yu{-}Chen Lo and
Tianyun Liu and
Kari M. Morrissey and
Satoko Kakiuchi{-}Kiyota and
Adam R. Johnson and
Fabio Broccatelli and
Yu Zhong and
Amita Joshi and
Russ B. Altman},
title = {Computational analysis of kinase inhibitor selectivity using structural
knowledge},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {235--242},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty582},
doi = {10.1093/BIOINFORMATICS/BTY582},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoLMKJBZJA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LocalloPFD19,
author = {Alessio Locallo and
Davide Prandi and
Tarcisio Fedrizzi and
Francesca Demichelis},
title = {{TPES:} tumor purity estimation from SNVs},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4433--4435},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz406},
doi = {10.1093/BIOINFORMATICS/BTZ406},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LocalloPFD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Locard-PauletPA19,
author = {Marie Locard{-}Paulet and
Julien Parra and
Renaud Albigot and
Emmanuelle Mouton{-}Barbosa and
Laurent Bardi and
Odile Burlet{-}Schiltz and
Julien Marcoux},
title = {VisioProt-MS: interactive 2D maps from intact protein mass spectrometry},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {679--681},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty680},
doi = {10.1093/BIOINFORMATICS/BTY680},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Locard-PauletPA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-BlancoC19,
author = {Jos{\'{e}} Ram{\'{o}}n L{\'{o}}pez{-}Blanco and
Pablo Chac{\'{o}}n},
title = {{KORP:} knowledge-based 6D potential for fast protein and loop modeling},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3013--3019},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz026},
doi = {10.1093/BIOINFORMATICS/BTZ026},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-BlancoC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-IbanezMCP19,
author = {Javier L{\'{o}}pez{-}Ib{\'{a}}{\~{n}}ez and
Laura T. Mart{\'{\i}}n and
Monica Chagoyen and
Florencio Pazos},
title = {Bacterial Feature Finder (BaFF) - a system for extracting features
overrepresented in sets of prokaryotic organisms},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3482--3483},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz099},
doi = {10.1093/BIOINFORMATICS/BTZ099},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-IbanezMCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopezCKBFZAGSP19,
author = {Fr{\'{e}}d{\'{e}}ric Lopez and
Guillaume Charbonnier and
Yasmina Kermezli and
Mohamed Belhocine and
Quentin Ferr{\'{e}} and
N. Zweig and
Mourad Aribi and
Aitor Gonz{\'{a}}lez and
Salvatore Spicuglia and
Denis Puthier},
title = {Explore, edit and leverage genomic annotations using Python {GTF}
toolkit},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3487--3488},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz116},
doi = {10.1093/BIOINFORMATICS/BTZ116},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LopezCKBFZAGSP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuLMBASMVR19,
author = {Hengyang Lu and
Jiabing Li and
Melisa A. Martinez{-}Paniagua and
Irfan N. Bandey and
Amit Amritkar and
Harjeet Singh and
David Mayerich and
Navin Varadarajan and
Badrinath Roysam},
title = {{TIMING} 2.0: high-throughput single-cell profiling of dynamic cell-cell
interactions by time-lapse imaging microscopy in nanowell grids},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {706--708},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty676},
doi = {10.1093/BIOINFORMATICS/BTY676},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuLMBASMVR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuQLMP19,
author = {Xinguo Lu and
Xin Qian and
Xing Li and
Qiumai Miao and
Shaoliang Peng},
title = {{DMCM:} a Data-adaptive Mutation Clustering Method to identify cancer-related
mutation clusters},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {389--397},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty624},
doi = {10.1093/BIOINFORMATICS/BTY624},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuQLMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuTGD19,
author = {Darlene Lu and
Yorghos Tripodis and
Louis C. Gerstenfeld and
Serkalem Demissie},
title = {Clustering of temporal gene expression data with mixtures of mixed
effects models with a penalized likelihood},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {778--786},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty696},
doi = {10.1093/BIOINFORMATICS/BTY696},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuTGD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuZHM19,
author = {Alex X. Lu and
Taraneh Zarin and
Ian Shenyen Hsu and
Alan M. Moses},
title = {YeastSpotter: accurate and parameter-free web segmentation for microscopy
images of yeast cells},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4525--4527},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz402},
doi = {10.1093/BIOINFORMATICS/BTZ402},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuZHM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LubitzL19,
author = {Timo Lubitz and
Wolfram Liebermeister},
title = {Parameter balancing: consistent parameter sets for kinetic metabolic
models},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3857--3858},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz129},
doi = {10.1093/BIOINFORMATICS/BTZ129},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LubitzL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LudwiczakWSAD19,
author = {Jan Ludwiczak and
Aleksander Winski and
Krzysztof Szczepaniak and
Vikram Alva and
Stanislaw Dunin{-}Horkawicz},
title = {DeepCoil - a fast and accurate prediction of coiled-coil domains in
protein sequences},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2790--2795},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1062},
doi = {10.1093/BIOINFORMATICS/BTY1062},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LudwiczakWSAD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lunter19,
author = {Gerton Lunter},
title = {Haplotype matching in large cohorts using the Li and Stephens model},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {798--806},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty735},
doi = {10.1093/BIOINFORMATICS/BTY735},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lunter19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoLTW19,
author = {Ping Luo and
Yuanyuan Li and
Li{-}Ping Tian and
Fang{-}Xiang Wu},
title = {Enhancing the prediction of disease-gene associations with multimodal
deep learning},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3735--3742},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz155},
doi = {10.1093/BIOINFORMATICS/BTZ155},
timestamp = {Thu, 01 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoLTW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoMYWAAIS19,
author = {Yuan Luo and
Chengsheng Mao and
Yiben Yang and
Fei Wang and
Faraz S. Ahmad and
Donna Arnett and
Marguerite R. Irvin and
Sanjiv J. Shah},
title = {Integrating hypertension phenotype and genotype with hybrid non-negative
matrix factorization},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1395--1403},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty804},
doi = {10.1093/BIOINFORMATICS/BTY804},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoMYWAAIS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoMYWAAIS19a,
author = {Yuan Luo and
Chengsheng Mao and
Yiben Yang and
Fei Wang and
Faraz S. Ahmad and
Donna Arnett and
Marguerite R. Irvin and
Sanjiv J. Shah},
title = {Integrating hypertension phenotype and genotype with hybrid non-negative
matrix factorization},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2885},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz049},
doi = {10.1093/BIOINFORMATICS/BTZ049},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoMYWAAIS19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoWLZL19,
author = {Fenglin Luo and
Minghui Wang and
Yu Liu and
Xing{-}Ming Zhao and
Ao Li},
title = {DeepPhos: prediction of protein phosphorylation sites with deep learning},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2766--2773},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1051},
doi = {10.1093/BIOINFORMATICS/BTY1051},
timestamp = {Mon, 16 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoWLZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoYZBP19,
author = {Yunan Luo and
Yun William Yu and
Jianyang Zeng and
Bonnie Berger and
Jian Peng},
title = {Metagenomic binning through low-density hashing},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {219--226},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty611},
doi = {10.1093/BIOINFORMATICS/BTY611},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoYZBP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoZYZLWLZYXLZZ19,
author = {Jiaqi Luo and
Tianliangwen Zhou and
Xiaobin You and
Yi Zi and
Xiaoting Li and
Yangming Wu and
Zhaoji Lan and
Qihuan Zhi and
Dandan Yi and
Lei Xu and
Ang Li and
Zaixuan Zhong and
Mei Zhu and
Gang Sun and
Tao Zhu and
Jianmei Rao and
Luhua Lin and
Jianfeng Sang and
Yujian Shi},
title = {Assessing concordance among human, in silico predictions and functional
assays on genetic variant classification},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5163--5170},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz442},
doi = {10.1093/BIOINFORMATICS/BTZ442},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoZYZLWLZYXLZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LusitoFDOMFB19,
author = {Eleonora Lusito and
Barbara Felice and
Giovanni D'Ario and
Alessandro Ogier and
Francesca Montani and
Pier Paolo Di Fiore and
Fabrizio Bianchi},
title = {Unraveling the role of low-frequency mutated genes in breast cancer},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {36--46},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty520},
doi = {10.1093/BIOINFORMATICS/BTY520},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LusitoFDOMFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaAZWWYW19,
author = {Jing Ma and
Ke An and
Jing{-}Bo Zhou and
Nuo{-}Si Wu and
Yang Wang and
Zhi{-}Qiang Ye and
Yun{-}Dong Wu},
title = {WDSPdb: an updated resource for {WD40} proteins},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4824--4826},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz460},
doi = {10.1093/BIOINFORMATICS/BTZ460},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaAZWWYW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaHKZFZLLWLRCKL19,
author = {Tianzhou Ma and
Zhiguang Huo and
Anche Kuo and
Li Zhu and
Zhou Fang and
Xiangrui Zeng and
Chien{-}Wei Lin and
Silvia Liu and
Lin Wang and
Peng Liu and
Tanbin Rahman and
Lun{-}Ching Chang and
Sunghwan Kim and
Jia Li and
Yongseok Park and
Chi Song and
Steffi Oesterreich and
Etienne Sibille and
George C. Tseng},
title = {MetaOmics: analysis pipeline and browser-based software suite for
transcriptomic meta-analysis},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1597--1599},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty825},
doi = {10.1093/BIOINFORMATICS/BTY825},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaHKZFZLLWLRCKL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaKAWRNSPRHHSGG19,
author = {Jing Ma and
Alla Karnovsky and
Farsad Afshinnia and
Janis E. Wigginton and
Daniel J. Rader and
Loki Natarajan and
Kumar Sharma and
Anna C. Porter and
Mahboob Rahman and
Jiang He and
Lee Hamm and
Tariq Shafi and
Debbie S. Gipson and
Crystal Gadegbeku and
Harold Feldman and
George Michailidis},
title = {Differential network enrichment analysis reveals novel lipid pathways
in chronic kidney disease},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3441--3452},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz114},
doi = {10.1093/BIOINFORMATICS/BTZ114},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaKAWRNSPRHHSGG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaSMLM19,
author = {Anjun Ma and
Minxuan Sun and
Adam McDermaid and
Bingqiang Liu and
Qin Ma},
title = {MetaQUBIC: a computational pipeline for gene-level functional profiling
of metagenome and metatranscriptome},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4474--4477},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz414},
doi = {10.1093/BIOINFORMATICS/BTZ414},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaSMLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaSMLM19a,
author = {Anjun Ma and
Minxuan Sun and
Adam McDermaid and
Bingqiang Liu and
Qin Ma},
title = {MetaQUBIC: a computational pipeline for gene-level functional profiling
of metagenome and metatranscriptome},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5397},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz696},
doi = {10.1093/BIOINFORMATICS/BTZ696},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaSMLM19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaddenBY19,
author = {Thomas L. Madden and
Ben Busby and
Jian Ye},
title = {Reply to the paper: Misunderstood parameters of {NCBI} {BLAST} impacts
the correctness of bioinformatics workflows},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2699--2700},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1026},
doi = {10.1093/BIOINFORMATICS/BTY1026},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaddenBY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagiBBMSGBPPMGV19,
author = {Alberto Magi and
Davide Bolognini and
Niccol{\'{o}} Bartalucci and
Alessandra Mingrino and
Roberto Semeraro and
Luna Giovannini and
Stefania Bonifacio and
Daniela Parrini and
Elisabetta Pelo and
Francesco Mannelli and
Paola Guglielmelli and
Alessandro Maria Vannucchi},
title = {Nano-GLADIATOR: real-time detection of copy number alterations from
nanopore sequencing data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4213--4221},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz241},
doi = {10.1093/BIOINFORMATICS/BTZ241},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagiBBMSGBPPMGV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaharajTH19,
author = {Sridevi Maharaj and
Brennan Tracy and
Wayne B. Hayes},
title = {{BLANT} - fast graphlet sampling tool},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5363--5364},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz603},
doi = {10.1093/BIOINFORMATICS/BTZ603},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaharajTH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaiersHGBBSLL19,
author = {Martin Maiers and
Michael Halagan and
Loren Gragert and
Pradeep Bashyal and
Jason Brelsford and
Joel Schneider and
Polina Lutsker and
Yoram Louzoun},
title = {{GRIMM:} GRaph IMputation and matching for {HLA} genotypes},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3520--3523},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz050},
doi = {10.1093/BIOINFORMATICS/BTZ050},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaiersHGBBSLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MakrodimitrisHR19,
author = {Stavros Makrodimitris and
Roeland C. H. J. van Ham and
Marcel J. T. Reinders},
title = {Improving protein function prediction using protein sequence and GO-term
similarities},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1116--1124},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty751},
doi = {10.1093/BIOINFORMATICS/BTY751},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MakrodimitrisHR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Malod-DogninP19,
author = {No{\"{e}}l Malod{-}Dognin and
Natasa Przulj},
title = {Functional geometry of protein interactomes},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3727--3734},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz146},
doi = {10.1093/BIOINFORMATICS/BTZ146},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Malod-DogninP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManavalanBSWL19,
author = {Balachandran Manavalan and
Shaherin Basith and
Tae Hwan Shin and
Leyi Wei and
Gwang Lee},
title = {mAHTPred: a sequence-based meta-predictor for improving the prediction
of anti-hypertensive peptides using effective feature representation},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2757--2765},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1047},
doi = {10.1093/BIOINFORMATICS/BTY1047},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManavalanBSWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MapelliNPGCC19,
author = {Sarah N. Mapelli and
Sara Napoli and
Giuseppina Pisignano and
Ramon Garcia{-}Escudero and
Giuseppina M. Carbone and
Carlo V. Catapano},
title = {Deciphering the complexity of human non-coding promoter-proximal transcriptome},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2529--2534},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty981},
doi = {10.1093/BIOINFORMATICS/BTY981},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MapelliNPGCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarbacS19,
author = {Matthieu Marbac and
Mohammed Sedki},
title = {VarSelLCM: an {R/C++} package for variable selection in model-based
clustering of mixed-data with missing values},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1255--1257},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty786},
doi = {10.1093/BIOINFORMATICS/BTY786},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarbacS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarcaisDPK19,
author = {Guillaume Mar{\c{c}}ais and
Dan F. DeBlasio and
Prashant Pandey and
Carl Kingsford},
title = {Locality-sensitive hashing for the edit distance},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i127--i135},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz354},
doi = {10.1093/BIOINFORMATICS/BTZ354},
timestamp = {Tue, 06 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarcaisDPK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarguetLC19,
author = {Aline Marguet and
Marc Lavielle and
Eugenio Cinquemani},
title = {Inheritance and variability of kinetic gene expression parameters
in microbial cells: modeling and inference from lineage tree data},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i586--i595},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz378},
doi = {10.1093/BIOINFORMATICS/BTZ378},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarguetLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarieG19,
author = {Veronna Marie and
Michelle Gordon},
title = {Gag-protease coevolution shapes the outcome of lopinavir-inclusive
treatment regimens in chronically infected {HIV-1} subtype {C} patients},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3219--3223},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz076},
doi = {10.1093/BIOINFORMATICS/BTZ076},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarieG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarijonCV19,
author = {Pierre Marijon and
Rayan Chikhi and
Jean{-}St{\'{e}}phane Varr{\'{e}}},
title = {Graph analysis of fragmented long-read bacterial genome assemblies},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4239--4246},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz219},
doi = {10.1093/BIOINFORMATICS/BTZ219},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarijonCV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MariniVRDA19,
author = {Simone Marini and
Francesca Vitali and
Sara Rampazzi and
Andrea Demartini and
Tatsuya Akutsu},
title = {Protease target prediction via matrix factorization},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {923--929},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty746},
doi = {10.1093/BIOINFORMATICS/BTY746},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MariniVRDA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarksD19,
author = {Claire Marks and
Charlotte M. Deane},
title = {Increasing the accuracy of protein loop structure prediction with
evolutionary constraints},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2585--2592},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty996},
doi = {10.1093/BIOINFORMATICS/BTY996},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarksD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarquesO19,
author = {Jo{\~{a}}o C. Marques and
Michael B. Orger},
title = {Clusterdv: a simple density-based clustering method that is robust,
general and automatic},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2125--2132},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty932},
doi = {10.1093/BIOINFORMATICS/BTY932},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarquesO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarreroIRD19,
author = {Miguel Correa Marrero and
Richard G. H. Immink and
Dick de Ridder and
Aalt D. J. van Dijk},
title = {Improved inference of intermolecular contacts through protein-protein
interaction prediction using coevolutionary analysis},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2036--2042},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty924},
doi = {10.1093/BIOINFORMATICS/BTY924},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarreroIRD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartellMMMW19,
author = {Henry J. Martell and
Stuart G. Masterson and
Jake E. McGreig and
Martin Michaelis and
Mark N. Wass},
title = {Is the Bombali virus pathogenic in humans?},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3553--3558},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz267},
doi = {10.1093/BIOINFORMATICS/BTZ267},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartellMMMW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Martorell-Marugan19,
author = {Jordi Martorell{-}Marugan and
V{\'{\i}}ctor Gonz{\'{a}}lez{-}Rumayor and
Pedro Carmona{-}Saez},
title = {mCSEA: detecting subtle differentially methylated regions},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3257--3262},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz096},
doi = {10.1093/BIOINFORMATICS/BTZ096},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Martorell-Marugan19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasseroliCPKGHN19,
author = {Marco Masseroli and
Arif Canakoglu and
Pietro Pinoli and
Abdulrahman Kaitoua and
Andrea Gulino and
Olha Horlova and
Luca Nanni and
Anna Bernasconi and
Stefano Perna and
Eirini Stamoulakatou and
Stefano Ceri},
title = {Processing of big heterogeneous genomic datasets for tertiary analysis
of Next Generation Sequencing data},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {729--736},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty688},
doi = {10.1093/BIOINFORMATICS/BTY688},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MasseroliCPKGHN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasutaniM19,
author = {Bansho Masutani and
Shinichi Morishita},
title = {A framework and an algorithm to detect low-abundance {DNA} by a handy
sequencer and a palm-sized computer},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {584--592},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty663},
doi = {10.1093/BIOINFORMATICS/BTY663},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MasutaniM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasutaniM19a,
author = {Bansho Masutani and
Shinichi Morishita},
title = {A framework and an algorithm to detect low-abundance {DNA} by a handy
sequencer and a palm-sized computer},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1443},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty771},
doi = {10.1093/BIOINFORMATICS/BTY771},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MasutaniM19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatlockRGP19,
author = {Kevin Matlock and
Raziur Rahman and
Souparno Ghosh and
Ranadip Pal},
title = {Sstack: an {R} package for stacking with applications to scenarios
involving sequential addition of samples and features},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3143--3145},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz010},
doi = {10.1093/BIOINFORMATICS/BTZ010},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatlockRGP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatsutaniUFH19,
author = {Taro Matsutani and
Yuki Ueno and
Tsukasa Fukunaga and
Michiaki Hamada},
title = {Discovering novel mutation signatures by latent Dirichlet allocation
with variational Bayes inference},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4543--4552},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz266},
doi = {10.1093/BIOINFORMATICS/BTZ266},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatsutaniUFH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MauguenSBO19,
author = {Audrey Mauguen and
Venkatraman E. Seshan and
Colin B. Begg and
Irina Ostrovnaya},
title = {Testing clonal relatedness of two tumors from the same patient based
on their mutational profiles: update of the Clonality {R} package},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4776--4778},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz486},
doi = {10.1093/BIOINFORMATICS/BTZ486},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MauguenSBO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Maurer-StrohKKG19,
author = {Sebastian Maurer{-}Stroh and
Nora L. Krutz and
Petra S. Kern and
Vithiagaran Gunalan and
Minh N. Nguyen and
Vachiranee Limviphuvadh and
Frank Eisenhaber and
G. Frank Gerberick},
title = {AllerCatPro - prediction of protein allergenicity potential from the
protein sequence},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3020--3027},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz029},
doi = {10.1093/BIOINFORMATICS/BTZ029},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Maurer-StrohKKG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MautnerMMRCB19,
author = {Stefan Mautner and
Soheila Montaseri and
Milad Miladi and
Martin Raden and
Fabrizio Costa and
Rolf Backofen},
title = {ShaKer: {RNA} {SHAPE} prediction using graph kernel},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i354--i359},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz395},
doi = {10.1093/BIOINFORMATICS/BTZ395},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MautnerMMRCB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayolCCO19,
author = {Eduardo Mayol and
Mercedes Campillo and
Arnau Cordom{\'{\i}} and
Mireia Olivella},
title = {Inter-residue interactions in alpha-helical transmembrane proteins},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2578--2584},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty978},
doi = {10.1093/BIOINFORMATICS/BTY978},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MayolCCO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McInnesTDLOAR19,
author = {Gregory McInnes and
Yosuke Tanigawa and
Chris DeBoever and
Adam Lavertu and
Julia Eve Olivieri and
Matthew Aguirre and
Manuel A. Rivas},
title = {Global Biobank Engine: enabling genotype-phenotype browsing for biobank
summary statistics},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2495--2497},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty999},
doi = {10.1093/BIOINFORMATICS/BTY999},
timestamp = {Fri, 10 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McInnesTDLOAR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McLeanHPD19,
author = {Cory Y. McLean and
Yeongwoo Hwang and
Ryan Poplin and
Mark A. DePristo},
title = {GenomeWarp: an alignment-based variant coordinate transformation},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4389--4391},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz218},
doi = {10.1093/BIOINFORMATICS/BTZ218},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/McLeanHPD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McNairZDSE19,
author = {Katelyn McNair and
Carol Zhou and
Elizabeth A. Dinsdale and
Brian Souza and
Robert A. Edwards},
title = {{PHANOTATE:} a novel approach to gene identification in phage genomes},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4537--4542},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz265},
doi = {10.1093/BIOINFORMATICS/BTZ265},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McNairZDSE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MehdiBGL19,
author = {Tahmid Mehdi and
Swneke D. Bailey and
Paul Guilhamon and
Mathieu Lupien},
title = {{C3D:} a tool to predict 3D genomic interactions between cis-regulatory
elements},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {877--879},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty717},
doi = {10.1093/BIOINFORMATICS/BTY717},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MehdiBGL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MehdiSMM19,
author = {Tahmid F. Mehdi and
Gurdeep Singh and
Jennifer A Mitchell and
Alan M. Moses},
title = {Variational infinite heterogeneous mixture model for semi-supervised
clustering of heart enhancers},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3232--3239},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz064},
doi = {10.1093/BIOINFORMATICS/BTZ064},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MehdiSMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MehtaC19,
author = {Akul Y. Mehta and
Richard D. Cummings},
title = {{GLAD:} GLycan Array Dashboard, a visual analytics tool for glycan
microarrays},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3536--3537},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz075},
doi = {10.1093/BIOINFORMATICS/BTZ075},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MehtaC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeijsenRCHPDMN19,
author = {Joeri J. Meijsen and
Alexandros Rammos and
Archie Campbell and
Caroline Hayward and
David J. Porteous and
Ian J. Deary and
Riccardo E. Marioni and
Kristin K. Nicodemus},
title = {Using tree-based methods for detection of gene-gene interactions in
the presence of a polygenic signal: simulation study with application
to educational attainment in the Generation Scotland Cohort Study},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {181--188},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty462},
doi = {10.1093/BIOINFORMATICS/BTY462},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeijsenRCHPDMN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeloH19,
author = {Arthur T. O. Melo and
Iago Hale},
title = {Expanded functionality, increased accuracy, and enhanced speed in
the de novo genotyping-by-sequencing pipeline {GBS-SNP-CROP}},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1783--1785},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty873},
doi = {10.1093/BIOINFORMATICS/BTY873},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeloH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeloH19a,
author = {Arthur T. O. Melo and
Iago Hale},
title = {Expanded functionality, increased accuracy, and enhanced speed in
the de novo genotyping-by-sequencing pipeline {GBS-SNP-CROP}},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3215},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1073},
doi = {10.1093/BIOINFORMATICS/BTY1073},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeloH19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MelstedNP19,
author = {P{\'{a}}ll Melsted and
Vasilis Ntranos and
Lior Pachter},
title = {The barcode, UMI, set format and BUStools},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4472--4473},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz279},
doi = {10.1093/BIOINFORMATICS/BTZ279},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MelstedNP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MerkelFCMSGH19,
author = {Angelika Merkel and
Marcos Fern{\'{a}}ndez{-}Callejo and
Eloi Casals and
Santiago Marco{-}Sola and
Ronald P. Schuyler and
Ivo Glynne Gut and
Simon C. Heath},
title = {gemBS: high throughput processing for {DNA} methylation data from
bisulfite sequencing},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {737--742},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty690},
doi = {10.1093/BIOINFORMATICS/BTY690},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MerkelFCMSGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyderKSFFFR19,
author = {Agnes Meyder and
Stefanie Kampen and
Jochen Sieg and
Rainer F{\"{a}}hrrolfes and
Nils{-}Ole Friedrich and
Florian Flachsenberg and
Matthias Rarey},
title = {StructureProfiler: an all-in-one tool for 3D protein structure profiling},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {874--876},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty692},
doi = {10.1093/BIOINFORMATICS/BTY692},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyderKSFFFR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeysmanNGTOL19,
author = {Pieter Meysman and
Nicolas De Neuter and
Sofie Gielis and
Danh Bui Thi and
Benson Ogunjimi and
Kris Laukens},
title = {On the viability of unsupervised T-cell receptor sequence clustering
for epitope preference},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1461--1468},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty821},
doi = {10.1093/BIOINFORMATICS/BTY821},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeysmanNGTOL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MichelHE19,
author = {Mirco Michel and
David Men{\'{e}}ndez Hurtado and
Arne Elofsson},
title = {PconsC4: fast, accurate and hassle-free contact predictions},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2677--2679},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1036},
doi = {10.1093/BIOINFORMATICS/BTY1036},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MichelHE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MierA19,
author = {Pablo Mier and
Miguel A. Andrade{-}Navarro},
title = {Traitpedia: a collaborative effort to gather species traits},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1079--1081},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty743},
doi = {10.1093/BIOINFORMATICS/BTY743},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MierA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiettinenOBS19,
author = {Arttu Miettinen and
Ioannis Vogiatzis Oikonomidis and
Anne Bonnin and
Marco Stampanoni},
title = {NRStitcher: non-rigid stitching of terapixel-scale volumetric images},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5290--5297},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz423},
doi = {10.1093/BIOINFORMATICS/BTZ423},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiettinenOBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MikheenkoK19,
author = {Alla Mikheenko and
Mikhail Kolmogorov},
title = {Assembly Graph Browser: interactive visualization of assembly graphs},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3476--3478},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz072},
doi = {10.1093/BIOINFORMATICS/BTZ072},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MikheenkoK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiladiMBR19,
author = {Milad Miladi and
Soheila Montaseri and
Rolf Backofen and
Martin Raden},
title = {Integration of accessibility data from structure probing into {RNA-RNA}
interaction prediction},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2862--2864},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1029},
doi = {10.1093/BIOINFORMATICS/BTY1029},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiladiMBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillardDGHBL19,
author = {Pierre Millard and
Baudoin Del{\'{e}}pine and
Matthieu Guionnet and
Maud Heuillet and
Floriant Bellvert and
Fabien L{\'{e}}tisse},
title = {IsoCor: isotope correction for high-resolution {MS} labeling experiments},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4484--4487},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz209},
doi = {10.1093/BIOINFORMATICS/BTZ209},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MillardDGHBL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillerPR19,
author = {Justin Miller and
Brandon D. Pickett and
Perry G. Ridge},
title = {JustOrthologs: a fast, accurate and user-friendly ortholog identification
algorithm},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {546--552},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty669},
doi = {10.1093/BIOINFORMATICS/BTY669},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MillerPR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillerPRJV19,
author = {Joseph T. Miller and
Rebecca Pirzl and
Dan Rosauer and
Garry Jolley{-}Rogers and
Temi Varghese},
title = {Phylolink: phylogenetically-based profiling, visualisations and metrics
for biodiversity},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1229--1230},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty792},
doi = {10.1093/BIOINFORMATICS/BTY792},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MillerPRJV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinSL19,
author = {Eun Jeong Min and
Sandra E. Safo and
Qi Long},
title = {Penalized co-inertia analysis with applications to -omics data},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1018--1025},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty726},
doi = {10.1093/BIOINFORMATICS/BTY726},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinadakisZOS19,
author = {George Minadakis and
Margarita Zachariou and
Anastasis Oulas and
George M. Spyrou},
title = {PathwayConnector: finding complementary pathways to enhance functional
analysis},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {889--891},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty693},
doi = {10.1093/BIOINFORMATICS/BTY693},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinadakisZOS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MingroneSB19,
author = {Joseph Mingrone and
Edward Susko and
Joseph P. Bielawski},
title = {ModL: exploring and restoring regularity when testing for positive
selection},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2545--2554},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1019},
doi = {10.1093/BIOINFORMATICS/BTY1019},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MingroneSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiottoORACLTM19,
author = {Mattia Miotto and
Pier Paolo Olimpieri and
Lorenzo Di Rienzo and
Francesco Ambrosetti and
Pietro Corsi and
Rosalba Lepore and
Gian Gaetano Tartaglia and
Edoardo Milanetti},
title = {Insights on protein thermal stability: a graph representation of molecular
interactions},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2569--2577},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1011},
doi = {10.1093/BIOINFORMATICS/BTY1011},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiottoORACLTM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiraskarshahiZS19,
author = {Reza Miraskarshahi and
Hooman Zabeti and
Tamon Stephen and
Leonid Chindelevitch},
title = {{MCS2:} minimal coordinated supports for fast enumeration of minimal
cut sets in metabolic networks},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i615--i623},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz393},
doi = {10.1093/BIOINFORMATICS/BTZ393},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiraskarshahiZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirditaSS19,
author = {Milot Mirdita and
Martin Steinegger and
Johannes S{\"{o}}ding},
title = {MMseqs2 desktop and local web server app for fast, interactive sequence
searches},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2856--2858},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1057},
doi = {10.1093/BIOINFORMATICS/BTY1057},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirditaSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MishraPH19,
author = {Avdesh Mishra and
Pujan Pokhrel and
Md. Tamjidul Hoque},
title = {StackDPPred: a stacking based prediction of DNA-binding protein from
sequence},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {433--441},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty653},
doi = {10.1093/BIOINFORMATICS/BTY653},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MishraPH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MlecnikGB19,
author = {Bernhard Mlecnik and
J{\'{e}}r{\^{o}}me Galon and
Gabriela Bindea},
title = {Automated exploration of gene ontology term and pathway networks with
ClueGO-REST},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3864--3866},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz163},
doi = {10.1093/BIOINFORMATICS/BTZ163},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MlecnikGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoermanSGSMAA19,
author = {Thomas Moerman and
Sara Aibar Santos and
Carmen Bravo Gonz{\'{a}}lez{-}Blas and
Jaak Simm and
Yves Moreau and
Jan Aerts and
Stein Aerts},
title = {GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory
networks},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2159--2161},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty916},
doi = {10.1093/BIOINFORMATICS/BTY916},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoermanSGSMAA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohantyVFCTS19,
author = {Anwoy Kumar Mohanty and
Dana Vuzman and
Laurent C. Francioli and
Christopher Cassa and
{\'{A}}gnes T{\'{o}}th{-}Petr{\'{o}}czy and
Shamil R. Sunyaev},
title = {novoCaller: a Bayesian network approach for de novo variant calling
from pedigree and population sequence data},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1174--1180},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty749},
doi = {10.1093/BIOINFORMATICS/BTY749},
timestamp = {Wed, 29 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohantyVFCTS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MolloyW19,
author = {Erin K. Molloy and
Tandy J. Warnow},
title = {TreeMerge: a new method for improving the scalability of species tree
estimation methods},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i417--i426},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz344},
doi = {10.1093/BIOINFORMATICS/BTZ344},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MolloyW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MongerTIDG19,
author = {Steven Monger and
Michael Troup and
Eddie Ip and
Sally L. Dunwoodie and
Eleni Giannoulatou},
title = {Spliceogen: an integrative, scalable tool for the discovery of splice-altering
variants},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4405--4407},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz263},
doi = {10.1093/BIOINFORMATICS/BTZ263},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MongerTIDG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MontanucciMBF19,
author = {Ludovica Montanucci and
Pier Luigi Martelli and
Nir Ben{-}Tal and
Piero Fariselli},
title = {A natural upper bound to the accuracy of predicting protein stability
changes upon mutations},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1513--1517},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty880},
doi = {10.1093/BIOINFORMATICS/BTY880},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MontanucciMBF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MontanucciSMCF19,
author = {Ludovica Montanucci and
Castrense Savojardo and
Pier Luigi Martelli and
Rita Casadio and
Piero Fariselli},
title = {On the biases in predictions of protein stability changes upon variations:
the {INPS} test case},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2525--2527},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty979},
doi = {10.1093/BIOINFORMATICS/BTY979},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MontanucciSMCF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoraisAD19,
author = {Diego A. A. Morais and
Rita M. C. Almeida and
Rodrigo J. S. Dalmolin},
title = {Transcriptogramer: an R/Bioconductor package for transcriptional analysis
based on protein-protein interaction},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2875--2876},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz007},
doi = {10.1093/BIOINFORMATICS/BTZ007},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoraisAD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoraisSLM19,
author = {Camilo L. M. Morais and
Marfran C. D. Santos and
K{\'{a}}ssio M. G. Lima and
Francis L. Martin},
title = {Improving data splitting for classification applications in spectrochemical
analyses employing a random-mutation Kennard-Stone algorithm approach},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5257--5263},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz421},
doi = {10.1093/BIOINFORMATICS/BTZ421},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoraisSLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorelKS19,
author = {Benoit Morel and
Alexey M. Kozlov and
Alexandros Stamatakis},
title = {ParGenes: a tool for massively parallel model selection and phylogenetic
tree inference on thousands of genes},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1771--1773},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty839},
doi = {10.1093/BIOINFORMATICS/BTY839},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorelKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorganTNS19,
author = {Daniel Morgan and
Andreas Tj{\"{a}}rnberg and
Torbj{\"{o}}rn E. M. Nordling and
Erik L. L. Sonnhammer},
title = {A generalized framework for controlling {FDR} in gene regulatory network
inference},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1026--1032},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty764},
doi = {10.1093/BIOINFORMATICS/BTY764},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorganTNS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorinLLSTTTGMGB19,
author = {S{\'{e}}bastien Morin and
Troels E. Linnet and
Mathilde Lescanne and
Paul Schanda and
Gary S. Thompson and
Martin Tollinger and
Kaare Teilum and
St{\'{e}}phane Gagn{\'{e}} and
Dominique Marion and
Christian Griesinger and
Martin Blackledge and
Edward J. d'Auvergne},
title = {relax: the analysis of biomolecular kinetics and thermodynamics using
{NMR} relaxation dispersion data},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4205},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz397},
doi = {10.1093/BIOINFORMATICS/BTZ397},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorinLLSTTTGMGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoriyamaIHSMY19,
author = {Takuya Moriyama and
Seiya Imoto and
Shuto Hayashi and
Yuichi Shiraishi and
Satoru Miyano and
Rui Yamaguchi},
title = {A Bayesian model integration for mutation calling through data partitioning},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4247--4254},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz233},
doi = {10.1093/BIOINFORMATICS/BTZ233},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoriyamaIHSMY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MortonWBCBKFT19,
author = {Kenneth Morton and
Patrick Wang and
Chris Bizon and
Steven Cox and
James P. Balhoff and
Yaphet Kebede and
Karamarie Fecho and
Alexander Tropsha},
title = {{ROBOKOP:} an abstraction layer and user interface for knowledge graphs
to support question answering},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5382--5384},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz604},
doi = {10.1093/BIOINFORMATICS/BTZ604},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MortonWBCBKFT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MosePP19,
author = {Lisle E. Mose and
Charles M. Perou and
Joel S. Parker},
title = {Improved indel detection in {DNA} and {RNA} via realignment with {ABRA2}},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2966--2973},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz033},
doi = {10.1093/BIOINFORMATICS/BTZ033},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MosePP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MosheP19,
author = {Asher Moshe and
Tal Pupko},
title = {Ancestral sequence reconstruction: accounting for structural information
by averaging over replacement matrices},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2562--2568},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1031},
doi = {10.1093/BIOINFORMATICS/BTY1031},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MosheP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoshiriRWM19,
author = {Niema Moshiri and
Manon Ragonnet{-}Cronin and
Joel O. Wertheim and
Siavash Mirarab},
title = {{FAVITES:} simultaneous simulation of transmission networks, phylogenetic
trees and sequences},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1852--1861},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty921},
doi = {10.1093/BIOINFORMATICS/BTY921},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoshiriRWM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MourraguiLWRW19,
author = {Soufiane Mourragui and
Marco Loog and
Mark A. van de Wiel and
Marcel J. T. Reinders and
Lodewyk F. A. Wessels},
title = {{PRECISE:} a domain adaptation approach to transfer predictors of
drug response from pre-clinical models to tumors},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i510--i519},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz372},
doi = {10.1093/BIOINFORMATICS/BTZ372},
timestamp = {Sat, 30 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MourraguiLWRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuggliAB19,
author = {Martin D. Muggli and
Bahar Alipanahi and
Christina Boucher},
title = {Building large updatable colored de Bruijn graphs via merging},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i51--i60},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz350},
doi = {10.1093/BIOINFORMATICS/BTZ350},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuggliAB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuhammodAFSSD19,
author = {Rafsanjani Muhammod and
Sajid Ahmed and
Dewan Md. Farid and
Swakkhar Shatabda and
Alok Sharma and
Abdollah Dehzangi},
title = {PyFeat: a Python-based effective feature generation tool for DNA,
{RNA} and protein sequences},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3831--3833},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz165},
doi = {10.1093/BIOINFORMATICS/BTZ165},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuhammodAFSSD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeeAKSB19,
author = {Kingshuk Mukherjee and
Bahar Alipanahi and
Tamer Kahveci and
Leena Salmela and
Christina Boucher},
title = {Aligning optical maps to de Bruijn graphs},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3250--3256},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz069},
doi = {10.1093/BIOINFORMATICS/BTZ069},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeeAKSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeeMGRBS19,
author = {Sumit Mukherjee and
Sukhen Das Mandal and
Nikita Gupta and
Matan Drory Retwitzer and
Danny Barash and
Supratim Sengupta},
title = {RiboD: a comprehensive database for prokaryotic riboswitches},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3541--3543},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz093},
doi = {10.1093/BIOINFORMATICS/BTZ093},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeeMGRBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeePDSOPC19,
author = {Sumit Mukherjee and
Thanneer M. Perumal and
Kenneth Daily and
Solveig K. Sieberts and
Larsson Omberg and
Christoph Preuss and
Gregory W. Carter and
Lara M. Mangravite and
Benjamin A. Logsdon},
title = {Identifying and ranking potential driver genes of Alzheimer's disease
using multiview evidence aggregation},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i568--i576},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz365},
doi = {10.1093/BIOINFORMATICS/BTZ365},
timestamp = {Thu, 06 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeePDSOPC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukhopadhyayBPT19,
author = {Abhik Mukhopadhyay and
Neera Borkakoti and
Luk{\'{a}}s Pravda and
Jonathan D. Tyzack and
Janet M. Thornton and
Sameer Velankar},
title = {Finding enzyme cofactors in Protein Data Bank},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3510--3511},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz115},
doi = {10.1093/BIOINFORMATICS/BTZ115},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukhopadhyayBPT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuldoonYFB19,
author = {Joseph J. Muldoon and
Jessica S. Yu and
Mohammad{-}Kasim Fassia and
Neda Bagheri},
title = {Network inference performance complexity: a consequence of topological,
experimental and algorithmic determinants},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3421--3432},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz105},
doi = {10.1093/BIOINFORMATICS/BTZ105},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuldoonYFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MullerC19,
author = {Robert M{\"{u}}ller and
C{\'{e}}dric Chauve},
title = {HyAsP, a greedy tool for plasmids identification},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4436--4439},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz413},
doi = {10.1093/BIOINFORMATICS/BTZ413},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MullerC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MustafaSKERK19,
author = {Harun Mustafa and
Ingo Schilken and
Mikhail Karasikov and
Carsten Eickhoff and
Gunnar R{\"{a}}tsch and
Andr{\'{e}} Kahles},
title = {Dynamic compression schemes for graph coloring},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {407--414},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty632},
doi = {10.1093/BIOINFORMATICS/BTY632},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MustafaSKERK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Naderi-MeshkinL19,
author = {Hojjat Naderi{-}Meshkin and
Xin Lai and
Raheleh Amirkhah and
Julio Vera and
John E. J. Rasko and
Ulf Schmitz},
title = {Exosomal lncRNAs and cancer: connecting the missing links},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {352--360},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty527},
doi = {10.1093/BIOINFORMATICS/BTY527},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Naderi-MeshkinL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NairKPK19,
author = {Surag Nair and
Daniel S. Kim and
Jacob Perricone and
Anshul Kundaje},
title = {Integrating regulatory {DNA} sequence and gene expression to predict
genome-wide chromatin accessibility across cellular contexts},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i108--i116},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz352},
doi = {10.1093/BIOINFORMATICS/BTZ352},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NairKPK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NajafovN19,
author = {Jamil Najafov and
Ayaz Najafov},
title = {{GECO:} gene expression correlation analysis after genetic algorithm-driven
deconvolution},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {156--159},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty623},
doi = {10.1093/BIOINFORMATICS/BTY623},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NajafovN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NamJCLS19,
author = {Yonghyun Nam and
Jong Ho Jhee and
Junhee Cho and
Ji{-}Hyun Lee and
Hyunjung Shin},
title = {Disease gene identification based on generic and disease-specific
genome networks},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1923--1930},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty882},
doi = {10.1093/BIOINFORMATICS/BTY882},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NamJCLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NanniB19,
author = {Loris Nanni and
Sheryl Brahnam},
title = {Set of approaches based on 3D structure and position specific-scoring
matrix for predicting DNA-binding proteins},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1844--1851},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty912},
doi = {10.1093/BIOINFORMATICS/BTY912},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NanniB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NarykovBK19,
author = {Oleksandr Narykov and
Dmytro Bogatov and
Dmitry Korkin},
title = {{DISPOT:} a simple knowledge-based protein domain interaction statistical
potential},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5374--5378},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz587},
doi = {10.1093/BIOINFORMATICS/BTZ587},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NarykovBK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaseriHZZ19,
author = {Ardalan Naseri and
Erwin Holzhauser and
Degui Zhi and
Shaojie Zhang},
title = {Efficient haplotype matching between a query and a panel for genealogical
search},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i233--i241},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz347},
doi = {10.1093/BIOINFORMATICS/BTZ347},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaseriHZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NashL19,
author = {Alexander J. Nash and
Boris Lenhard},
title = {A novel measure of non-coding genome conservation identifies genomic
regulatory blocks within primates},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2354--2361},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1014},
doi = {10.1093/BIOINFORMATICS/BTY1014},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NashL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NavarroLS19,
author = {Jos{\'{e}} Fern{\'{a}}ndez Navarro and
Joakim Lundeberg and
Patrik L. St{\aa}hl},
title = {{ST} viewer: a tool for analysis and visualization of spatial transcriptomics
datasets},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1058--1060},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty714},
doi = {10.1093/BIOINFORMATICS/BTY714},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NavarroLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NavarroSMG19,
author = {Gonzalo Navarro and
Victor Sepulveda and
Mauricio Mar{\'{\i}}n and
Sen{\'{e}}n Gonz{\'{a}}lez},
title = {Compressed filesystem for managing large genome collections},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4120--4128},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz192},
doi = {10.1093/BIOINFORMATICS/BTZ192},
timestamp = {Wed, 28 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NavarroSMG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaylorFK19,
author = {Jonathan Naylor and
Harold Fellermann and
Natalio Krasnogor},
title = {Easybiotics: a {GUI} for 3D physical modelling of multi-species bacterial
populations},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3859--3860},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz131},
doi = {10.1093/BIOINFORMATICS/BTZ131},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaylorFK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NealTKJCCG19,
author = {Maxwell Lewis Neal and
Christopher T. Thompson and
Karam G. Kim and
Ryan C. James and
Daniel L. Cook and
Brian E. Carlson and
John H. Gennari},
title = {SemGen: a tool for semantics-based annotation and composition of biosimulation
models},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1600--1602},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty829},
doi = {10.1093/BIOINFORMATICS/BTY829},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NealTKJCCG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Nembrini19,
author = {Stefano Nembrini},
title = {Bias in the intervention in prediction measure in random forests:
illustrations and recommendations},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2343--2345},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty959},
doi = {10.1093/BIOINFORMATICS/BTY959},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Nembrini19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Nembrini19a,
author = {Stefano Nembrini},
title = {On what to permute in test-based approaches for variable importance
measures in Random Forests},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2701--2705},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1025},
doi = {10.1093/BIOINFORMATICS/BTY1025},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Nembrini19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeuenschwanderM19,
author = {Samuel Neuenschwander and
Fr{\'{e}}d{\'{e}}ric Michaud and
J{\'{e}}r{\^{o}}me Goudet},
title = {QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic
scenarios, forward and backward in time},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {886--888},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty737},
doi = {10.1093/BIOINFORMATICS/BTY737},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeuenschwanderM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgoWW19,
author = {Vu Ngo and
Mengchi Wang and
Wei Wang},
title = {Finding de novo methylated {DNA} motifs},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3287--3293},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz079},
doi = {10.1093/BIOINFORMATICS/BTZ079},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgoWW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenJEF19,
author = {Huy N. Nguyen and
Ashish Jain and
Oliver Eulenstein and
Iddo Friedberg},
title = {Tracing the ancestry of operons in bacteria},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2998--3004},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz053},
doi = {10.1093/BIOINFORMATICS/BTZ053},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenJEF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenNM19,
author = {Dai Hai Nguyen and
Canh Hao Nguyen and
Hiroshi Mamitsuka},
title = {{ADAPTIVE:} leArning DAta-dePendenT, concIse molecular VEctors for
fast, accurate metabolite identification from tandem mass spectra},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i164--i172},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz319},
doi = {10.1093/BIOINFORMATICS/BTZ319},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenNM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenSDN19,
author = {Hung Nguyen and
Sangam Shrestha and
Sorin Draghici and
Tin Nguyen},
title = {PINSPlus: a tool for tumor subtype discovery in integrated genomic
data},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2843--2846},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1049},
doi = {10.1093/BIOINFORMATICS/BTY1049},
timestamp = {Thu, 09 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenSDN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiHZWLMXLW19,
author = {Peng Ni and
Neng Huang and
Zhi Zhang and
De{-}Peng Wang and
Fan Liang and
Yu Miao and
Chuan{-}Le Xiao and
Feng Luo and
Jianxin Wang},
title = {DeepSignal: detecting {DNA} methylation state from Nanopore sequencing
reads using deep-learning},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4586--4595},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz276},
doi = {10.1093/BIOINFORMATICS/BTZ276},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiHZWLMXLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Nieto-ArellanoS19,
author = {Roc{\'{\i}}o Nieto{-}Arellano and
H{\'{e}}ctor S{\'{a}}nchez{-}Iranzo},
title = {zfRegeneration: a database for gene expression profiling during regeneration},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {703--705},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty659},
doi = {10.1093/BIOINFORMATICS/BTY659},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Nieto-ArellanoS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiinimakiHHK19,
author = {Teppo Mikael Niinim{\"{a}}ki and
Mikko A. Heikkil{\"{a}} and
Antti Honkela and
Samuel Kaski},
title = {Representation transfer for differentially private drug sensitivity
prediction},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i218--i224},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz373},
doi = {10.1093/BIOINFORMATICS/BTZ373},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiinimakiHHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NikamG19,
author = {Rahul Nikam and
M. Michael Gromiha},
title = {Seq2Feature: a comprehensive web-based feature extraction tool},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4797--4799},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz432},
doi = {10.1093/BIOINFORMATICS/BTZ432},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NikamG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NingWZWLKZZXL19,
author = {Chao Ning and
Dan Wang and
Lei Zhou and
Julong Wei and
Yuanxin Liu and
Huimin Kang and
Shengli Zhang and
Xiang Zhou and
Shizhong Xu and
Jian{-}Feng Liu},
title = {Efficient multivariate analysis algorithms for longitudinal genome-wide
association studies},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4879--4885},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz304},
doi = {10.1093/BIOINFORMATICS/BTZ304},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NingWZWLKZZXL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiroulaAN19,
author = {Abhishek Niroula and
Ram Ajore and
Bj{\"{o}}rn Nilsson},
title = {MPRAscore: robust and non-parametric analysis of massively parallel
reporter assays},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5351--5353},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz591},
doi = {10.1093/BIOINFORMATICS/BTZ591},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiroulaAN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NivedithaMMCC19,
author = {Divya Niveditha and
Sudeshna Mukherjee and
Syamantak Majumder and
Rajdeep Chowdhury and
Shibasish Chowdhury},
title = {A global transcriptomic pipeline decoding core network of genes involved
in stages leading to acquisition of drug-resistance to cisplatin in
osteosarcoma cells},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1701--1711},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty868},
doi = {10.1093/BIOINFORMATICS/BTY868},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NivedithaMMCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NobileVSBCLMPB19,
author = {Marco S. Nobile and
Thalia Vlachou and
Simone Spolaor and
Daniela Bossi and
Paolo Cazzaniga and
Luisa Lanfrancone and
Giancarlo Mauri and
Pier Giuseppe Pelicci and
Daniela Besozzi},
title = {Modeling cell proliferation in human acute myeloid leukemia xenografts},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3378--3386},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz063},
doi = {10.1093/BIOINFORMATICS/BTZ063},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NobileVSBCLMPB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoorWPMMBR19,
author = {Zainab Noor and
Jemma X. Wu and
Dana Pascovici and
Abidali Mohamedali and
Mark P. Molloy and
Mark S. Baker and
Shoba Ranganathan},
title = {iSwathX: an interactive web-based application for extension of {DIA}
peptide reference libraries},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {538--539},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty660},
doi = {10.1093/BIOINFORMATICS/BTY660},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NoorWPMMBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NormanC19,
author = {Utku Norman and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {ST-Steiner: a spatio-temporal gene discovery algorithm},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3433--3440},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz110},
doi = {10.1093/BIOINFORMATICS/BTZ110},
timestamp = {Fri, 11 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NormanC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoufailyMCESLM19,
author = {Angela Noufaily and
Roger A. Morbey and
Felipe J. Col{\'{o}}n{-}Gonz{\'{a}}lez and
Alex J. Elliot and
Gillian E. Smith and
Iain R. Lake and
Noel McCarthy},
title = {Comparison of statistical algorithms for daily syndromic surveillance
aberration detection},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3110--3118},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty997},
doi = {10.1093/BIOINFORMATICS/BTY997},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NoufailyMCESLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NovellaKHWCBKS19,
author = {Jon Ander Novella and
Payam Emami Khoonsari and
Stephanie Herman and
Daniel Whitenack and
Marco Capuccini and
Joachim Burman and
Kim Kultima and
Ola Spjuth},
title = {Container-based bioinformatics with Pachyderm},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {839--846},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty699},
doi = {10.1093/BIOINFORMATICS/BTY699},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NovellaKHWCBKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NuriddinovF19,
author = {Miroslav Nuriddinov and
Veniamin Fishman},
title = {C-InterSecture - a computational tool for interspecies comparison
of genome architecture},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4912--4921},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz415},
doi = {10.1093/BIOINFORMATICS/BTZ415},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NuriddinovF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OertonRLGB19,
author = {Erin Oerton and
Ian Roberts and
Patrick S. H. Lewis and
Tim Guilliams and
Andreas Bender},
title = {Understanding and predicting disease relationships through similarity
fusion},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1213--1220},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty754},
doi = {10.1093/BIOINFORMATICS/BTY754},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OertonRLGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlechnovicMKV19,
author = {Kliment Olechnovic and
Bohdan Monastyrskyy and
Andriy Kryshtafovych and
Ceslovas Venclovas},
title = {Comparative analysis of methods for evaluation of protein models against
native structures},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {937--944},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty760},
doi = {10.1093/BIOINFORMATICS/BTY760},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlechnovicMKV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlivaPLBGG19,
author = {Adrien Oliva and
Sylvain Pulicani and
Vincent Lefort and
Laurent Br{\'{e}}h{\'{e}}lin and
Olivier Gascuel and
St{\'{e}}phane Guindon},
title = {Accounting for ambiguity in ancestral sequence reconstruction},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4290--4297},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz249},
doi = {10.1093/BIOINFORMATICS/BTZ249},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlivaPLBGG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlsenMTJ19,
author = {Lars Olsen and
Marco Montefiori and
Khanhvi Phuc Tran and
Flemming Steen J{\o}rgensen},
title = {SMARTCyp 3.0: enhanced cytochrome {P450} site-of-metabolism prediction
server},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3174--3175},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz037},
doi = {10.1093/BIOINFORMATICS/BTZ037},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlsenMTJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlsonSKWPB19,
author = {Nathan D. Olson and
Nidhi Shah and
Jayaram Kancherla and
Justin Wagner and
Joseph N. Paulson and
H{\'{e}}ctor Corrada Bravo},
title = {metagenomeFeatures: an {R} package for working with 16S rRNA reference
databases and marker-gene survey feature data},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3870--3872},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz136},
doi = {10.1093/BIOINFORMATICS/BTZ136},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlsonSKWPB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OnateCACGMEP19,
author = {Florian Plaza O{\~{n}}ate and
Emmanuelle Le Chatelier and
Mathieu Almeida and
Alessandra C. L. Cervino and
Franck Gauthier and
Fr{\'{e}}d{\'{e}}ric Magoul{\`{e}}s and
S. Dusko Ehrlich and
Matthieu Pichaud},
title = {MSPminer: abundance-based reconstitution of microbial pan-genomes
from shotgun metagenomic data},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1544--1552},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty830},
doi = {10.1093/BIOINFORMATICS/BTY830},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OnateCACGMEP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrabiEMVBBCCH19,
author = {Baraa Orabi and
Emre Erhan and
Brian McConeghy and
Stanislav V. Volik and
Stephane Le Bihan and
Robert Bell and
Colin C. Collins and
C{\'{e}}dric Chauve and
Faraz Hach},
title = {Alignment-free clustering of {UMI} tagged {DNA} molecules},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1829--1836},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty888},
doi = {10.1093/BIOINFORMATICS/BTY888},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrabiEMVBBCCH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrellanaGBYL19,
author = {Laura Orellana and
Johan Gustavsson and
Cathrine Bergh and
Ozge Yoluk and
Erik Lindahl},
title = {eBDIMS server: protein transition pathways with ensemble analysis
in 2D-motion spaces},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3505--3507},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz104},
doi = {10.1093/BIOINFORMATICS/BTZ104},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrellanaGBYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrlandoRTCMV19,
author = {Gabriele Orlando and
Daniele Raimondi and
Francesco Tabaro and
Francesco Codic{\`{e}} and
Yves Moreau and
Wim F. Vranken},
title = {Computational identification of prion-like RNA-binding proteins that
form liquid phase-separated condensates},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4617--4623},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz274},
doi = {10.1093/BIOINFORMATICS/BTZ274},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrlandoRTCMV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrzechowskiM19,
author = {Patryk Orzechowski and
Jason H. Moore},
title = {{EBIC:} an open source software for high-dimensional and big data
analyses},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3181--3183},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz027},
doi = {10.1093/BIOINFORMATICS/BTZ027},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrzechowskiM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OssioGAGAAR19,
author = {Raul Ossio and
O. Isaac Garcia{-}Salinas and
Diego Said Anaya{-}Mancilla and
Jair S. Garc{\'{\i}}a{-}Sotelo and
Luis A. Aguilar and
David J. Adams and
Carla Daniela Robles{-}Espinoza},
title = {VCF/Plotein: visualization and prioritization of genomic variants
from human exome sequencing projects},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4803--4805},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz458},
doi = {10.1093/BIOINFORMATICS/BTZ458},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OssioGAGAAR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PagesCG19,
author = {Guillaume Pag{\`{e}}s and
Benoit Charmettant and
Sergei Grudinin},
title = {Protein model quality assessment using 3D oriented convolutional neural
networks},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3313--3319},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz122},
doi = {10.1093/BIOINFORMATICS/BTZ122},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PagesCG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PagesG19,
author = {Guillaume Pag{\`{e}}s and
Sergei Grudinin},
title = {DeepSymmetry: using 3D convolutional networks for identification of
tandem repeats and internal symmetries in protein structures},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5113--5120},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz454},
doi = {10.1093/BIOINFORMATICS/BTZ454},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PagesG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalmbladLIS19,
author = {Magnus Palmblad and
Anna{-}Lena Lamprecht and
Jon C. Ison and
Veit Schw{\"{a}}mmle},
title = {Automated workflow composition in mass spectrometry-based proteomics},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {656--664},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty646},
doi = {10.1093/BIOINFORMATICS/BTY646},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalmbladLIS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanJG19,
author = {Xiaoyong Pan and
Lars Juhl Jensen and
Jan Gorodkin},
title = {Inferring disease-associated long non-coding RNAs using genome-wide
tissue expression profiles},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1494--1502},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty859},
doi = {10.1093/BIOINFORMATICS/BTY859},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanJG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanL19,
author = {Weihua Pan and
Stefano Lonardi},
title = {Accurate detection of chimeric contigs via Bionano optical maps},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1760--1762},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty850},
doi = {10.1093/BIOINFORMATICS/BTY850},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PantazisT19,
author = {Yannis Pantazis and
Ioannis Tsamardinos},
title = {A unified approach for sparse dynamical system inference from temporal
measurements},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3387--3396},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz065},
doi = {10.1093/BIOINFORMATICS/BTZ065},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PantazisT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapadopoulosPS19,
author = {Nikolaos Papadopoulos and
R. Gonzalo Parra and
Johannes S{\"{o}}ding},
title = {{PROSSTT:} probabilistic simulation of single-cell RNA-seq data for
complex differentiation processes},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3517--3519},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz078},
doi = {10.1093/BIOINFORMATICS/BTZ078},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapadopoulosPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapiezMPP19,
author = {Anna Papiez and
Michal Marczyk and
Joanna Polanska and
Andrzej Polanski},
title = {BatchI: Batch effect Identification in high-throughput screening data
using a dynamic programming algorithm},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1885--1892},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty900},
doi = {10.1093/BIOINFORMATICS/BTY900},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapiezMPP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParadisS19,
author = {Emmanuel Paradis and
Klaus Schliep},
title = {ape 5.0: an environment for modern phylogenetics and evolutionary
analyses in {R}},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {526--528},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty633},
doi = {10.1093/BIOINFORMATICS/BTY633},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParadisS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParcaACPTPAH19,
author = {Luca Parca and
Bruno Ariano and
Andrea Cabibbo and
Marco Paoletti and
Annalaura Tamburrini and
Antonio Palmeri and
Gabriele Ausiello and
Manuela Helmer{-}Citterich},
title = {Kinome-wide identification of phosphorylation networks in eukaryotic
proteomes},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {372--379},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty545},
doi = {10.1093/BIOINFORMATICS/BTY545},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParcaACPTPAH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PartonMCOW19,
author = {Andrew Parton and
Victoria McGilligan and
Melody Chemaly and
Maurice O'Kane and
Steven Watterson},
title = {New models of atherosclerosis and multi-drug therapeutic interventions},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2449--2457},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty980},
doi = {10.1093/BIOINFORMATICS/BTY980},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PartonMCOW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParvandehM19,
author = {Saeid Parvandeh and
Brett A. McKinney},
title = {EpistasisRank and EpistasisKatz: interaction network centrality methods
that integrate prior knowledge networks},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2329--2331},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty965},
doi = {10.1093/BIOINFORMATICS/BTY965},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParvandehM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PattersonYKC19,
author = {Nathan Heath Patterson and
Ethan Yang and
Elizabeth{-}Ann Kranjec and
Pierre Chaurand},
title = {Co-registration and analysis of multiple imaging mass spectrometry
datasets targeting different analytes},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1261--1262},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty780},
doi = {10.1093/BIOINFORMATICS/BTY780},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PattersonYKC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PayneHRL19,
author = {Alexander Payne and
Nadine Holmes and
Vardhman K. Rakyan and
Matthew Loose},
title = {BulkVis: a graphical viewer for Oxford nanopore bulk {FAST5} files},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2193--2198},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty841},
doi = {10.1093/BIOINFORMATICS/BTY841},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PayneHRL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PearsonMEVRSEC19,
author = {Neil Pearson and
Karim Malki and
David Evans and
Lewis Vidler and
Cara Ruble and
James Scherschel and
Brian Eastwood and
David A. Collier},
title = {TractaViewer: a genome-wide tool for preliminary assessment of therapeutic
target druggability},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4509--4510},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz270},
doi = {10.1093/BIOINFORMATICS/BTZ270},
timestamp = {Mon, 24 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PearsonMEVRSEC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeiDZJ19,
author = {Guangsheng Pei and
Yulin Dai and
Zhongming Zhao and
Peilin Jia},
title = {deTS: tissue-specific enrichment analysis to decode tissue specificity},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3842--3845},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz138},
doi = {10.1093/BIOINFORMATICS/BTZ138},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeiDZJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengHLCHJSW19,
author = {Jiajie Peng and
Weiwei Hui and
Qianqian Li and
Bolin Chen and
Jianye Hao and
Qinghua Jiang and
Xuequn Shang and
Zhongyu Wei},
title = {A learning-based framework for miRNA-disease association identification
using neural networks},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4364--4371},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz254},
doi = {10.1093/BIOINFORMATICS/BTZ254},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengHLCHJSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengLCRBCM19,
author = {Bo Peng and
Man Chong Leong and
Huann{-}Sheng Chen and
Melissa Rotunno and
Katy R. Brignole and
John Clarke and
Leah E. Mechanic},
title = {Genetic Simulation Resources and the {GSR} Certification Program},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {709--710},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty666},
doi = {10.1093/BIOINFORMATICS/BTY666},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengLCRBCM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengWTLNWZ19,
author = {Gang Peng and
Rashaun Wilson and
Yishuo Tang and
TuKiet T. Lam and
Angus C. Nairn and
Kenneth R. Williams and
Hongyu Zhao},
title = {ProteomicsBrowser: MS/proteomics data visualization and investigation},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2313--2314},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty958},
doi = {10.1093/BIOINFORMATICS/BTY958},
timestamp = {Thu, 22 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengWTLNWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengellyC19,
author = {Reuben J. Pengelly and
Andrew Collins},
title = {Linkage disequilibrium maps to guide contig ordering for genome assembly},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {541--545},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty687},
doi = {10.1093/BIOINFORMATICS/BTY687},
timestamp = {Mon, 16 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengellyC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Perales-PatonDT19,
author = {Javier Perales{-}Pat{\'{o}}n and
Tom{\'{a}}s Di Domenico and
Coral Fustero Torre and
Elena Pi{\~{n}}eiro{-}Y{\'{a}}{\~{n}}ez and
Carlos Carretero{-}Puche and
H{\'{e}}ctor Tejero and
Alfonso Valencia and
Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and
F{\'{a}}tima Al{-}Shahrour},
title = {vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4846--4848},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz465},
doi = {10.1093/BIOINFORMATICS/BTZ465},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Perales-PatonDT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PereiraLGCT19,
author = {Adrien Leite Pereira and
Olivier Lambotte and
Roger Le Grand and
Antonio Cosma and
Nicolas Tchitchek},
title = {CytoBackBone: an algorithm for merging of phenotypic information from
different cytometric profiles},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4187--4189},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz212},
doi = {10.1093/BIOINFORMATICS/BTZ212},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PereiraLGCT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeresGPY19,
author = {Ayelet Peres and
Moriah Gidoni and
Pazit Polak and
Gur Yaari},
title = {RAbHIT: {R} Antibody Haplotype Inference Tool},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4840--4842},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz481},
doi = {10.1093/BIOINFORMATICS/BTZ481},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeresGPY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerfettoABCdFHK19,
author = {Livia Perfetto and
Marcio Luis Acencio and
Glyn Bradley and
Gianni Cesareni and
Noemi del{-}Toro and
D{\'{a}}vid Fazekas and
Henning Hermjakob and
Tam{\'{a}}s Korcsm{\'{a}}ros and
Martin Kuiper and
Astrid L{\ae}greid and
Prisca Lo Surdo and
Ruth C. Lovering and
Sandra E. Orchard and
Pablo Porras and
Paul D. Thomas and
Vasundra Tour{\'{e}} and
John Zobolas and
Luana Licata},
title = {CausalTAB: the {PSI-MITAB} 2.8 updated format for signalling data
representation and dissemination},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3779--3785},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz132},
doi = {10.1093/BIOINFORMATICS/BTZ132},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PerfettoABCdFHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetersFBPSVNQSG19,
author = {Timothy J. Peters and
Hugh J. French and
Stephen T. Bradford and
Ruth Pidsley and
Clare Stirzaker and
Hilal Varinli and
Shalima Nair and
Wenjia Qu and
Jenny Song and
Katherine A. Giles and
Aaron L. Statham and
Helen Speirs and
Terence P. Speed and
Susan J. Clark},
title = {Evaluation of cross-platform and interlaboratory concordance via consensus
modelling of genomic measurements},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {560--570},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty675},
doi = {10.1093/BIOINFORMATICS/BTY675},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetersFBPSVNQSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetrVK19,
author = {Martin Petr and
Benjamin Vernot and
Janet Kelso},
title = {admixr - {R} package for reproducible analyses using {ADMIXTOOLS}},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3194--3195},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz030},
doi = {10.1093/BIOINFORMATICS/BTZ030},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetrVK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhanPMRDM19,
author = {Vinhthuy Phan and
Diem{-}Trang Pham and
Caroline Melton and
Adam J. Ramsey and
Bernie J. Daigle Jr. and
Jennifer R. Mandel},
title = {icHET: interactive visualization of cytoplasmic heteroplasmy},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4411--4412},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz300},
doi = {10.1093/BIOINFORMATICS/BTZ300},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhanPMRDM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhillipsSTPSMKY19,
author = {Jason R. Phillips and
Daniel L. Svoboda and
Arpit Tandon and
Shyam Patel and
Alex Sedykh and
Deepak Mav and
Byron Kuo and
Carole L. Yauk and
Longlong Yang and
Russell S. Thomas and
Jeff S. Gift and
J. Allen Davis and
Louis Olszyk and
B. Alex Merrick and
Richard S. Paules and
Fred Parham and
Trey Saddler and
Ruchir R. Shah and
Scott S. Auerbach},
title = {BMDExpress 2: enhanced transcriptomic dose-response analysis workflow},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1780--1782},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty878},
doi = {10.1093/BIOINFORMATICS/BTY878},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhillipsSTPSMKY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PilizotaTARD19,
author = {Ivana Pilizota and
Cl{\'{e}}ment{-}Marie Train and
Adrian M. Altenhoff and
Henning Redestig and
Christophe Dessimoz},
title = {Phylogenetic approaches to identifying fragments of the same gene,
with application to the wheat genome},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1159--1166},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty772},
doi = {10.1093/BIOINFORMATICS/BTY772},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PilizotaTARD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirogovPBH19,
author = {Anton Pirogov and
Peter Pfaffelhuber and
Angelika B{\"{o}}rsch{-}Haubold and
Bernhard Haubold},
title = {High-complexity regions in mammalian genomes are enriched for developmental
genes},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1813--1819},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty922},
doi = {10.1093/BIOINFORMATICS/BTY922},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirogovPBH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PividoriCHCSM19,
author = {Milton Pividori and
Andres Cernadas and
Luis A. de Haro and
Fernando Carrari and
Georgina Stegmayer and
Diego H. Milone},
title = {Clustermatch: discovering hidden relations in highly diverse kinds
of qualitative and quantitative data without standardization},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1931--1939},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty899},
doi = {10.1093/BIOINFORMATICS/BTY899},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PividoriCHCSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PividoriI19,
author = {Milton Pividori and
Hae Kyung Im},
title = {ukbREST: efficient and streamlined data access for reproducible research
in large biobanks},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1971--1973},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty925},
doi = {10.1093/BIOINFORMATICS/BTY925},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PividoriI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlantingaCJW19,
author = {Anna M. Plantinga and
Jun Chen and
Robert R. Jenq and
Michael C. Wu},
title = {pldist: ecological dissimilarities for paired and longitudinal microbiome
association analysis},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3567--3575},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz120},
doi = {10.1093/BIOINFORMATICS/BTZ120},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PlantingaCJW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PodpecanRGTL19,
author = {Vid Podpecan and
Ziva Ramsak and
Kristina Gruden and
Hannu Toivonen and
Nada Lavrac},
title = {Interactive exploration of heterogeneous biological networks with
Biomine Explorer},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5385--5388},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz509},
doi = {10.1093/BIOINFORMATICS/BTZ509},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PodpecanRGTL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoellMSBBY19,
author = {Jos B. Poell and
Matias Mendeville and
Daoud Sie and
Arjen Brink and
Ruud H. Brakenhoff and
Bauke Ylstra},
title = {{ACE:} absolute copy number estimation from low-coverage whole-genome
sequencing data},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2847--2849},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1055},
doi = {10.1093/BIOINFORMATICS/BTY1055},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PoellMSBBY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Popitsch19,
author = {Niko Popitsch},
title = {{VARAN-GIE:} curation of genomic interval sets},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {868--870},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty723},
doi = {10.1093/BIOINFORMATICS/BTY723},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Popitsch19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PouletLDRGQ19,
author = {Axel Poulet and
Ben Li and
Tristan Dubos and
Juan Carlos Rivera{-}Mulia and
David M. Gilbert and
Zhaohui S. Qin},
title = {{RT} States: systematic annotation of the human genome using cell
type-specific replication timing programs},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2167--2176},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty957},
doi = {10.1093/BIOINFORMATICS/BTY957},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PouletLDRGQ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Puente-Santamaria19,
author = {Laura Puente{-}Santamaria and
Wyeth W. Wasserman and
Luis del Peso},
title = {TFEA.ChIP: a tool kit for transcription factor binding site enrichment
analysis capitalizing on ChIP-seq datasets},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5339--5340},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz573},
doi = {10.1093/BIOINFORMATICS/BTZ573},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Puente-Santamaria19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Puttick19,
author = {Mark N. Puttick},
title = {MCMCtreeR: functions to prepare MCMCtree analyses and visualize posterior
ages on trees},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5321--5322},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz554},
doi = {10.1093/BIOINFORMATICS/BTZ554},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Puttick19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PyysaloBAHSYGHS19,
author = {Sampo Pyysalo and
Simon Baker and
Imran Ali and
Stefan Haselwimmer and
Tejas Shah and
Andrew Young and
Yufan Guo and
Johan H{\"{o}}gberg and
Ulla Stenius and
Masashi Narita and
Anna Korhonen},
title = {{LION} {LBD:} a literature-based discovery system for cancer biology},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1553--1561},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty845},
doi = {10.1093/BIOINFORMATICS/BTY845},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PyysaloBAHSYGHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QamarZXC19,
author = {Muhammad Tahir Ul Qamar and
Xitong Zhu and
Feng Xing and
Ling{-}Ling Chen},
title = {ppsPCP: a plant presence/absence variants scanner and pan-genome construction
pipeline},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4156--4158},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz168},
doi = {10.1093/BIOINFORMATICS/BTZ168},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QamarZXC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuickFTABK19,
author = {Corbin Quick and
Christian Fuchsberger and
Daniel Taliun and
Gon{\c{c}}alo R. Abecasis and
Michael Boehnke and
Hyun Min Kang},
title = {emeraLD: rapid linkage disequilibrium estimation with massive datasets},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {164--166},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty547},
doi = {10.1093/BIOINFORMATICS/BTY547},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuickFTABK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuijadaREH19,
author = {Narciso M. Quijada and
David Rodr{\'{\i}}guez{-}L{\'{a}}zaro and
Jose Mar{\'{\i}}a Eiros and
Marta Hern{\'{a}}ndez},
title = {{TORMES:} an automated pipeline for whole bacterial genome analysis},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4207--4212},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz220},
doi = {10.1093/BIOINFORMATICS/BTZ220},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuijadaREH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RabarZRRG19,
author = {Braslav Rabar and
Maja Zagorscak and
Strahil Ristov and
Martin Rosenzweig and
Pavle Goldstein},
title = {{IGLOSS:} iterative gapless local similarity search},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3491--3492},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz086},
doi = {10.1093/BIOINFORMATICS/BTZ086},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RabarZRRG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RadchenkoFMZ19,
author = {Tatiana Radchenko and
Fabien Fontaine and
Luca Morettoni and
Ismael Zamora},
title = {WebMetabase: cleavage sites analysis tool for natural and unnatural
substrates from diverse data source},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {650--655},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty667},
doi = {10.1093/BIOINFORMATICS/BTY667},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RadchenkoFMZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RainerGW19,
author = {Johannes Rainer and
Laurent Gatto and
Christian X. Weichenberger},
title = {ensembldb: an {R} package to create and use Ensembl-based annotation
resources},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3151--3153},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz031},
doi = {10.1093/BIOINFORMATICS/BTZ031},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RainerGW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RajuSG19,
author = {Nagarajan Raju and
Ian Setliff and
Ivelin S. Georgiev},
title = {NFPws: a web server for delineating broadly neutralizing antibody
specificities from serum {HIV-1} neutralization data},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3502--3504},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz097},
doi = {10.1093/BIOINFORMATICS/BTZ097},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RajuSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakrishnanHRS19,
author = {Reshmi Ramakrishnan and
Bert Houben and
Frederic Rousseau and
Joost Schymkowitz},
title = {Differential proteostatic regulation of insoluble and abundant proteins},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4098--4107},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz214},
doi = {10.1093/BIOINFORMATICS/BTZ214},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamakrishnanHRS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamaniKHS19,
author = {Ritika Ramani and
Katie Krumholz and
Yi{-}Fei Huang and
Adam Siepel},
title = {PhastWeb: a web interface for evolutionary conservation scoring of
multiple sequence alignments using phastCons and phyloP},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2320--2322},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty966},
doi = {10.1093/BIOINFORMATICS/BTY966},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamaniKHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RampasekHSHG19,
author = {Ladislav Ramp{\'{a}}sek and
Daniel Hidru and
Petr Smirnov and
Benjamin Haibe{-}Kains and
Anna Goldenberg},
title = {Dr.VAE: improving drug response prediction via modeling of drug perturbation
effects},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3743--3751},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz158},
doi = {10.1093/BIOINFORMATICS/BTZ158},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RampasekHSHG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RappoportS19,
author = {Nimrod Rappoport and
Ron Shamir},
title = {{NEMO:} cancer subtyping by integration of partial multi-omic data},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3348--3356},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz058},
doi = {10.1093/BIOINFORMATICS/BTZ058},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RappoportS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RauFRA19,
author = {Andrea Rau and
Michael Flister and
Hallgeir Rui and
Paul L. Auer},
title = {Exploring drivers of gene expression in the Cancer Genome Atlas},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {62--68},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty551},
doi = {10.1093/BIOINFORMATICS/BTY551},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RauFRA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RauschFKB19,
author = {Tobias Rausch and
Markus Hsi{-}Yang Fritz and
Jan O. Korbel and
Vladimir Benes},
title = {Alfred: interactive multi-sample {BAM} alignment statistics, feature
counting and feature annotation for long- and short-read sequencing},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2489--2491},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1007},
doi = {10.1093/BIOINFORMATICS/BTY1007},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RauschFKB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RautiainenMM19,
author = {Mikko Rautiainen and
Veli M{\"{a}}kinen and
Tobias Marschall},
title = {Bit-parallel sequence-to-graph alignment},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3599--3607},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz162},
doi = {10.1093/BIOINFORMATICS/BTZ162},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RautiainenMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RayGFBTGC19,
author = {Shayoni Ray and
Samrawit Gebre and
Homer Fogle and
Daniel C. Berrios and
Peter B. Tran and
Jonathan M. Galazka and
Sylvain V. Costes},
title = {GeneLab: Omics database for spaceflight experiments},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1753--1759},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty884},
doi = {10.1093/BIOINFORMATICS/BTY884},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RayGFBTGC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaynalMPRRE19,
author = {Louis Raynal and
Jean{-}Michel Marin and
Pierre Pudlo and
Mathieu Ribatet and
Christian P. Robert and
Arnaud Estoup},
title = {{ABC} random forests for Bayesian parameter inference},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1720--1728},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty867},
doi = {10.1093/BIOINFORMATICS/BTY867},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaynalMPRRE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReisleMCPBMMMSC19,
author = {Caralyn Reisle and
Karen L. Mungall and
Caleb Choo and
Daniel Paulino and
Dustin W. Bleile and
Amir Muhammadzadeh and
Andrew J. Mungall and
Richard A. Moore and
Inna Shlafman and
Robin Coope and
Stephen Pleasance and
Yussanne Ma and
Steven J. M. Jones},
title = {{MAVIS:} merging, annotation, validation, and illustration of structural
variants},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {515--517},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty621},
doi = {10.1093/BIOINFORMATICS/BTY621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReisleMCPBMMMSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RenK19,
author = {Xu Ren and
Pei Fen Kuan},
title = {methylGSA: a Bioconductor package and Shiny app for {DNA} methylation
data length bias adjustment in gene set testing},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1958--1959},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty892},
doi = {10.1093/BIOINFORMATICS/BTY892},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RenK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReyVBS19,
author = {Carine Rey and
Philippe Veber and
Bastien Boussau and
Marie S{\'{e}}mon},
title = {{CAARS:} comparative assembly and annotation of RNA-Seq data},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2199--2207},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty903},
doi = {10.1093/BIOINFORMATICS/BTY903},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReyVBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RibeiroRMS19,
author = {Judemir Ribeiro and
Carlos R{\'{\i}}os{-}Vera and
Francisco Melo and
Andreas Sch{\"{u}}ller},
title = {Calculation of accurate interatomic contact surface areas for the
quantitative analysis of non-bonded molecular interactions},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3499--3501},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz062},
doi = {10.1093/BIOINFORMATICS/BTZ062},
timestamp = {Mon, 11 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RibeiroRMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RichterHMPSMMDG19,
author = {Felix Richter and
Gabriel E. Hoffman and
K. B. Manheimer and
Nihir Patel and
A J. Sharp and
D. McKean and
S. U. Morton and
S. DePalma and
J. Gorham and
A Kitaygorodksy and
Jr G. A Porter and
A Giardini and
Y. Shen and
Wendy K. Chung and
J. G. Seidman and
C. E. Seidman and
Eric E. Schadt and
Bruce D. Gelb},
title = {{ORE} identifies extreme expression effects enriched for rare variants},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3906--3912},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz202},
doi = {10.1093/BIOINFORMATICS/BTZ202},
timestamp = {Sun, 08 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RichterHMPSMMDG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RichterMR19,
author = {Jakob Richter and
Katrin Madjar and
J{\"{o}}rg Rahnenf{\"{u}}hrer},
title = {Model-based optimization of subgroup weights for survival analysis},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i484--i491},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz361},
doi = {10.1093/BIOINFORMATICS/BTZ361},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RichterMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RivaultDM19,
author = {Yann Rivault and
Olivier Dameron and
Nolwenn Le Meur},
title = {queryMed: Semantic Web functions for linking pharmacological and medical
knowledge to data},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3203--3205},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz034},
doi = {10.1093/BIOINFORMATICS/BTZ034},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RivaultDM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RizviKMPWSHS19,
author = {Abbas A. Rizvi and
Ezgi Karaesmen and
Martin Morgan and
Leah Preus and
Junke Wang and
Michael Sovic and
Theresa Hahn and
Lara E. Sucheston{-}Campbell},
title = {gwasurvivr: an {R} package for genome-wide survival analysis},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1968--1970},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty920},
doi = {10.1093/BIOINFORMATICS/BTY920},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RizviKMPWSHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobertsonWJK19,
author = {David S. Robertson and
Jan Wildenhain and
Adel Javanmard and
Natasha A. Karp},
title = {onlineFDR: an {R} package to control the false discovery rate for
growing data repositories},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4196--4199},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz191},
doi = {10.1093/BIOINFORMATICS/BTZ191},
timestamp = {Tue, 13 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobertsonWJK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobinsonSL19,
author = {Welles Robinson and
Roded Sharan and
Mark D. M. Leiserson},
title = {Modeling clinical and molecular covariates of mutational process activity
in cancer},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i492--i500},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz340},
doi = {10.1093/BIOINFORMATICS/BTZ340},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobinsonSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rodriguez-Martinez19,
author = {Andrea Rodriguez{-}Martinez and
Rafael Ayala and
Joram M. Posma and
Nikita Harvey and
Beatriz Jim{\'{e}}nez and
Kazuhiro Sonomura and
Taka{-}Aki Sato and
Fumihiko Matsuda and
Pierre A. Zalloua and
Dominique Gauguier and
Jeremy K. Nicholson and
Marc{-}Emmanuel Dumas},
title = {pJRES Binning Algorithm {(JBA):} a new method to facilitate the recovery
of metabolic information from pJRES 1H {NMR} spectra},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1916--1922},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty837},
doi = {10.1093/BIOINFORMATICS/BTY837},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rodriguez-Martinez19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RohlRB19,
author = {Annika R{\"{o}}hl and
Tanguy Riou and
Alexander Bockmayr},
title = {Computing irreversible minimal cut sets in genome-scale metabolic
networks via flux cone projection},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2618--2625},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1027},
doi = {10.1093/BIOINFORMATICS/BTY1027},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RohlRB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RonzanoGF19,
author = {Francesco Ronzano and
Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
Laura I. Furlong},
title = {Comorbidity4j: a tool for interactive analysis of disease comorbidities
over large patient datasets},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3530--3532},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz061},
doi = {10.1093/BIOINFORMATICS/BTZ061},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RonzanoGF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoossienSYWMDBM19,
author = {Douglas H. Roossien and
Benjamin V. Sadis and
Yan Yan and
John M. Webb and
Lia Y. Min and
Aslan S. Dizaji and
Luke J. Bogart and
Cristina Mazuski and
Robert S. Huth and
Johanna S. Stecher and
Sriakhila Akula and
Fred Y. Shen and
Ye Li and
Tingxin Xiao and
Madeleine Vandenbrink and
Jeff W. Lichtman and
Takao K. Hensch and
Erik D. Herzog and
Dawen Cai},
title = {Multispectral tracing in densely labeled mouse brain with nTracer},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3544--3546},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz084},
doi = {10.1093/BIOINFORMATICS/BTZ084},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoossienSYWMDBM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosCCTRSNVWMJG19,
author = {Xavier Bofill{-}De Ros and
Kevin Chen and
Susanna Chen and
Nikola Tesic and
Dusan Randjelovic and
Nikola Skundric and
Svetozar Nesic and
Vojislav Varjacic and
Elizabeth H. Williams and
Raunaq Malhotra and
Minjie Jiang and
Shuo Gu},
title = {QuagmiR: a cloud-based application for isomiR big data analytics},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1576--1578},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty843},
doi = {10.1093/BIOINFORMATICS/BTY843},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RosCCTRSNVWMJG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoseGSTP19,
author = {Rebecca Rose and
Olga Golosova and
Dmitrii Sukhomlinov and
Aleksey Tiunov and
Mattia Prosperi},
title = {Flexible design of multiple metagenomics classification pipelines
with {UGENE}},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1963--1965},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty901},
doi = {10.1093/BIOINFORMATICS/BTY901},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoseGSTP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rougny19,
author = {Adrien Rougny},
title = {sbgntikz - a TikZ library to draw {SBGN} maps},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4499--4500},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz287},
doi = {10.1093/BIOINFORMATICS/BTZ287},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rougny19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuSKTZ19,
author = {Beibei Ru and
Jianlong Sun and
Qingzheng Kang and
Yin Tong and
Jiangwen Zhang},
title = {A framework for identifying dysregulated chromatin regulators as master
regulators in human cancer},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1805--1812},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty836},
doi = {10.1093/BIOINFORMATICS/BTY836},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuSKTZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuTZ19,
author = {Beibei Ru and
Yin Tong and
Jiangwen Zhang},
title = {MR4Cancer: a web server prioritizing master regulators for cancer},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {636--642},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty658},
doi = {10.1093/BIOINFORMATICS/BTY658},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuTZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuWTZZWCWLCCZ19,
author = {Beibei Ru and
Ching Ngar Wong and
Yin Tong and
Jia Yi Zhong and
Sophia Shek Wa Zhong and
Wai Chung Wu and
Ka Chi Chu and
Choi Yiu Wong and
Chit Ying Lau and
Ian Chen and
Nam Wai Chan and
Jiangwen Zhang},
title = {{TISIDB:} an integrated repository portal for tumor-immune system
interactions},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4200--4202},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz210},
doi = {10.1093/BIOINFORMATICS/BTZ210},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuWTZZWCWLCCZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuanM19,
author = {Xiongtao Ruan and
Robert F. Murphy},
title = {Evaluation of methods for generative modeling of cell and nuclear
shape},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2475--2485},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty983},
doi = {10.1093/BIOINFORMATICS/BTY983},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuanM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuanWSW19,
author = {Peifeng Ruan and
Ya Wang and
Ronglai Shen and
Shuang Wang},
title = {Using association signal annotations to boost similarity network fusion},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3718--3726},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz124},
doi = {10.1093/BIOINFORMATICS/BTZ124},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuanWSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaberianPDAD19,
author = {Nafiseh Saberian and
Azam Peyvandi{-}Pour and
Michele Donato and
Sahar Ansari and
Sorin Draghici},
title = {A new computational drug repurposing method using established disease-drug
pair knowledge},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3672--3678},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz156},
doi = {10.1093/BIOINFORMATICS/BTZ156},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaberianPDAD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaethangHYZKKP19,
author = {Thammakorn Saethang and
Kenneth Hodge and
Chin{-}Rang Yang and
Yue Zhao and
Ingorn Kimkong and
Mark A. Knepper and
Trairak Pisitkun},
title = {PTM-Logo: a program for generation of sequence logos based on position-specific
background amino-acid probabilities},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5313--5314},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz568},
doi = {10.1093/BIOINFORMATICS/BTZ568},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaethangHYZKKP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahaJPWR19,
author = {Subrata Saha and
Jethro Johnson and
Soumitra Pal and
George M. Weinstock and
Sanguthevar Rajasekaran},
title = {{MSC:} a metagenomic sequence classification algorithm},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2932--2940},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1071},
doi = {10.1093/BIOINFORMATICS/BTY1071},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahaJPWR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakaueO19,
author = {Saori Sakaue and
Yukinori Okada},
title = {{GREP:} genome for REPositioning drugs},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3821--3823},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz166},
doi = {10.1093/BIOINFORMATICS/BTZ166},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakaueO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalesCR19,
author = {Gabriele Sales and
Enrica Calura and
Chiara Romualdi},
title = {metaGraphite-a new layer of pathway annotation to get metabolite networks},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1258--1260},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty719},
doi = {10.1093/BIOINFORMATICS/BTY719},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalesCR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalvyFAPSH19,
author = {Pierre Salvy and
Georgios Fengos and
Meri{\c{c}} Ataman and
Thomas Pathier and
Keng C. Soh and
Vassily Hatzimanikatis},
title = {pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based
Flux Analysis},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {167--169},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty499},
doi = {10.1093/BIOINFORMATICS/BTY499},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalvyFAPSH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SampaioROD19,
author = {Marta Sampaio and
Miguel Rocha and
Hugo Oliveira and
Oscar D{\'{\i}}as},
title = {Predicting promoters in phage genomes using PhagePromoter},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5301--5302},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz580},
doi = {10.1093/BIOINFORMATICS/BTZ580},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SampaioROD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SandsWCSAJLGNP19,
author = {Caroline J. Sands and
Arnaud M. Wolfer and
Gon{\c{c}}alo D. S. Correia and
Noureddin Sadawi and
Arfan Ahmed and
Beatriz Jim{\'{e}}nez and
Matthew R. Lewis and
Robert C. Glen and
Jeremy K. Nicholson and
Jake T. M. Pearce},
title = {The nPYc-Toolbox, a Python module for the pre-processing, quality-control
and analysis of metabolic profiling datasets},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5359--5360},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz566},
doi = {10.1093/BIOINFORMATICS/BTZ566},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SandsWCSAJLGNP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SantamariaTDHGS19,
author = {Rodrigo Santamar{\'{\i}}a and
Roberto Ther{\'{o}}n and
Laura Dur{\'{a}}n and
Alicia Garc{\'{\i}}a{-}Holgado and
Sara Gonz{\'{a}}lez and
Mar S{\'{a}}nchez and
Francisco Antequera},
title = {Genome-wide search of nucleosome patterns using visual analytics},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2185--2192},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty971},
doi = {10.1093/BIOINFORMATICS/BTY971},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SantamariaTDHGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SanyalLKDAJC19,
author = {Nilotpal Sanyal and
Min{-}Tzu Lo and
Karolina Kauppi and
Srdjan Djurovic and
Ole A. Andreassen and
Valen E. Johnson and
Chi{-}Hua Chen},
title = {GWASinlps: non-local prior based iterative {SNP} selection tool for
genome-wide association studies},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {1--11},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty472},
doi = {10.1093/BIOINFORMATICS/BTY472},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SanyalLKDAJC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SarkarSP19,
author = {Hirak Sarkar and
Avi Srivastava and
Rob Patro},
title = {Minnow: a principled framework for rapid simulation of dscRNA-seq
data at the read level},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i136--i144},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz351},
doi = {10.1093/BIOINFORMATICS/BTZ351},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SarkarSP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SauerW19,
author = {David B. Sauer and
Da{-}Neng Wang},
title = {Predicting the optimal growth temperatures of prokaryotes using only
genome derived features},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3224--3231},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz059},
doi = {10.1093/BIOINFORMATICS/BTZ059},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SauerW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SayyariKM19,
author = {Erfan Sayyari and
Ban Kawas and
Siavash Mirarab},
title = {{TADA:} phylogenetic augmentation of microbiome samples enhances phenotype
classification},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i31--i40},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz394},
doi = {10.1093/BIOINFORMATICS/BTZ394},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SayyariKM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaeferCWS19,
author = {Moritz Schaefer and
Djork{-}Arn{\'{e}} Clevert and
Bertram Weiss and
Andreas Steffen},
title = {{PAVOOC:} designing {CRISPR} sgRNAs using 3D protein structures and
functional domain annotations},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2309--2310},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty935},
doi = {10.1093/BIOINFORMATICS/BTY935},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaeferCWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScheibleRGMEK19,
author = {Raphael Scheible and
Stephan Rusch and
David Guzman and
Nizar Mahlaoui and
Stephan Ehl and
Gerhard Kindle},
title = {The {NEW} {ESID} online database network},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5367--5369},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz525},
doi = {10.1093/BIOINFORMATICS/BTZ525},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScheibleRGMEK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtKEBS19,
author = {Florian Schmidt and
Fabian Kern and
Peter Ebert and
Nina Baumgarten and
Marcel H. Schulz},
title = {{TEPIC} 2 - an extended framework for transcription factor binding
prediction and integrative epigenomic analysis},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1608--1609},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty856},
doi = {10.1093/BIOINFORMATICS/BTY856},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtKEBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtS19,
author = {Florian Schmidt and
Marcel H. Schulz},
title = {On the problem of confounders in modeling gene expression},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {711--719},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty674},
doi = {10.1093/BIOINFORMATICS/BTY674},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchneiderK19,
author = {Philipp Schneider and
Steffen Klamt},
title = {Characterizing and ranking computed metabolic engineering strategies},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3063--3072},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1065},
doi = {10.1093/BIOINFORMATICS/BTY1065},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchneiderK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchneiderKTGBMS19,
author = {Lara Schneider and
Tim Kehl and
Kristina Thedinga and
Nadja Liddy Grammes and
Christina Backes and
Christopher Mohr and
Benjamin Schubert and
Kerstin Lenhof and
Nico Gerstner and
Andreas Daniel Hartkopf and
Markus Wallwiener and
Oliver Kohlbacher and
Andreas Keller and
Eckart Meese and
Norbert M. Graf and
Hans{-}Peter Lenhof},
title = {ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment
stratification},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5171--5181},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz302},
doi = {10.1093/BIOINFORMATICS/BTZ302},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchneiderKTGBMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Schubert19,
author = {Michael Schubert},
title = {clustermq enables efficient parallelization of genomic analyses},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4493--4495},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz284},
doi = {10.1093/BIOINFORMATICS/BTZ284},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Schubert19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchultheisKPWFB19,
author = {Hendrik Schultheis and
Carsten Kuenne and
Jens Preussner and
Rene Wiegandt and
Annika Fust and
Mette Bentsen and
Mario Looso},
title = {WIlsON: Web-based Interactive Omics VisualizatioN},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1055--1057},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty711},
doi = {10.1093/BIOINFORMATICS/BTY711},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchultheisKPWFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchwarzH19,
author = {Johanna Schwarz and
Dominik Heider},
title = {{GUESS:} projecting machine learning scores to well-calibrated probability
estimates for clinical decision-making},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2458--2465},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty984},
doi = {10.1093/BIOINFORMATICS/BTY984},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchwarzH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchweigerEC19,
author = {Regev Schweiger and
Yaniv Erlich and
Shai Carmi},
title = {FactorialHMM: fast and exact inference in factorial hidden Markov
models},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2162--2164},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty944},
doi = {10.1093/BIOINFORMATICS/BTY944},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchweigerEC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScottHWMGRWD19,
author = {Adam D. Scott and
Kuan{-}Lin Huang and
Amila Weerasinghe and
R. Jay Mashl and
Qingsong Gao and
Fernanda Martins Rodrigues and
Matthew A. Wyczalkowski and
Li Ding},
title = {CharGer: clinical Characterization of Germline variants},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {865--867},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty649},
doi = {10.1093/BIOINFORMATICS/BTY649},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScottHWMGRWD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SedgewickBSRRMZ19,
author = {Andrew J. Sedgewick and
Kristina Buschur and
Ivy Shi and
Joseph D. Ramsey and
Vineet K. Raghu and
Dimitris V. Manatakis and
Yingze Zhang and
Jessica Bon and
Divay Chandra and
Chad Karoleski and
Frank C. Sciurba and
Peter Spirtes and
Clark Glymour and
Panayiotis V. Benos},
title = {Mixed graphical models for integrative causal analysis with application
to chronic lung disease diagnosis and prognosis},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1204--1212},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty769},
doi = {10.1093/BIOINFORMATICS/BTY769},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SedgewickBSRRMZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeguraGSC19,
author = {Joan Segura and
Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and
Carlos Oscar S{\'{a}}nchez Sorzano and
Jos{\'{e}} Mar{\'{\i}}a Carazo},
title = {3DBIONOTES v3.0: crossing molecular and structural biology data with
genomic variations},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3512--3513},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz118},
doi = {10.1093/BIOINFORMATICS/BTZ118},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeguraGSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertGS19,
author = {Stephan Seifert and
Sven Gundlach and
Silke Szymczak},
title = {Surrogate minimal depth as an importance measure for variables in
random forests},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3663--3671},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz149},
doi = {10.1093/BIOINFORMATICS/BTZ149},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SelbyABSBBBCCCC19,
author = {Peter Selby and
Rafael Abbeloos and
Jan Erik Backlund and
Martin Basterrechea Salido and
Guillaume Bauchet and
Omar E. Benites{-}Alfaro and
Clayton L. Birkett and
Viana C. Calaminos and
Pierre Carceller and
Guillaume Cornut and
Bruno Vasques Costa and
Jeremy D. Edwards and
Richard Finkers and
Star Yanxin Gao and
Mehmood Ghaffar and
Philip Glaser and
Valentin Guignon and
Puthick Hok and
Andrzej Kilian and
Patrick K{\"{o}}nig and
Jack Elendil B. Lagare and
Matthias Lange and
Marie{-}Ang{\'{e}}lique Laporte and
Pierre Larmande and
David S. LeBauer and
David A Lyon and
David F. Marshall and
Dave Matthews and
Iain Milne and
Naymesh Mistry and
Nicolas Morales and
Lukas A. Mueller and
Pascal Neveu and
Evangelia Papoutsoglou and
Brian Pearce and
Ivan Perez{-}Masias and
Cyril Pommier and
Ricardo H. Ramirez{-}Gonzalez and
Abhishek Rathore and
Angel Manica Raquel and
Sebastian Raubach and
Trevor Rife and
Kelly Robbins and
Mathieu Rouard and
Chaitanya Sarma and
Uwe Scholz and
Guilhem Semp{\'{e}}r{\'{e}} and
Paul D. Shaw and
Reinhard Simon and
Nahuel Soldevilla and
Gordon Stephen and
Qi Sun and
Clarysabel Tovar and
Grzegorz Uszynski and
Maikel Verouden and
The BrAPI consortium},
title = {BrAPI - an application programming interface for plant breeding applications},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4147--4155},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz190},
doi = {10.1093/BIOINFORMATICS/BTZ190},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SelbyABSBBBCCCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SemeraroM19,
author = {Roberto Semeraro and
Alberto Magi},
title = {PyPore: a python toolbox for nanopore sequencing data handling},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4445--4447},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz269},
doi = {10.1093/BIOINFORMATICS/BTZ269},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SemeraroM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SenanANCNBYGS19,
author = {Oriol Senan and
Antoni Aguilar{-}Mogas and
Miriam Navarro and
Jordi Capellades and
Luke Noon and
Deborah Burks and
Oscar Yanes and
Roger Guimer{\`{a}} and
Marta Sales{-}Pardo},
title = {CliqueMS: a computational tool for annotating in-source metabolite
ions from {LC-MS} untargeted metabolomics data based on a coelution
similarity network},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4089--4097},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz207},
doi = {10.1093/BIOINFORMATICS/BTZ207},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SenanANCNBYGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SenapathiBBGN19,
author = {Tharindu Senapathi and
Simon Bray and
Christopher B. Barnett and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Kevin J. Naidoo},
title = {Biomolecular Reaction and Interaction Dynamics Global Environment
{(BRIDGE)}},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3508--3509},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz107},
doi = {10.1093/BIOINFORMATICS/BTZ107},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SenapathiBBGN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SergeantMTM19,
author = {Gwendolien Sergeant and
Lennart Martens and
Marleen Van Troys and
Paola Masuzzo},
title = {DoRes within CellMissy: dose-response analysis on cell migration and
related data},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {696--697},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty634},
doi = {10.1093/BIOINFORMATICS/BTY634},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SergeantMTM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SethnaECWM19,
author = {Zachary Sethna and
Yuval Elhanati and
Jr Curtis G. Callan and
Aleksandra M. Walczak and
Thierry Mora},
title = {{OLGA:} fast computation of generation probabilities of {B-} and T-cell
receptor amino acid sequences and motifs},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2974--2981},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz035},
doi = {10.1093/BIOINFORMATICS/BTZ035},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SethnaECWM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShaWZZ19,
author = {Qiuying Sha and
Zhenchuan Wang and
Xiao Zhang and
Shuanglin Zhang},
title = {A clustering linear combination approach to jointly analyze multiple
phenotypes for {GWAS}},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1373--1379},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty810},
doi = {10.1093/BIOINFORMATICS/BTY810},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShaWZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShafeeA19,
author = {Thomas Shafee and
Marilyn A. Anderson},
title = {A quantitative map of protein sequence space for the cis-defensin
superfamily},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {743--752},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty697},
doi = {10.1093/BIOINFORMATICS/BTY697},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShafeeA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahNWP19,
author = {Nidhi Shah and
Michael G. Nute and
Tandy J. Warnow and
Mihai Pop},
title = {Misunderstood parameter of {NCBI} {BLAST} impacts the correctness
of bioinformatics workflows},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1613--1614},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty833},
doi = {10.1093/BIOINFORMATICS/BTY833},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahNWP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShamsaniKAMPTOH19,
author = {Jannah Shamsani and
Stephen H. Kazakoff and
Irina M. Armean and
Will McLaren and
Michael T. Parsons and
Bryony A Thompson and
Tracy A. O'Mara and
Sarah E. Hunt and
Nicola Waddell and
Amanda B. Spurdle},
title = {A plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan
to predict variant spliceogenicity},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2315--2317},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty960},
doi = {10.1093/BIOINFORMATICS/BTY960},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShamsaniKAMPTOH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sharifi-Noghabi19,
author = {Hossein Sharifi{-}Noghabi and
Olga I. Zolotareva and
Colin C. Collins and
Martin Ester},
title = {{MOLI:} multi-omics late integration with deep neural networks for
drug response prediction},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i501--i509},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz318},
doi = {10.1093/BIOINFORMATICS/BTZ318},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sharifi-Noghabi19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShawCJ19,
author = {Dipan Shaw and
Hao Chen and
Tao Jiang},
title = {DeepIsoFun: a deep domain adaptation approach to predict isoform functions},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2535--2544},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1017},
doi = {10.1093/BIOINFORMATICS/BTY1017},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShawCJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShegaySPSV19,
author = {Maksim V. Shegay and
Dmitry A. Suplatov and
Nina N. Popova and
Vytas K. Svedas and
Vladimir V. Voevodin},
title = {parMATT: parallel multiple alignment of protein 3D-structures with
translations and twists for distributed-memory systems},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4456--4458},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz224},
doi = {10.1093/BIOINFORMATICS/BTZ224},
timestamp = {Thu, 10 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShegaySPSV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenXZWLZJSNXZ19,
author = {Qi Shen and
Goayu Xiao and
Yingwei Zheng and
Jie Wang and
Yue Liu and
Xutao Zhu and
Fan Jia and
Peng Su and
Binbin Nie and
Fuqiang Xu and
Bin Zhang},
title = {{ARMBIS:} accurate and robust matching of brain image sequences from
multiple modal imaging techniques},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5281--5289},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz404},
doi = {10.1093/BIOINFORMATICS/BTZ404},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenXZWLZJSNXZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenYWWGLZSY19,
author = {Jiangshan J. Shen and
Chao Yang and
Yong{-}Fei Wang and
Ting{-}You Wang and
Mengbiao Guo and
Yu{-}Lung Lau and
Xuejun Zhang and
Yujun Sheng and
Wanling Yang},
title = {{HLA-IMPUTER:} an easy to use web application for {HLA} imputation
and association analysis using population-specific reference panels},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1244--1246},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty730},
doi = {10.1093/BIOINFORMATICS/BTY730},
timestamp = {Fri, 09 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenYWWGLZSY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenZ19,
author = {Xiaotao Shen and
Zheng{-}Jiang Zhu},
title = {MetFlow: an interactive and integrated workflow for metabolomics data
cleaning and differential metabolite discovery},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2870--2872},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1066},
doi = {10.1093/BIOINFORMATICS/BTY1066},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShermanFSBR19,
author = {Thomas Sherman and
Jack M. Fu and
Robert B. Scharpf and
Alexandre Bureau and
Ingo Ruczinski},
title = {Detection of rare disease variants in extended pedigrees using {RVS}},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2509--2511},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty976},
doi = {10.1093/BIOINFORMATICS/BTY976},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShermanFSBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiCHJDWX19,
author = {Qiang Shi and
Weiya Chen and
Siqi Huang and
Fanglin Jin and
Yinghao Dong and
Yan Wang and
Zhidong Xue},
title = {DNN-Dom: predicting protein domain boundary from sequence alone by
deep neural network},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5128--5136},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz464},
doi = {10.1093/BIOINFORMATICS/BTZ464},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiCHJDWX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiCLC19,
author = {Wei Shi and
Jianhua Chen and
Mao Luo and
Min Chen},
title = {High efficiency referential genome compression algorithm},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2058--2065},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty934},
doi = {10.1093/BIOINFORMATICS/BTY934},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiCLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiFW19,
author = {Wenqiang Shi and
Oriol Fornes and
Wyeth W. Wasserman},
title = {Gene expression models based on transcription factor binding events
confer insight into functional cis-regulatory variants},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2610--2617},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty992},
doi = {10.1093/BIOINFORMATICS/BTY992},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiFW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiJYCYLL19,
author = {Xingjie Shi and
Yuling Jiao and
Yi Yang and
Ching{-}Yu Cheng and
Can Yang and
Xinyi Lin and
Jin Liu},
title = {{VIMCO:} variational inference for multiple correlated outcomes in
genome-wide association studies},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3693--3700},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz167},
doi = {10.1093/BIOINFORMATICS/BTZ167},
timestamp = {Mon, 20 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiJYCYLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiMTMW19,
author = {Lizhen Shi and
Xiandong Meng and
Elizabeth Tseng and
Michael Mascagni and
Zhong Wang},
title = {SpaRC: scalable sequence clustering using Apache Spark},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {760--768},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty733},
doi = {10.1093/BIOINFORMATICS/BTY733},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiMTMW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiWRLB19,
author = {Lin Shi and
Johan A. Westerhuis and
Johan Ros{\'{e}}n and
Rikard Landberg and
Carl Brunius},
title = {Variable selection and validation in multivariate modelling},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {972--980},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty710},
doi = {10.1093/BIOINFORMATICS/BTY710},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiWRLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiWSLKJ19,
author = {Yang Shi and
Mengqiao Wang and
Weiping Shi and
Ji{-}Hyun Lee and
Huining Kang and
Hui Jiang},
title = {Accurate and efficient estimation of small P-values with the cross-entropy
method: applications in genomic data analysis},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2441--2448},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1005},
doi = {10.1093/BIOINFORMATICS/BTY1005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiWSLKJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiZRHPCRVHSK19,
author = {W. Jenny Shi and
Yonghua Zhuang and
Pamela H. Russell and
Brian Hobbs and
Margaret M. Parker and
Peter J. Castaldi and
Pratyaydipta Rudra and
Brian Vestal and
Craig P. Hersh and
Laura M. Saba and
Katerina J. Kechris},
title = {Unsupervised discovery of phenotype-specific multi-omics networks},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4336--4343},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz226},
doi = {10.1093/BIOINFORMATICS/BTZ226},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiZRHPCRVHSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiauHT19,
author = {Cheng{-}Kai Shiau and
Jia{-}Hsin Huang and
Huai{-}Kuang Tsai},
title = {{CATANA:} a tool for generating comprehensive annotations of alternative
transcript events},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1414--1415},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty795},
doi = {10.1093/BIOINFORMATICS/BTY795},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiauHT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShinHHCK19,
author = {Sunyoung Shin and
Rebecca Hudson and
Christopher Harrison and
Mark Craven and
S{\"{u}}nd{\"{u}}z Keles},
title = {atSNP Search: a web resource for statistically evaluating influence
of human genetic variation on transcription factor binding},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2657--2659},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1010},
doi = {10.1093/BIOINFORMATICS/BTY1010},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShinHHCK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShrikumarPK19,
author = {Avanti Shrikumar and
Eva Prakash and
Anshul Kundaje},
title = {GkmExplain: fast and accurate interpretation of nonlinear gapped k-mer
SVMs},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i173--i182},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz322},
doi = {10.1093/BIOINFORMATICS/BTZ322},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShrikumarPK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SibleySM19,
author = {Thomas R. Sibley and
Evan J. Silberman and
James I. Mullins},
title = {{ISDB:} a database toolkit for storing and analyzing viral integration
site data},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1073--1075},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty712},
doi = {10.1093/BIOINFORMATICS/BTY712},
timestamp = {Fri, 29 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SibleySM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilvaBMD19,
author = {Ana S. C. Silva and
Robbin Bouwmeester and
Lennart Martens and
Sven Degroeve},
title = {Accurate peptide fragmentation predictions allow data driven approaches
to replace and improve upon proteomics search engine scoring functions},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5243--5248},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz383},
doi = {10.1093/BIOINFORMATICS/BTZ383},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SilvaBMD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilvaCGYHNLB19,
author = {Tiago Chedraoui Silva and
Simon G. Coetzee and
Nicole Gull and
Lijing Yao and
Dennis J. Hazelett and
Houtan Noushmehr and
De{-}Chen Lin and
Benjamin P. Berman},
title = {{ELMER} v.2: an R/Bioconductor package to reconstruct gene regulatory
networks from {DNA} methylation and transcriptome profiles},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1974--1977},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty902},
doi = {10.1093/BIOINFORMATICS/BTY902},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SilvaCGYHNLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimonciniZSB19,
author = {David Simoncini and
Kam Y. J. Zhang and
Thomas Schiex and
Sophie Barbe},
title = {A structural homology approach for computational protein design with
flexible backbone},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2418--2426},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty975},
doi = {10.1093/BIOINFORMATICS/BTY975},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimonciniZSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimonovskySL19,
author = {Eyal Simonovsky and
Ronen Schuster and
Esti Yeger Lotem},
title = {Large-scale analysis of human gene expression variability associates
highly variable drug targets with lower drug effectiveness and safety},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3028--3037},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz023},
doi = {10.1093/BIOINFORMATICS/BTZ023},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimonovskySL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SinghSGRVTC19,
author = {Amrit Singh and
Casey P. Shannon and
Beno{\^{\i}}t Gautier and
Florian Rohart and
Micha{\"{e}}l Vacher and
Scott J. Tebbutt and
Kim{-}Anh L{\^{e}} Cao},
title = {{DIABLO:} an integrative approach for identifying key molecular drivers
from multi-omics assays},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3055--3062},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1054},
doi = {10.1093/BIOINFORMATICS/BTY1054},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SinghSGRVTC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiragusaHFVP19,
author = {Enrico Siragusa and
Niina Haiminen and
Richard Finkers and
Richard G. F. Visser and
Laxmi Parida},
title = {Haplotype assembly of autotetraploid potato using integer linear programing},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3279--3286},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz060},
doi = {10.1093/BIOINFORMATICS/BTZ060},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiragusaHFVP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiragusaHFVP19a,
author = {Enrico Siragusa and
Niina Haiminen and
Richard Finkers and
Richard G. F. Visser and
Laxmi Parida},
title = {Haplotype assembly of autotetraploid potato using integer linear programing},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4534},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz511},
doi = {10.1093/BIOINFORMATICS/BTZ511},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiragusaHFVP19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkalicMJF19,
author = {Miha Skalic and
Gerard Mart{\'{\i}}nez{-}Rosell and
Jos{\'{e}} Jim{\'{e}}nez and
Gianni De Fabritiis},
title = {PlayMolecule BindScope: large scale CNN-based virtual screening on
the web},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1237--1238},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty758},
doi = {10.1093/BIOINFORMATICS/BTY758},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkalicMJF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkalicVJMF19,
author = {Miha Skalic and
Alejandro Varela{-}Rial and
Jos{\'{e}} Jim{\'{e}}nez and
Gerard Mart{\'{\i}}nez{-}Rosell and
Gianni De Fabritiis},
title = {LigVoxel: inpainting binding pockets using 3D-convolutional neural
networks},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {243--250},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty583},
doi = {10.1093/BIOINFORMATICS/BTY583},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkalicVJMF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkumsTZ19,
author = {Pavel Skums and
Viachaslau Tsyvina and
Alex Zelikovsky},
title = {Inference of clonal selection in cancer populations using single-cell
sequencing data},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i398--i407},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz392},
doi = {10.1093/BIOINFORMATICS/BTZ392},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkumsTZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmailiGH19,
author = {Fatima Zohra Smaili and
Xin Gao and
Robert Hoehndorf},
title = {OPA2Vec: combining formal and informal content of biomedical ontologies
to improve similarity-based prediction},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2133--2140},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty933},
doi = {10.1093/BIOINFORMATICS/BTY933},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmailiGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithYK19,
author = {Lucian P. Smith and
Jon A Yamato and
Mary K. Kuhner},
title = {CNValidator: validating somatic copy-number inference},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2660--2662},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1022},
doi = {10.1093/BIOINFORMATICS/BTY1022},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithYK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Solano-RomanCOC19,
author = {Antonio Solano{-}Rom{\'{a}}n and
Carlos Cruz{-}Castillo and
Dietmar Offenhuber and
Andr{\'{e}}s Colubri},
title = {{NX4:} a web-based visualization of large multiple sequence alignments},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4800--4802},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz457},
doi = {10.1093/BIOINFORMATICS/BTZ457},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Solano-RomanCOC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SolmazLGAGK19,
author = {Mustafa Solmaz and
Adam Lane and
Bilal Gonen and
Ogulsheker Akmamedova and
Mehmet Hadi Gunes and
Kakajan Komurov},
title = {Graphical data mining of cancer mechanisms with {SEMA}},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4413--4418},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz303},
doi = {10.1093/BIOINFORMATICS/BTZ303},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SolmazLGAGK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongCGC19,
author = {Fei Song and
Chunmei Cui and
Lin Gao and
Qinghua Cui},
title = {miES: predicting the essentiality of miRNAs with machine learning
and sequence features},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1053--1054},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty738},
doi = {10.1093/BIOINFORMATICS/BTY738},
timestamp = {Mon, 08 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongCGC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongLSC19,
author = {Lei Song and
Aiyi Liu and
Jianxin Shi and
Molecular Genetics of Schizophrenia Consortium},
title = {SummaryAUC: a tool for evaluating the performance of polygenic risk
prediction models in validation datasets with only summary level statistics},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4038--4044},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz176},
doi = {10.1093/BIOINFORMATICS/BTZ176},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongLSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SotoPA19,
author = {Axel J. Soto and
Piotr Przybyla and
Sophia Ananiadou},
title = {Thalia: semantic search engine for biomedical abstracts},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1799--1801},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty871},
doi = {10.1093/BIOINFORMATICS/BTY871},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SotoPA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoulHBS19,
author = {Jamie Soul and
Tim E. Hardingham and
Ray P. Boot{-}Handford and
Jean{-}Marc Schwartz},
title = {SkeletalVis: an exploration and meta-analysis data portal of cross-species
skeletal transcriptomics data},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2283--2290},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty947},
doi = {10.1093/BIOINFORMATICS/BTY947},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoulHBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoylevLAAH19,
author = {Arda Soylev and
Thong Minh Le and
Hajar Amini and
Can Alkan and
Fereydoun Hormozdiari},
title = {Discovery of tandem and interspersed segmental duplications using
high-throughput sequencing},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3923--3930},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz237},
doi = {10.1093/BIOINFORMATICS/BTZ237},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoylevLAAH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SrinivasanCM19,
author = {Shyam Srinivasan and
William R. Cluett and
Radhakrishnan Mahadevan},
title = {A scalable method for parameter identification in kinetic models of
metabolism using steady-state data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5216--5225},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz445},
doi = {10.1093/BIOINFORMATICS/BTZ445},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SrinivasanCM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StansfieldCD19,
author = {John C. Stansfield and
Kellen Garrison Cresswell and
Mikhail G. Dozmorov},
title = {multiHiCcompare: joint normalization and comparative analysis of complex
Hi-C experiments},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2916--2923},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz048},
doi = {10.1093/BIOINFORMATICS/BTZ048},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StansfieldCD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StephensonLNHT19,
author = {James D. Stephenson and
Roman A. Laskowski and
Andrew Nightingale and
Matthew E. Hurles and
Janet M. Thornton},
title = {VarMap: a web tool for mapping genomic coordinates to protein sequence
and structure and retrieving protein structural annotations},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4854--4856},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz482},
doi = {10.1093/BIOINFORMATICS/BTZ482},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StephensonLNHT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StewartASRW19,
author = {Robert D. Stewart and
Marc D. Auffret and
Timothy J. Snelling and
Rainer Roehe and
Mick Watson},
title = {MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled
genomes (MAGs)},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2150--2152},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty905},
doi = {10.1093/BIOINFORMATICS/BTY905},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StewartASRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Stolzenberg19,
author = {Sebastian Stolzenberg},
title = {PySFD: comprehensive molecular insights from significant feature differences
detected among many simulated ensembles},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1588--1590},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty818},
doi = {10.1093/BIOINFORMATICS/BTY818},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Stolzenberg19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StovnerS19,
author = {Endre Bakken Stovner and
P{\aa}l S{\ae}trom},
title = {epic2 efficiently finds diffuse domains in ChIP-seq data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4392--4393},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz232},
doi = {10.1093/BIOINFORMATICS/BTZ232},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StovnerS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StraussRW19,
author = {Magdalena E. Strau{\ss} and
John E. Reid and
Lorenz Wernisch},
title = {GPseudoRank: a permutation sampler for single cell orderings},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {611--618},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty664},
doi = {10.1093/BIOINFORMATICS/BTY664},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StraussRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrazarZKTEPSDS19,
author = {Martin Strazar and
Lan Zagar and
Jaka Kokosar and
Vesna Tanko and
Ales Erjavec and
Pavlin G. Policar and
Anze Staric and
Janez Demsar and
Gad Shaulsky and
Vilas Menon and
Andrew Lemire and
Anup Parikh and
Blaz Zupan},
title = {scOrange - a tool for hands-on training of concepts from single-cell
data analytics},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i4--i12},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz348},
doi = {10.1093/BIOINFORMATICS/BTZ348},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrazarZKTEPSDS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StreitGSWZH19,
author = {Marc Streit and
Samuel Gratzl and
Holger Stitz and
Andreas Wernitznig and
Thomas Zichner and
Christian Haslinger},
title = {Ordino: a visual cancer analysis tool for ranking and exploring genes,
cell lines and tissue samples},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3140--3142},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz009},
doi = {10.1093/BIOINFORMATICS/BTZ009},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StreitGSWZH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrienGCHBH19,
author = {Joeri van Strien and
Sergio Guerrero{-}Castillo and
Iliana A Chatzispyrou and
Riekelt H. Houtkooper and
Ulrich Brandt and
Martijn A. Huynen},
title = {COmplexome Profiling ALignment {(COPAL)} reveals remodeling of mitochondrial
protein complexes in Barth syndrome},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3083--3091},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz025},
doi = {10.1093/BIOINFORMATICS/BTZ025},
timestamp = {Fri, 06 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrienGCHBH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SturmFPZBFLA19,
author = {Gregor Sturm and
Francesca Finotello and
Florent Petitprez and
Jitao David Zhang and
Jan Baumbach and
Wolf{-}Herman Fridman and
Markus List and
Tatsiana Aneichyk},
title = {Comprehensive evaluation of transcriptome-based cell-type quantification
methods for immuno-oncology},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i436--i445},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz363},
doi = {10.1093/BIOINFORMATICS/BTZ363},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SturmFPZBFLA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuLSPY19,
author = {Hong Su and
Mengchen Liu and
Saisai Sun and
Zhenling Peng and
Jianyi Yang},
title = {Improving the prediction of protein-nucleic acids binding residues
via multiple sequence profiles and the consensus of complementary
methods},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {930--936},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty756},
doi = {10.1093/BIOINFORMATICS/BTY756},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuLSPY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SulaimanovKBIPK19,
author = {Nurgazy Sulaimanov and
Sunil Kumar and
Fr{\'{e}}d{\'{e}}ric Burdet and
Mark Ibberson and
Marco Pagni and
Heinz Koeppl},
title = {Inferring gene expression networks with hubs using a degree weighted
Lasso approach},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {987--994},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty716},
doi = {10.1093/BIOINFORMATICS/BTY716},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SulaimanovKBIPK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SumanaweeraAK19,
author = {Dinithi Sumanaweera and
Lloyd Allison and
Arun Siddharth Konagurthu},
title = {Statistical compression of protein sequences and inference of marginal
probability landscapes over competing alignments using finite state
models and Dirichlet priors},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i360--i369},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz368},
doi = {10.1093/BIOINFORMATICS/BTZ368},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SumanaweeraAK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunLLCPZYLC19,
author = {Jiamin Sun and
Hao Liu and
Jianxiao Liu and
Shikun Cheng and
Yong Peng and
Qinghua Zhang and
Jianbing Yan and
Haijun Liu and
Ling{-}Ling Chen},
title = {CRISPR-Local: a local single-guide {RNA} (sgRNA) design tool for non-reference
plant genomes},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2501--2503},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty970},
doi = {10.1093/BIOINFORMATICS/BTY970},
timestamp = {Mon, 08 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunLLCPZYLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunM19,
author = {Chen Sun and
Paul Medvedev},
title = {Toward fast and accurate {SNP} genotyping from whole genome sequencing
data for bedside diagnostics},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {415--420},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty641},
doi = {10.1093/BIOINFORMATICS/BTY641},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunWPY19,
author = {Saisai Sun and
Qi Wu and
Zhenling Peng and
Jianyi Yang},
title = {Enhanced prediction of {RNA} solvent accessibility with long short-term
memory neural networks and improved sequence profiles},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1686--1691},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty876},
doi = {10.1093/BIOINFORMATICS/BTY876},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunWPY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunZMOCZ19,
author = {Shiquan Sun and
Jiaqiang Zhu and
Sahar Mozaffari and
Carole Ober and
Mengjie Chen and
Xiang Zhou},
title = {Heritability estimation and differential analysis of count data with
generalized linear mixed models in genomic sequencing studies},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {487--496},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty644},
doi = {10.1093/BIOINFORMATICS/BTY644},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunZMOCZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunZZCG19,
author = {Hui{-}Zeng Sun and
Ke Zhao and
Mi Zhou and
Yanhong Chen and
Le Luo Guan},
title = {Landscape of multi-tissue global gene expression reveals the regulatory
signatures of feed efficiency in beef cattle},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1712--1719},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty883},
doi = {10.1093/BIOINFORMATICS/BTY883},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunZZCG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SupersonPDB19,
author = {Ashley A Superson and
Doug Phelan and
Allyson Dekovich and
Fabia U. Battistuzzi},
title = {Choice of species affects phylogenetic stability of deep nodes: an
empirical example in Terrabacteria},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3608--3616},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz121},
doi = {10.1093/BIOINFORMATICS/BTZ121},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SupersonPDB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuprunS19,
author = {Maria Suprun and
Mayte Su{\'{a}}rez{-}Fari{\~{n}}as},
title = {PlateDesigner: a web-based application for the design of microplate
experiments},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1605--1607},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty853},
doi = {10.1093/BIOINFORMATICS/BTY853},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuprunS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SvetlitskyDCZ19,
author = {Dina Svetlitsky and
Tal Dagan and
Vered Chalifa{-}Caspi and
Michal Ziv{-}Ukelson},
title = {CSBFinder: discovery of colinear syntenic blocks across thousands
of prokaryotic genomes},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1634--1643},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty861},
doi = {10.1093/BIOINFORMATICS/BTY861},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SvetlitskyDCZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SvishchevaBZKA19,
author = {Gulnara R. Svishcheva and
Nadezhda M. Belonogova and
Irina V. Zorkoltseva and
Anatoly V. Kirichenko and
Tatiana I. Axenovich},
title = {Gene-based association tests using {GWAS} summary statistics},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3701--3708},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz172},
doi = {10.1093/BIOINFORMATICS/BTZ172},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SvishchevaBZKA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwansonLBSF19,
author = {David M. Swanson and
Tonje Lien and
Helga Bergholtz and
Therese S{\o}rlie and
Arnoldo Frigessi},
title = {A Bayesian two-way latent structure model for genomic data integration
reveals few pan-genomic cluster subtypes in a breast cancer cohort},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4886--4897},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz381},
doi = {10.1093/BIOINFORMATICS/BTZ381},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwansonLBSF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwensonB19,
author = {Krister M. Swenson and
Mathieu Blanchette},
title = {Large-scale mammalian genome rearrangements coincide with chromatin
interactions},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i117--i126},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz343},
doi = {10.1093/BIOINFORMATICS/BTZ343},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwensonB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SychSVMOTRMR19,
author = {Taras Sych and
Thomas Schubert and
Romain Vauchelles and
Josef Madl and
Ramin Omidvar and
Roland Thuenauer and
Ludovic Richert and
Yves M{\'{e}}ly and
Winfried R{\"{o}}mer},
title = {{GUV-AP:} multifunctional FIJI-based tool for quantitative image analysis
of Giant Unilamellar Vesicles},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2340--2342},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty962},
doi = {10.1093/BIOINFORMATICS/BTY962},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SychSVMOTRMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TagirdzhanovSG19,
author = {Azat M. Tagirdzhanov and
Alexander Shlemov and
Alexey A. Gurevich},
title = {{NPS:} scoring and evaluating the statistical significance of peptidic
natural product-spectrum matches},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i315--i323},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz374},
doi = {10.1093/BIOINFORMATICS/BTZ374},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TagirdzhanovSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaherzadehDGZC19,
author = {Ghazaleh Taherzadeh and
Abdollah Dehzangi and
Maryam Golchin and
Yaoqi Zhou and
Matthew P. Campbell},
title = {SPRINT-Gly: predicting {N-} and O-linked glycosylation sites of human
and mouse proteins by using sequence and predicted structural properties},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4140--4146},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz215},
doi = {10.1093/BIOINFORMATICS/BTZ215},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaherzadehDGZC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TalukderSLH19,
author = {Amlan Talukder and
Samaneh Saadat and
Xiaoman Li and
Haiyan Hu},
title = {{EPIP:} a novel approach for condition-specific enhancer-promoter
interaction prediction},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3877--3883},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz641},
doi = {10.1093/BIOINFORMATICS/BTZ641},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TalukderSLH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamposisTTKB19,
author = {Ioannis A. Tamposis and
Konstantinos D. Tsirigos and
Margarita C. Theodoropoulou and
Panagiota I. Kontou and
Pantelis G. Bagos},
title = {Semi-supervised learning of Hidden Markov Models for biological sequence
analysis},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2208--2215},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty910},
doi = {10.1093/BIOINFORMATICS/BTY910},
timestamp = {Wed, 23 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TamposisTTKB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamposisTTKTSLB19,
author = {Ioannis A. Tamposis and
Konstantinos D. Tsirigos and
Margarita C. Theodoropoulou and
Panagiota I. Kontou and
Georgios N. Tsaousis and
Dimitra Sarantopoulou and
Zoi I. Litou and
Pantelis G. Bagos},
title = {{JUCHMME:} a Java Utility for Class Hidden Markov Models and Extensions
for biological sequence analysis},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5309--5312},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz533},
doi = {10.1093/BIOINFORMATICS/BTZ533},
timestamp = {Wed, 23 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TamposisTTKTSLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanCCN19,
author = {Chongyang Tan and
Wei Cui and
Xinping Cui and
Kang Ning},
title = {Strain-GeMS: optimized subspecies identification from microbiome data
based on accurate variant modeling},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1789--1791},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty844},
doi = {10.1093/BIOINFORMATICS/BTY844},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanCCN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangFT19,
author = {Haiming Tang and
Robert D. Finn and
Paul D. Thomas},
title = {TreeGrafter: phylogenetic tree-based annotation of proteins with Gene
Ontology terms and other annotations},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {518--520},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty625},
doi = {10.1093/BIOINFORMATICS/BTY625},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangFT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangL19,
author = {You Tang and
Xiaolei Liu},
title = {{G2P:} a Genome-Wide-Association-Study simulation tool for genotype
simulation, phenotype simulation and power evaluation},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3852--3854},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz126},
doi = {10.1093/BIOINFORMATICS/BTZ126},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TannerWDS19,
author = {Georgette Tanner and
David R. Westhead and
Alastair P. Droop and
Lucy F. Stead},
title = {Simulation of heterogeneous tumour genomes with HeteroGenesis and
in silico whole exome sequencing},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2850--2852},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1063},
doi = {10.1093/BIOINFORMATICS/BTY1063},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TannerWDS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TataruB19,
author = {Paula Tataru and
Thomas Bataillon},
title = {polyDFEv2.0: testing for invariance of the distribution of fitness
effects within and across species},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2868--2869},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1060},
doi = {10.1093/BIOINFORMATICS/BTY1060},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TataruB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaubertRMS19,
author = {Oskar Taubert and
Ines Reinartz and
Henning Meyerhenke and
Alexander Schug},
title = {diSTruct v1.0: generating biomolecular structures from distance constraints},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5337--5338},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz578},
doi = {10.1093/BIOINFORMATICS/BTZ578},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaubertRMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TavakoliY19,
author = {Sahar Tavakoli and
Shibu Yooseph},
title = {Learning a mixture of microbial networks using minorization-maximization},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i23--i30},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz370},
doi = {10.1093/BIOINFORMATICS/BTZ370},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TavakoliY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TelloGLRCD19,
author = {Daniel Tello and
Juanita Gil and
Cristian D. Loaiza and
John J. Riascos and
Nicol{\'{a}}s Cardozo and
Jorge Duitama},
title = {{NGSEP3:} accurate variant calling across species and sequencing protocols},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4716--4723},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz275},
doi = {10.1093/BIOINFORMATICS/BTZ275},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TelloGLRCD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThenenAC19,
author = {Nora von Thenen and
Erman Ayday and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {Re-identification of individuals in genomic data-sharing beacons via
allele inference},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {365--371},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty643},
doi = {10.1093/BIOINFORMATICS/BTY643},
timestamp = {Fri, 11 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThenenAC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TheorellSGN19,
author = {Axel Theorell and
Johannes Seiffarth and
Alexander Gr{\"{u}}nberger and
Katharina N{\"{o}}h},
title = {When a single lineage is not enough: Uncertainty-Aware Tracking for
spatio-temporal live-cell image analysis},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1221--1228},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty776},
doi = {10.1093/BIOINFORMATICS/BTY776},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TheorellSGN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThibodeauS19,
author = {Asa Thibodeau and
Dong{-}Guk Shin},
title = {TriPOINT: a software tool to prioritize important genes in pathways
and their non-coding regulators},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2686--2689},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty998},
doi = {10.1093/BIOINFORMATICS/BTY998},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThibodeauS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TierrafriaMCSAI19,
author = {V{\'{\i}}ctor H. Tierrafr{\'{\i}}a and
Citlalli Mej{\'{\i}}a{-}Almonte and
J. M. Camacho{-}Zaragoza and
Heladia Salgado and
K. Alquicira and
Chu Ishida and
Socorro Gama{-}Castro and
Julio Collado{-}Vides},
title = {{MCO:} towards an ontology and unified vocabulary for a framework-based
annotation of microbial growth conditions},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {856--864},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty689},
doi = {10.1093/BIOINFORMATICS/BTY689},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TierrafriaMCSAI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TimonenSFMKP19,
author = {Oskari Timonen and
Mikko S{\"{a}}rkk{\"{a}} and
Tibor F{\"{u}}l{\"{o}}p and
Anton Mattsson and
Juha Kek{\"{a}}l{\"{a}}inen and
Jussi Paananen},
title = {Varanto: variant enrichment analysis and annotation},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3154--3156},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz046},
doi = {10.1093/BIOINFORMATICS/BTZ046},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TimonenSFMKP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TiurynS19,
author = {Jerzy Tiuryn and
Ewa Szczurek},
title = {Learning signaling networks from combinatorial perturbations by exploiting
siRNA off-target effects},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i605--i614},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz334},
doi = {10.1093/BIOINFORMATICS/BTZ334},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TiurynS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TodorovGBS19,
author = {Petar V. Todorov and
Benjamin M. Gyori and
John A. Bachman and
Peter K. Sorger},
title = {{INDRA-IPM:} interactive pathway modeling using natural language with
automated assembly},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4501--4503},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz289},
doi = {10.1093/BIOINFORMATICS/BTZ289},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TodorovGBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TolstoganovBCP19,
author = {Ivan Tolstoganov and
Anton Bankevich and
Zhoutao Chen and
Pavel A. Pevzner},
title = {cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i61--i70},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz349},
doi = {10.1093/BIOINFORMATICS/BTZ349},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TolstoganovBCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TonekaboniMEH19,
author = {Seyed Ali Madani Tonekaboni and
Venkata Satya Kumar Manem and
Nehme El{-}Hachem and
Benjamin Haibe{-}Kains},
title = {{SIGN:} similarity identification in gene expression},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4830--4833},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz485},
doi = {10.1093/BIOINFORMATICS/BTZ485},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TonekaboniMEH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorkamanehLRB19,
author = {Davoud Torkamaneh and
J{\'{e}}r{\^{o}}me Laroche and
Istvan Rajcan and
Fran{\c{c}}ois Belzile},
title = {{SRG} extractor: a skinny reference genome approach for reduced-representation
sequencing},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3160--3162},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz043},
doi = {10.1093/BIOINFORMATICS/BTZ043},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorkamanehLRB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorngA19,
author = {Wen Torng and
Russ B. Altman},
title = {High precision protein functional site detection using 3D convolutional
neural networks},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1503--1512},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty813},
doi = {10.1093/BIOINFORMATICS/BTY813},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorngA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Toro-DominguezM19,
author = {Daniel Toro{-}Dom{\'{\i}}nguez and
Jordi Martorell{-}Marugan and
Ra{\'{u}}l L{\'{o}}pez{-}Dom{\'{\i}}nguez and
Adri{\'{a}}n Garc{\'{\i}}a{-}Moreno and
V{\'{\i}}ctor Gonz{\'{a}}lez{-}Rumayor and
Marta E. Alarc{\'{o}}n{-}Riquelme and
Pedro Carmona{-}Saez},
title = {ImaGEO: integrative gene expression meta-analysis from {GEO} database},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {880--882},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty721},
doi = {10.1093/BIOINFORMATICS/BTY721},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Toro-DominguezM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrabelsiCB19,
author = {Ameni Trabelsi and
Mohamed Chaabane and
Asa Ben{-}Hur},
title = {Comprehensive evaluation of deep learning architectures for prediction
of {DNA/RNA} sequence binding specificities},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i269--i277},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz339},
doi = {10.1093/BIOINFORMATICS/BTZ339},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrabelsiCB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrainPAD19,
author = {Cl{\'{e}}ment{-}Marie Train and
Miguel Pignatelli and
Adrian M. Altenhoff and
Christophe Dessimoz},
title = {iHam and pyHam: visualizing and processing hierarchical orthologous
groups},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2504--2506},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty994},
doi = {10.1093/BIOINFORMATICS/BTY994},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrainPAD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TranMCASP19,
author = {T. Van Du Tran and
S{\'{e}}bastien Moretti and
Alix T. Coste and
Sara Amorim{-}Vaz and
Dominique Sanglard and
Marco Pagni},
title = {Condition-specific series of metabolic sub-networks and its application
for gene set enrichment analysis},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2258--2266},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty929},
doi = {10.1093/BIOINFORMATICS/BTY929},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TranMCASP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrebeauMTPE19,
author = {C{\'{e}}line Tr{\'{e}}beau and
Jacques Boutet de Monvel and
Fabienne Wong Jun Tai and
Christine Petit and
Rapha{\"{e}}l Etournay},
title = {DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations
in multiplex sequencing experiments},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2690--2691},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1030},
doi = {10.1093/BIOINFORMATICS/BTY1030},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrebeauMTPE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Trevisan-Herraz19,
author = {Marco Trevisan{-}Herraz and
Navratan Bagwan and
Fernando Garc{\'{\i}}a{-}Marqu{\'{e}}s and
Jose Manuel Rodriguez and
Inmaculada Jorge and
Iakes Ezkurdia and
Elena Bonzon{-}Kulichenko and
Jes{\'{u}}s V{\'{a}}zquez},
title = {SanXoT: a modular and versatile package for the quantitative analysis
of high-throughput proteomics experiments},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1594--1596},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty815},
doi = {10.1093/BIOINFORMATICS/BTY815},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Trevisan-Herraz19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrieuOWC19,
author = {Tuan Trieu and
Oluwatosin Oluwadare and
Julia Wopata and
Jianlin Cheng},
title = {GenomeFlow: a comprehensive graphical tool for modeling and analyzing
3D genome structure},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1416--1418},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty802},
doi = {10.1093/BIOINFORMATICS/BTY802},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrieuOWC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsubakiTS19,
author = {Masashi Tsubaki and
Kentaro Tomii and
Jun Sese},
title = {Compound-protein interaction prediction with end-to-end learning of
neural networks for graphs and sequences},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {309--318},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty535},
doi = {10.1093/BIOINFORMATICS/BTY535},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsubakiTS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsuchiyaYA19,
author = {Shinichiro Tsuchiya and
Issaku Yamada and
Kiyoko F. Aoki{-}Kinoshita},
title = {GlycanFormatConverter: a conversion tool for translating the complexities
of glycans},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2434--2440},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty990},
doi = {10.1093/BIOINFORMATICS/BTY990},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsuchiyaYA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TuLCDH19,
author = {Qichao Tu and
Lu Lin and
Lei Cheng and
Ye Deng and
Zhili He},
title = {NCycDB: a curated integrative database for fast and accurate metagenomic
profiling of nitrogen cycling genes},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1040--1048},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty741},
doi = {10.1093/BIOINFORMATICS/BTY741},
timestamp = {Tue, 12 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TuLCDH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TullerDYZAC19,
author = {Tamir Tuller and
Alon Diament and
Avital Yahalom and
Assaf Zemach and
Shimshi Atar and
Daniel A. Chamovitz},
title = {The {COP9} signalosome influences the epigenetic landscape of Arabidopsis
thaliana},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2718--2723},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1053},
doi = {10.1093/BIOINFORMATICS/BTY1053},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TullerDYZAC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TurnhoffEMKS19,
author = {Lisa{-}Katrin Turnhoff and
Ali Hadizadeh Esfahani and
Maryam Montazeri and
Nina Kusch and
Andreas Schuppert},
title = {{FORESEE:} a tool for the systematic comparison of translational drug
response modeling pipelines},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3846--3848},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz145},
doi = {10.1093/BIOINFORMATICS/BTZ145},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TurnhoffEMKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TyryshkinaCN19,
author = {Anastasia Tyryshkina and
Nate Coraor and
Anton Nekrutenko},
title = {Predicting runtimes of bioinformatics tools based on historical data:
five years of Galaxy usage},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3453--3460},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz054},
doi = {10.1093/BIOINFORMATICS/BTZ054},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TyryshkinaCN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UhrigK19,
author = {Sebastian Uhrig and
Holger Klein},
title = {PingPongPro: a tool for the detection of piRNA-mediated transposon-silencing
in small RNA-Seq data},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {335--336},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty578},
doi = {10.1093/BIOINFORMATICS/BTY578},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UhrigK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UllahADPMRSB19,
author = {Ehsan Ullah and
Micha{\"{e}}l Aupetit and
Arun Das and
Abhishek Patil and
Nooral Al Muftah and
Reda Rawi and
Mohamad Saad and
Halima Bensmail},
title = {KinVis: a visualization tool to detect cryptic relatedness in genetic
datasets},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2683--2685},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1028},
doi = {10.1093/BIOINFORMATICS/BTY1028},
timestamp = {Fri, 29 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UllahADPMRSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UllahPHW19,
author = {Insha Ullah and
Sudhir Paul and
Zhenjie Hong and
You{-}Gan Wang},
title = {Significance tests for analyzing gene expression data with small sample
sizes},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3996--4003},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz189},
doi = {10.1093/BIOINFORMATICS/BTZ189},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UllahPHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UmarovKLGS19,
author = {Ramzan Umarov and
Hiroyuki Kuwahara and
Yu Li and
Xin Gao and
Victor V. Solovyev},
title = {Promoter analysis and prediction in the human genome using sequence-based
deep learning models},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2730--2737},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1068},
doi = {10.1093/BIOINFORMATICS/BTY1068},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UmarovKLGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UrrutiaCZJ19,
author = {Eugene Urrutia and
Li Chen and
Haibo Zhou and
Yuchao Jiang},
title = {Destin: toolkit for single-cell analysis of chromatin accessibility},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3818--3820},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz141},
doi = {10.1093/BIOINFORMATICS/BTZ141},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UrrutiaCZJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ValcarcelTTCP19,
author = {Luis Vitores Valcarcel and
Ver{\'{o}}nica Torrano and
Luis Tobalina and
Arkaitz Carracedo and
Francisco J. Planes},
title = {rMTA: robust metabolic transformation analysis},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4350--4355},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz231},
doi = {10.1093/BIOINFORMATICS/BTZ231},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ValcarcelTTCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ValdeolivasTNPO19,
author = {Alberto Valdeolivas and
Laurent Tichit and
Claire Navarro and
Sophie Perrin and
Ga{\"{e}}lle Odelin and
Nicolas Levy and
Pierre Cau and
Elisabeth Remy and
Ana{\"{\i}}s Baudot},
title = {Random walk with restart on multiplex and heterogeneous biological
networks},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {497--505},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty637},
doi = {10.1093/BIOINFORMATICS/BTY637},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ValdeolivasTNPO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ValdesSN19,
author = {Camilo Valdes and
Vitalii Stebliankin and
Giri Narasimhan},
title = {Large scale microbiome profiling in the cloud},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i13--i22},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz356},
doi = {10.1093/BIOINFORMATICS/BTZ356},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ValdesSN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ValverdeCA19,
author = {H{\'{e}}ctor Valverde and
Francisco R. Cant{\'{o}}n and
Juan Carlos Aledo},
title = {MetOSite: an integrated resource for the study of methionine residues
sulfoxidation},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4849--4850},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz462},
doi = {10.1093/BIOINFORMATICS/BTZ462},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ValverdeCA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VaneechoutteV19,
author = {Dries Vaneechoutte and
Klaas Vandepoele},
title = {Curse: building expression atlases and co-expression networks from
public RNA-Seq data},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2880--2881},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1052},
doi = {10.1093/BIOINFORMATICS/BTY1052},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VaneechoutteV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VangoneSKGCTXB19,
author = {Anna Vangone and
J{\"{o}}rg Schaarschmidt and
Panagiotis I. Koukos and
Cunliang Geng and
Nevia Citro and
Mikael E. Trellet and
Li C. Xue and
Alexandre M. J. J. Bonvin},
title = {Large-scale prediction of binding affinity in protein-small ligand
complexes: the {PRODIGY-LIG} web server},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1585--1587},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty816},
doi = {10.1093/BIOINFORMATICS/BTY816},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VangoneSKGCTXB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanhataloLS19,
author = {Jarno Vanhatalo and
Zitong Li and
Mikko J. Sillanp{\"{a}}{\"{a}}},
title = {A Gaussian process model and Bayesian variable selection for mapping
function-valued quantitative traits with incomplete phenotypic data},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3684--3692},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz164},
doi = {10.1093/BIOINFORMATICS/BTZ164},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanhataloLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VaretC19,
author = {Hugo Varet and
Jean{-}Yves Copp{\'{e}}e},
title = {checkMyIndex: a web-based R/Shiny interface for choosing compatible
sequencing indexes},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {901--902},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty706},
doi = {10.1093/BIOINFORMATICS/BTY706},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VaretC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VargaT19,
author = {Julia Varga and
G{\'{a}}bor E. Tusn{\'{a}}dy},
title = {The TMCrys server for supporting crystallization of transmembrane
proteins},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4203--4204},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz108},
doi = {10.1093/BIOINFORMATICS/BTZ108},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VargaT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VavraFPBMBSMD19,
author = {Ondrej Vavra and
Jiri Filipovic and
Jan Plhak and
David Bednar and
S{\'{e}}rgio M. Marques and
Jan Brezovsky and
Jan Stourac and
Ludek Matyska and
Jir{\'{\i}} Damborsk{\'{y}}},
title = {CaverDock: a molecular docking-based tool to analyse ligand transport
through protein tunnels and channels},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4986--4993},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz386},
doi = {10.1093/BIOINFORMATICS/BTZ386},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VavraFPBMBSMD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VeldeICPESBAHKH19,
author = {K. Joeri van der Velde and
Floris Imhann and
Bart Charbon and
Chao Pang and
David van Enckevort and
Mariska Slofstra and
Ruggero Barbieri and
Rudi Alberts and
Dennis Hendriksen and
Fleur D. L. Kelpin and
Mark de Haan and
Tommy de Boer and
Sido Haakma and
Connor Stroomberg and
Salome Scholtens and
Gert{-}Jan van de Geijn and
Eleonora A. M. Festen and
Rinse K. Weersma and
Morris A. Swertz},
title = {{MOLGENIS} research: advanced bioinformatics data software for non-bioinformaticians},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1076--1078},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty742},
doi = {10.1093/BIOINFORMATICS/BTY742},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VeldeICPESBAHKH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VieiraR19,
author = {V{\'{\i}}tor Vieira and
Miguel Rocha},
title = {CoBAMP: a Python framework for metabolic pathway analysis in constraint-based
models},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5361--5362},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz598},
doi = {10.1093/BIOINFORMATICS/BTZ598},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VieiraR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VillaverdeFWHB19,
author = {Alejandro Fern{\'{a}}ndez Villaverde and
Fabian Fr{\"{o}}hlich and
Daniel Weindl and
Jan Hasenauer and
Julio R. Banga},
title = {Benchmarking optimization methods for parameter estimation in large
kinetic models},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {830--838},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty736},
doi = {10.1093/BIOINFORMATICS/BTY736},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VillaverdeFWHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VilskerMNFGDPAE19,
author = {Michael Vilsker and
Yumna Moosa and
Sam Nooij and
Vagner Fonseca and
Yoika Ghysens and
Korneel Dumon and
Raf Pauwels and
Luiz Carlos Alcantara and
Ewout Vanden Eynden and
Anne{-}Mieke Vandamme and
Koen Deforche and
Tulio de Oliveira},
title = {Genome Detective: an automated system for virus identification from
high-throughput sequencing data},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {871--873},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty695},
doi = {10.1093/BIOINFORMATICS/BTY695},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VilskerMNFGDPAE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VishnepolskyP19,
author = {Boris Vishnepolsky and
Malak Pirtskhalava},
title = {Comment on: 'Empirical comparison of web-based antimicrobial peptide
prediction tools'},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2692--2694},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1023},
doi = {10.1093/BIOINFORMATICS/BTY1023},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VishnepolskyP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Vitting-SeerupS19,
author = {Kristoffer Vitting{-}Seerup and
Albin Sandelin},
title = {IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns
of alternative splicing and its functional consequences},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4469--4471},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz247},
doi = {10.1093/BIOINFORMATICS/BTZ247},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Vitting-SeerupS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VogelBH19,
author = {Ivan Vogel and
Robert C. Blanshard and
Eva R. Hoffmann},
title = {SureTypeSC - a Random Forest and Gaussian mixture predictor of high
confidence genotypes in single-cell data},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {5055--5062},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz412},
doi = {10.1093/BIOINFORMATICS/BTZ412},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VogelBH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VuNCKWP19,
author = {Trung{-}Nghia Vu and
Ha{-}Nam Nguyen and
Stefano Calza and
Krishna R. Kalari and
Liewei Wang and
Yudi Pawitan},
title = {Cell-level somatic mutation detection from single-cell {RNA} sequencing},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4679--4687},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz288},
doi = {10.1093/BIOINFORMATICS/BTZ288},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VuNCKWP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WagnerPM19,
author = {Mitchell J. Wagner and
Aditya Pratapa and
T. M. Murali},
title = {Reconstructing signaling pathways using regular language constrained
paths},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i624--i633},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz360},
doi = {10.1093/BIOINFORMATICS/BTZ360},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WagnerPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaitWC19,
author = {Eric Wait and
Mark R. Winter and
Andrew R. Cohen},
title = {Hydra image processor: 5-D {GPU} image analysis library with {MATLAB}
and python wrappers},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5393--5395},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz523},
doi = {10.1093/BIOINFORMATICS/BTZ523},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaitWC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WallaceRFIS19,
author = {Z. S. Wallace and
Sara Brin Rosenthal and
Kathleen M. Fisch and
Trey Ideker and
Roman S{\'{a}}sik},
title = {On entropy and information in gene interaction networks},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {815--822},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty691},
doi = {10.1093/BIOINFORMATICS/BTY691},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WallaceRFIS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshNWTCJTR19,
author = {Ian Walsh and
Terry Nguyen{-}Khuong and
Katherine Wongtrakul{-}Kish and
Shi Jie Tay and
Daniel Chew and
Tasha Jos{\'{e}} and
Christopher H. Taron and
Pauline M. Rudd},
title = {GlycanAnalyzer: software for automated interpretation of N-glycan
profiles after exoglycosidase digestions},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {688--690},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty681},
doi = {10.1093/BIOINFORMATICS/BTY681},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshNWTCJTR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshNWTCJTR19a,
author = {Ian Walsh and
Terry Nguyen{-}Khuong and
Katherine Wongtrakul{-}Kish and
Shi Jie Tay and
Daniel Chew and
Tasha Jos{\'{e}} and
Christopher H. Taron and
Pauline M. Rudd},
title = {GlycanAnalyzer: software for automated interpretation of N-glycan
profiles after exoglycosidase digestions},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3214},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz077},
doi = {10.1093/BIOINFORMATICS/BTZ077},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshNWTCJTR19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalterSRD19,
author = {Carolin Walter and
Daniel Schuetzmann and
Frank Rosenbauer and
Martin Dugas},
title = {Benchmarking of 4C-seq pipelines based on real and simulated data},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4938--4945},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz426},
doi = {10.1093/BIOINFORMATICS/BTZ426},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalterSRD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WanHXJZ19,
author = {Fangping Wan and
Lixiang Hong and
An Xiao and
Tao Jiang and
Jianyang Zeng},
title = {NeoDTI: neural integration of neighbor information from a heterogeneous
network for discovering new drug-target interactions},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {104--111},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty543},
doi = {10.1093/BIOINFORMATICS/BTY543},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WanHXJZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wang19,
author = {Dapeng Wang},
title = {IntronDB: a database for eukaryotic intron features},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4400--4401},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz242},
doi = {10.1093/BIOINFORMATICS/BTZ242},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wang19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangBHWZDPZZLS19,
author = {Yaojun Wang and
Dongbo Bu and
Chuncui Huang and
Hui Wang and
Jinyu Zhou and
Junchuan Dong and
Weiyi Pan and
Jingwei Zhang and
Qi Zhang and
Yan Li and
Shiwei Sun},
title = {Best-first search guided multistage mass spectrometry-based glycan
identification},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2991--2997},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz056},
doi = {10.1093/BIOINFORMATICS/BTZ056},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangBHWZDPZZLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangFWC19,
author = {Yue Wang and
Jennifer M. Franks and
Michael L. Whitfield and
Chao Cheng},
title = {BioMethyl: an {R} package for biological interpretation of {DNA} methylation
data},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3635--3641},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz137},
doi = {10.1093/BIOINFORMATICS/BTZ137},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangFWC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangFWLXZG19,
author = {Sheng Wang and
Shiyang Fei and
Zongan Wang and
Yu Li and
Jinbo Xu and
Feng Zhao and
Xin Gao},
title = {PredMP: a web server for de novo prediction and visualization of membrane
proteins},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {691--693},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty684},
doi = {10.1093/BIOINFORMATICS/BTY684},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangFWLXZG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangHHSZ19,
author = {Meiling Wang and
Xiaoke Hao and
Jiashuang Huang and
Wei Shao and
Daoqiang Zhang},
title = {Discovering network phenotype between genetic risk factors and disease
status via diagnosis-aligned multi-modality regression method in Alzheimer's
disease},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1948--1957},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty911},
doi = {10.1093/BIOINFORMATICS/BTY911},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangHHSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangHSJSM19,
author = {Zichen Wang and
Edward He and
Kevin Sani and
Kathleen M. Jagodnik and
Moshe C. Silverstein and
Avi Ma'ayan},
title = {Drug Gene Budger {(DGB):} an application for ranking drugs to modulate
a specific gene based on transcriptomic signatures},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1247--1248},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty763},
doi = {10.1093/BIOINFORMATICS/BTY763},
timestamp = {Thu, 23 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangHSJSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLAX19,
author = {Haohan Wang and
Benjamin J. Lengerich and
Bryon Aragam and
Eric P. Xing},
title = {Precision Lasso: accounting for correlations and linear dependencies
in high-dimensional genomic data},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1181--1187},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty750},
doi = {10.1093/BIOINFORMATICS/BTY750},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLAX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLX19,
author = {Duolin Wang and
Yanchun Liang and
Dong Xu},
title = {Capsule network for protein post-translational modification site prediction},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2386--2394},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty977},
doi = {10.1093/BIOINFORMATICS/BTY977},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLYXMLHAZCSZ19,
author = {Jiawei Wang and
Jiahui Li and
Bingjiao Yang and
Ruopeng Xie and
Tatiana T. Marquez{-}Lago and
Andr{\'{e}} Leier and
Morihiro Hayashida and
Tatsuya Akutsu and
Yanju Zhang and
Kuo{-}Chen Chou and
Joel Selkrig and
Tieli Zhou and
Jiangning Song and
Trevor Lithgow},
title = {Bastion3: a two-layer ensemble predictor of type {III} secreted effectors},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2017--2028},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty914},
doi = {10.1093/BIOINFORMATICS/BTY914},
timestamp = {Fri, 23 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLYXMLHAZCSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMSWYWKSLTMY19,
author = {Kevin Y. X. Wang and
Alexander M. Menzies and
Ines P. Silva and
James S. Wilmott and
Yibing Yan and
Matthew Wongchenko and
Richard F. Kefford and
Richard A. Scolyer and
Georgina V. Long and
Garth Tarr and
Samuel M{\"{u}}ller and
Jean Yee Hwa Yang},
title = {bcGST - an interactive bias-correction method to identify over-represented
gene-sets in boutique arrays},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1350--1357},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty783},
doi = {10.1093/BIOINFORMATICS/BTY783},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMSWYWKSLTMY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangSWYTYLXZ19,
author = {Yangzhen Wang and
Feng Su and
Shanshan Wang and
Chaojuan Yang and
Yonglu Tian and
Peijiang Yuan and
Xiaorong Liu and
Wei Xiong and
Chen Zhang},
title = {Efficient implementation of convolutional neural networks in the data
processing of two-photon in vivo imaging},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3208--3210},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz055},
doi = {10.1093/BIOINFORMATICS/BTZ055},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangSWYTYLXZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangTT19,
author = {Pei{-}Hua Wang and
Yi{-}shu Tu and
Yufeng J. Tseng},
title = {PgpRules: a decision tree based prediction server for P-glycoprotein
substrates and inhibitors},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4193--4195},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz213},
doi = {10.1093/BIOINFORMATICS/BTZ213},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangTT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangTT19a,
author = {Pei{-}Hua Wang and
Yi{-}shu Tu and
Yufeng J. Tseng},
title = {PgpRules: a decision tree based prediction server for P-glycoprotein
substrates and inhibitors},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4535},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz546},
doi = {10.1093/BIOINFORMATICS/BTZ546},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangTT19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangW19,
author = {Jun Wang and
Liangjiang Wang},
title = {Deep learning of the back-splicing code for circular {RNA} formation},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5235--5242},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz382},
doi = {10.1093/BIOINFORMATICS/BTZ382},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWAHY19,
author = {Ting{-}You Wang and
Li Wang and
Sk Kayum Alam and
Luke H. Hoeppner and
Rendong Yang},
title = {ScanNeo: identifying indel-derived neoantigens using RNA-Seq data},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4159--4161},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz193},
doi = {10.1093/BIOINFORMATICS/BTZ193},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWAHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWLLWLKZH19,
author = {Zhe Wang and
Xuwen Wang and
Youyong Li and
Tailong Lei and
Ercheng Wang and
Dan Li and
Yu Kang and
Feng Zhu and
Tingjun Hou},
title = {farPPI: a webserver for accurate prediction of protein-ligand binding
structures for small-molecule {PPI} inhibitors by {MM/PB(GB)SA} methods},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1777--1779},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty879},
doi = {10.1093/BIOINFORMATICS/BTY879},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWLLWLKZH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWLSZ19,
author = {Ziye Wang and
Zhengyang Wang and
Yang Young Lu and
Fengzhu Sun and
Shanfeng Zhu},
title = {SolidBin: improving metagenome binning with semi-supervised normalized
cut},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4229--4238},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz253},
doi = {10.1093/BIOINFORMATICS/BTZ253},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWLSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWZLWGXZLRLG19,
author = {Huiyuan Wang and
Huihui Wang and
Hangxiao Zhang and
Sheng Liu and
Yongsheng Wang and
Yubang Gao and
Feihu Xi and
Liangzhen Zhao and
Bo Liu and
Anireddy S. N. Reddy and
Chentao Lin and
Lian{-}Feng Gu},
title = {The interplay between microRNA and alternative splicing of linear
and circular RNAs in eleven plant species},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3119--3126},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz038},
doi = {10.1093/BIOINFORMATICS/BTZ038},
timestamp = {Fri, 17 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWZLWGXZLRLG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangX19,
author = {Meiyue Wang and
Shizhong Xu},
title = {A coordinate descent approach for sparse Bayesian learning in high
dimensional {QTL} mapping and genome-wide association studies},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4327--4335},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz244},
doi = {10.1093/BIOINFORMATICS/BTZ244},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYLYWXCBWABM19,
author = {Guangyu Wang and
Hongyan Yin and
Boyang Li and
Chunlei Yu and
Fan Wang and
Xingjian Xu and
Jiabao Cao and
Yiming Bao and
Liguo Wang and
Amir Ali Abbasi and
Vladimir B. Bajic and
Lina Ma and
Zhang Zhang},
title = {Characterization and identification of long non-coding RNAs based
on feature relationship},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2949--2956},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz008},
doi = {10.1093/BIOINFORMATICS/BTZ008},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYLYWXCBWABM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYMCLM19,
author = {Xiaoying Wang and
Bin Yu and
Anjun Ma and
Cheng Chen and
Bingqiang Liu and
Qin Ma},
title = {Protein-protein interaction sites prediction by ensemble random forests
with synthetic minority oversampling technique},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2395--2402},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty995},
doi = {10.1093/BIOINFORMATICS/BTY995},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYMCLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZRZZSLH19,
author = {Xuan Wang and
Yu Zhang and
Xiang Ren and
Yuhao Zhang and
Marinka Zitnik and
Jingbo Shang and
Curtis P. Langlotz and
Jiawei Han},
title = {Cross-type biomedical named entity recognition with deep multi-task
learning},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1745--1752},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty869},
doi = {10.1093/BIOINFORMATICS/BTY869},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZRZZSLH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WardSDWM19,
author = {Max Ward and
Hongying Sun and
Amitava Datta and
Michael J. Wise and
David H. Mathews},
title = {Determining parameters for non-linear models of multi-loop free energy
change},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4298--4306},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz222},
doi = {10.1093/BIOINFORMATICS/BTZ222},
timestamp = {Fri, 16 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WardSDWM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WarrenCMZJIJBBB19,
author = {Ren{\'{e}} L. Warren and
Lauren Coombe and
Hamid Mohamadi and
Jessica Zhang and
Barry Jaquish and
Nathalie Isabel and
Steven J. M. Jones and
Jean Bousquet and
J{\"{o}}rg Bohlmann and
Inan{\c{c}} Birol},
title = {ntEdit: scalable genome sequence polishing},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4430--4432},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz400},
doi = {10.1093/BIOINFORMATICS/BTZ400},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WarrenCMZJIJBBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WarrenderML19,
author = {Jennifer D. Warrender and
Anthony V. Moorman and
Phillip Lord},
title = {A fully computational and reasonable representation for karyotypes},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5264--5270},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz440},
doi = {10.1093/BIOINFORMATICS/BTZ440},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WarrenderML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WatsonCTW19,
author = {Oliver P. Watson and
Isidro Cortes{-}Ciriano and
Aimee R. Taylor and
James A. Watson},
title = {A decision-theoretic approach to the evaluation of machine learning
algorithms in computational drug discovery},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4656--4663},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz293},
doi = {10.1093/BIOINFORMATICS/BTZ293},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WatsonCTW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WattsRIH19,
author = {Stephen C. Watts and
Scott C. Ritchie and
Michael Inouye and
Kathryn E. Holt},
title = {FastSpar: rapid and scalable correlation estimation for compositional
data},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1064--1066},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty734},
doi = {10.1093/BIOINFORMATICS/BTY734},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WattsRIH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiLNSZ19,
author = {Leyi Wei and
Shasha Luan and
Luis Augusto Eijy Nagai and
Ran Su and
Quan Zou},
title = {Exploring sequence-based features for the improved prediction of {DNA}
N4-methylcytosine sites in multiple species},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1326--1333},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty824},
doi = {10.1093/BIOINFORMATICS/BTY824},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiLNSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiSLLMZS19,
author = {Leyi Wei and
Ran Su and
Shasha Luan and
Zhijun Liao and
Balachandran Manavalan and
Quan Zou and
Xiaolong Shi},
title = {Iterative feature representations improve N4-methylcytosine site prediction},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4930--4937},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz408},
doi = {10.1093/BIOINFORMATICS/BTZ408},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiSLLMZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiZSZ19,
author = {Leyi Wei and
Chen Zhou and
Ran Su and
Quan Zou},
title = {PEPred-Suite: improved and robust prediction of therapeutic peptides
using adaptive feature representation learning},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4272--4280},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz246},
doi = {10.1093/BIOINFORMATICS/BTZ246},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiZSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeichenbergerRP19,
author = {Christian X. Weichenberger and
Johannes Rainer and
Cristian Pattaro and
Peter P. Pramstaller and
Francisco S. Domingues},
title = {Comparative assessment of different familial aggregation methods in
the context of large and unstructured pedigrees},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {69--76},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty541},
doi = {10.1093/BIOINFORMATICS/BTY541},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeichenbergerRP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeishauptJSLONS19,
author = {Holger Weishaupt and
Patrik Johansson and
Anders Sundstr{\"{o}}m and
Zelmina Lubovac{-}Pilav and
Bj{\"{o}}rn Olsson and
Sven Nelander and
Fredrik J. Swartling},
title = {Batch-normalization of cerebellar and medulloblastoma gene expression
datasets utilizing empirically defined negative control genes},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3357--3364},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz066},
doi = {10.1093/BIOINFORMATICS/BTZ066},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeishauptJSLONS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenHTH19,
author = {Zeyu Wen and
Jiahua He and
Huanyu Tao and
Sheng{-}You Huang},
title = {PepBDB: a comprehensive structural database of biological peptide-protein
interactions},
journal = {Bioinform.},
volume = {35},
number = {1},
pages = {175--177},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty579},
doi = {10.1093/BIOINFORMATICS/BTY579},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenHTH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhiteheadMWB19,
author = {Michael J. Whitehead and
George A. McCanney and
Hugh J. Willison and
Susan C. Barnett},
title = {MyelinJ: an ImageJ macro for high throughput analysis of myelinating
cultures},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4528--4530},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz403},
doi = {10.1093/BIOINFORMATICS/BTZ403},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhiteheadMWB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiegreffeASZ19,
author = {Daniel Wiegreffe and
Daniel Alexander and
Peter F. Stadler and
Dirk Zeckzer},
title = {RNApuzzler: efficient outerplanar drawing of RNA-secondary structures},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1342--1349},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty817},
doi = {10.1093/BIOINFORMATICS/BTY817},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiegreffeASZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiesnerSMK19,
author = {David Wiesner and
David Svoboda and
Martin Maska and
Michal Kozubek},
title = {CytoPacq: a web-interface for simulating multi-dimensional cell imaging},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4531--4533},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz417},
doi = {10.1093/BIOINFORMATICS/BTZ417},
timestamp = {Fri, 04 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiesnerSMK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiewiorkaLSSBOG19,
author = {Marek S. Wiewi{\'{o}}rka and
Anna Lesniewska and
Agnieszka Szmurlo and
Kacper Stepien and
Mateusz Borowiak and
Michal J. Okoniewski and
Tomasz Gambin},
title = {SeQuiLa: an elastic, fast and scalable SQL-oriented solution for processing
and querying genomic intervals},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2156--2158},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty940},
doi = {10.1093/BIOINFORMATICS/BTY940},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiewiorkaLSSBOG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wilkinson19,
author = {Shaun P. Wilkinson},
title = {aphid: an {R} package for analysis with profile hidden Markov models},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3829--3830},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz159},
doi = {10.1093/BIOINFORMATICS/BTZ159},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wilkinson19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilsonWCSPA19,
author = {Jennifer L. Wilson and
Mike Wong and
Ajinkya Chalke and
Nicholas Stepanov and
Dragutin Petkovic and
Russ B. Altman},
title = {PathFXweb: a web application for identifying drug safety and efficacy
phenotypes},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4504--4506},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz419},
doi = {10.1093/BIOINFORMATICS/BTZ419},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WilsonWCSPA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiltonWSS19,
author = {Richard Wilton and
Sarah J. Wheelan and
Alexander S. Szalay and
Steven L. Salzberg},
title = {The Terabase Search Engine: a large-scale relational database of short-read
sequences},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {665--670},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty657},
doi = {10.1093/BIOINFORMATICS/BTY657},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiltonWSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WindelsMP19,
author = {Sam F. L. Windels and
No{\"{e}}l Malod{-}Dognin and
Natasa Przulj},
title = {Graphlet Laplacians for topology-function and topology-disease relationships},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5226--5234},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz455},
doi = {10.1093/BIOINFORMATICS/BTZ455},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WindelsMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WojcikowskiKSS19,
author = {Maciej W{\'{o}}jcikowski and
Michal Kukielka and
Marta M. Stepniewska{-}Dziubinska and
Pawel Siedlecki},
title = {Development of a protein-ligand extended connectivity {(PLEC)} fingerprint
and its application for binding affinity predictions},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1334--1341},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty757},
doi = {10.1093/BIOINFORMATICS/BTY757},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WojcikowskiKSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongGRKLTLD19,
author = {Wing Ki Wong and
Guy Georges and
Francesca Ros and
Sebastian Kelm and
Alan P. Lewis and
Bruck Taddese and
Jinwoo Leem and
Charlotte M. Deane},
title = {{SCALOP:} sequence-based antibody canonical loop structure annotation},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1774--1776},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty877},
doi = {10.1093/BIOINFORMATICS/BTY877},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongGRKLTLD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongS19,
author = {Wai Yee Wong and
Oleg Simakov},
title = {RepeatCraft: a meta-pipeline for repetitive element de-fragmentation
and annotation},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1051--1052},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty745},
doi = {10.1093/BIOINFORMATICS/BTY745},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WredeH19,
author = {Fredrik Wrede and
Andreas Hellander},
title = {Smart computational exploration of stochastic gene regulatory network
models using human-in-the-loop semi-supervised learning},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5199--5206},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz420},
doi = {10.1093/BIOINFORMATICS/BTZ420},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WredeH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WrenVK19,
author = {Jonathan D. Wren and
Alfonso Valencia and
Janet Kelso},
title = {Reviewer-coerced citation: case report, update on journal policy and
suggestions for future prevention},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3217--3218},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz071},
doi = {10.1093/BIOINFORMATICS/BTZ071},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WrenVK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuGGZ19,
author = {Peng Wu and
Yan Gao and
Weilong Guo and
Ping Zhu},
title = {Using local alignment to enhance single-cell bisulfite sequencing
data efficiency},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3273--3278},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz125},
doi = {10.1093/BIOINFORMATICS/BTZ125},
timestamp = {Thu, 08 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuGGZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLCWPHYKZ19,
author = {Jiansheng Wu and
Ben Liu and
Wallace K. B. Chan and
Weijian Wu and
Tao Pang and
Haifeng Hu and
Shancheng Yan and
Xiaoyan Ke and
Yang Zhang},
title = {Precise modelling and interpretation of bioactivities of ligands targeting
{G} protein-coupled receptors},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i324--i332},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz336},
doi = {10.1093/BIOINFORMATICS/BTZ336},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuLCWPHYKZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuP19,
author = {Chong Wu and
Wei Pan},
title = {Integration of methylation {QTL} and enhancer-target gene maps with
schizophrenia {GWAS} summary results identifies novel genes},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3576--3583},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz161},
doi = {10.1093/BIOINFORMATICS/BTZ161},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuWCSKVR19,
author = {Yingzhou Wu and
Jochen Weile and
Atina G. Cot{\'{e}} and
Song Sun and
Jennifer J. Knapp and
Marta Verby and
Frederick P. Roth},
title = {A web application and service for imputing and visualizing missense
variant effect maps},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3191--3193},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz012},
doi = {10.1093/BIOINFORMATICS/BTZ012},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuWCSKVR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WylieHZ19,
author = {Dennis C. Wylie and
Hans A. Hofmann and
Boris V. Zemelman},
title = {SArKS: de novo discovery of gene expression regulatory motif sites
and domains by suffix array kernel smoothing},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3944--3952},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz198},
doi = {10.1093/BIOINFORMATICS/BTZ198},
timestamp = {Fri, 29 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WylieHZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WymanM19,
author = {Dana Wyman and
Ali Mortazavi},
title = {TranscriptClean: variant-aware correction of indels, mismatches and
splice junctions in long-read transcripts},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {340--342},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty483},
doi = {10.1093/BIOINFORMATICS/BTY483},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WymanM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/X19,
title = {{ISMB/ECCB} 2019 {PROCEEDINGS} {PAPERS} {COMMITTEE}},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i3},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz494},
doi = {10.1093/BIOINFORMATICS/BTZ494},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/X19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/X19a,
title = {Author Index},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i643--i644},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz510},
doi = {10.1093/BIOINFORMATICS/BTZ510},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/X19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaLZLHCG19,
author = {Zhihao Xia and
Yu Li and
Bin Zhang and
Zhongxiao Li and
Yuhui Hu and
Wei Chen and
Xin Gao},
title = {DeeReCT-PolyA: a robust and generic deep learning method for {PAS}
identification},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2371--2379},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty991},
doi = {10.1093/BIOINFORMATICS/BTY991},
timestamp = {Thu, 02 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaLZLHCG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoLHNXCAZ19,
author = {Feifei Xiao and
Xizhi Luo and
Ning Hao and
Yue Niu and
Xiangjun Xiao and
Guoshuai Cai and
Christopher I. Amos and
Heping Zhang},
title = {An accurate and powerful method for copy number variation detection},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2891--2898},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1041},
doi = {10.1093/BIOINFORMATICS/BTY1041},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoLHNXCAZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieLCLHH19,
author = {Changchun Xie and
Yuet{-}Kin Leung and
Aimin Chen and
Ding{-}Xin Long and
Catherine Hoyo and
Shuk{-}Mei Ho},
title = {Differential methylation values in differential methylation analysis},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1094--1097},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty778},
doi = {10.1093/BIOINFORMATICS/BTY778},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieLCLHH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieZQXLLLMMZDDL19,
author = {Shengsong Xie and
Qin Zhu and
Wubin Qu and
Zhong Xu and
Xiangdong Liu and
Xinyun Li and
Shijun Li and
Wubin Ma and
Yiliang Miao and
Lisheng Zhang and
Xiaoyong Du and
Wuzi Dong and
Haiwei Li and
Changzhi Zhao and
Yunlong Wang and
Yaping Fang and
Shuhong Zhao},
title = {sRNAPrimerDB: comprehensive primer design and search web service for
small non-coding RNAs},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1566--1572},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty852},
doi = {10.1093/BIOINFORMATICS/BTY852},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieZQXLLLMMZDDL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuFYQCL19,
author = {Zhao{-}Chun Xu and
Peng{-}Mian Feng and
Hui Yang and
Wangren Qiu and
Wei Chen and
Hao Lin},
title = {iRNAD: a computational tool for identifying {D} modification sites
in {RNA} sequence},
journal = {Bioinform.},
volume = {35},
number = {23},
pages = {4922--4929},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz358},
doi = {10.1093/BIOINFORMATICS/BTZ358},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuFYQCL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuGPWPDW19,
author = {Chang Xu and
Xiujing Gu and
Raghavendra Padmanabhan and
Zhong Wu and
Quan Peng and
John DiCarlo and
Yexun Wang},
title = {smCounter2: an accurate low-frequency variant caller for targeted
sequencing data with unique molecular identifiers},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1299--1309},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty790},
doi = {10.1093/BIOINFORMATICS/BTY790},
timestamp = {Mon, 14 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuGPWPDW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuanCZWPS19,
author = {Ping Xuan and
Yangkun Cao and
Tiangang Zhang and
Xiao Wang and
Shuxiang Pan and
Tonghui Shen},
title = {Drug repositioning through integration of prior knowledge and projections
of drugs and diseases},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4108--4119},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz182},
doi = {10.1093/BIOINFORMATICS/BTZ182},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuanCZWPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XueTCL19,
author = {Li Xue and
Bin Tang and
Wei Chen and
Jiesi Luo},
title = {DeepT3: deep convolutional neural networks accurately identify Gram-negative
bacterial type {III} secreted effectors using the N-terminal sequence},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2051--2057},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty931},
doi = {10.1093/BIOINFORMATICS/BTY931},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XueTCL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XueYLB19,
author = {Albert Y. Xue and
Angela M. Yu and
Julius B. Lucks and
Neda Bagheri},
title = {{DUETT} quantitatively identifies known and novel events in nascent
{RNA} structural dynamics from chemical probing data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5103--5112},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz449},
doi = {10.1093/BIOINFORMATICS/BTZ449},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XueYLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XunJYWZ19,
author = {Guangxu Xun and
Kishlay Jha and
Ye Yuan and
Yaqing Wang and
Aidong Zhang},
title = {MeSHProbeNet: a self-attentive probe net for MeSH indexing},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3794--3802},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz142},
doi = {10.1093/BIOINFORMATICS/BTZ142},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XunJYWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YamadaLFPM19,
author = {Naomi Yamada and
William K. M. Lai and
Nina Farrell and
B. Franklin Pugh and
Shaun Mahony},
title = {Characterizing protein-DNA binding event subtypes in ChIP-exo data},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {903--913},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty703},
doi = {10.1093/BIOINFORMATICS/BTY703},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YamadaLFPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanFB19,
author = {Melissa Y. Yan and
Betsy Ferguson and
Benjamin N. Bimber},
title = {VariantQC: a visual quality control report for variant evaluation},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5370--5371},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz560},
doi = {10.1093/BIOINFORMATICS/BTZ560},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanFXL19,
author = {Ke Yan and
Xiaozhao Fang and
Yong Xu and
Bin Liu},
title = {Protein fold recognition based on multi-view modeling},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2982--2990},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz040},
doi = {10.1093/BIOINFORMATICS/BTZ040},
timestamp = {Mon, 13 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanFXL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanLB19,
author = {Zichao Yan and
Eric L{\'{e}}cuyer and
Mathieu Blanchette},
title = {Prediction of mRNA subcellular localization using deep recurrent neural
networks},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i333--i342},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz337},
doi = {10.1093/BIOINFORMATICS/BTZ337},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangCWWJZZCL19,
author = {Hai Yang and
Rui Chen and
Quan Wang and
Qiang Wei and
Ying Ji and
Guangze Zheng and
Xue Zhong and
Nancy J. Cox and
Bingshan Li},
title = {De novo pattern discovery enables robust assessment of functional
consequences of non-coding variants},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1453--1460},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty826},
doi = {10.1093/BIOINFORMATICS/BTY826},
timestamp = {Mon, 15 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangCWWJZZCL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangCZZH19,
author = {Hao Yang and
Hao Chi and
Wen{-}Feng Zeng and
Wen{-}Jing Zhou and
Si{-}Min He},
title = {pNovo 3: precise de novo peptide sequencing using a learning-to-rank
framework},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i183--i190},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz366},
doi = {10.1093/BIOINFORMATICS/BTZ366},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangCZZH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangHCLLL19,
author = {Yuchen Yang and
Ruth Huh and
Houston W. Culpepper and
Yuan Lin and
Michael I. Love and
Yun Li},
title = {SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering
for single-cell RNA-seq data},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1269--1277},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty793},
doi = {10.1093/BIOINFORMATICS/BTY793},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangHCLLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLLGW19,
author = {Jianghong Yang and
Ao Li and
Yongqiang Li and
Xiangqian Guo and
Minghui Wang},
title = {A novel approach for drug response prediction in cancer cell lines
via network representation learning},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1527--1535},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty848},
doi = {10.1093/BIOINFORMATICS/BTY848},
timestamp = {Fri, 06 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLLGW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLLLAZ19,
author = {He{-}Chuan Yang and
Bingxin Lu and
Lan Huong Lai and
Abner Herbert Lim and
Jacob Josiah Santiago Alvarez and
Weiwei Zhai},
title = {PSiTE: a Phylogeny guided Simulator for Tumor Evolution},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3148--3150},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz028},
doi = {10.1093/BIOINFORMATICS/BTZ028},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLLLAZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLLW19,
author = {Mengyun Yang and
Huimin Luo and
Yaohang Li and
Jianxin Wang},
title = {Drug repositioning based on bounded nuclear norm regularization},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i455--i463},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz331},
doi = {10.1093/BIOINFORMATICS/BTZ331},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLSLCWLLT19,
author = {Hongbin Yang and
Chaofeng Lou and
Lixia Sun and
Jie Li and
Yingchun Cai and
Zhuang Wang and
Weihua Li and
Guixia Liu and
Yun Tang},
title = {admetSAR 2.0: web-service for prediction and optimization of chemical
{ADMET} properties},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1067--1069},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty707},
doi = {10.1093/BIOINFORMATICS/BTY707},
timestamp = {Tue, 27 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLSLCWLLT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLZWG19,
author = {Zhi{-}Kai Yang and
Hao Luo and
Yanming Zhang and
Baijing Wang and
Feng Gao},
title = {Pan-genomic analysis provides novel insights into the association
of E.coli with human host and its minimal genome},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {1987--1991},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty938},
doi = {10.1093/BIOINFORMATICS/BTY938},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLZWG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangM19,
author = {Zi Yang and
George Michailidis},
title = {Quantifying heterogeneity of expression data based on principal components},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {553--559},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty671},
doi = {10.1093/BIOINFORMATICS/BTY671},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangSRKSSLPDH19,
author = {Xiao Yang and
Yasushi Saito and
Arjun A. Rao and
Hyunsung John Kim and
Pranav Singh and
Eric Scott and
Matthew Larson and
Wenying Pan and
Mohini Desai and
Earl Hubbell},
title = {Alignment-free filtering for cfNA fusion fragments},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i225--i232},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz346},
doi = {10.1093/BIOINFORMATICS/BTZ346},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangSRKSSLPDH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWLCZL19,
author = {Can Yang and
Xiang Wan and
Xinyi Lin and
Mengjie Chen and
Xiang Zhou and
Jin Liu},
title = {CoMM: a collaborative mixed model to dissecting genetic contributions
to complex traits by leveraging regulatory information},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1644--1652},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty865},
doi = {10.1093/BIOINFORMATICS/BTY865},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangWLCZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWWWPCSCZC19,
author = {Yang Yang and
Timothy M. Walker and
A. Sarah Walker and
Daniel J. Wilson and
Timothy E. A Peto and
Derrick W. Crook and
Farah Shamout and
CRyPTIC Consortium and
Tingting Zhu and
David A. Clifton},
title = {DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3240--3249},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz067},
doi = {10.1093/BIOINFORMATICS/BTZ067},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangWWWPCSCZC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangZFS19,
author = {Yang Yang and
Mingyu Zhou and
Qingwei Fang and
Hong{-}Bin Shen},
title = {AnnoFly: annotating Drosophila embryonic images based on an attention-enhanced
{RNN} model},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2834--2842},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1064},
doi = {10.1093/BIOINFORMATICS/BTY1064},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangZFS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YaoHZT19,
author = {Wen Yao and
Fangfang Huang and
Xuehai Zhang and
Jihua Tang},
title = {{ECOGEMS:} efficient compression and retrieve of {SNP} data of 2058
rice accessions with integer sparse matrices},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4181--4183},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz186},
doi = {10.1093/BIOINFORMATICS/BTZ186},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YaoHZT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YazbeckSTF19,
author = {Ali M. Yazbeck and
Peter F. Stadler and
Kifah Tout and
J{\"{o}}rg Fallmann},
title = {Automatic curation of large comparative animal MicroRNA datasets},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4553--4559},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz271},
doi = {10.1093/BIOINFORMATICS/BTZ271},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YazbeckSTF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeSS19,
author = {Chengzhong Ye and
Terence P. Speed and
Agus Salim},
title = {{DECENT:} differential expression with capture efficiency adjustmeNT
for single-cell RNA-seq data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5155--5162},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz453},
doi = {10.1093/BIOINFORMATICS/BTZ453},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YiTZG19,
author = {Nengjun Yi and
Zaixiang Tang and
Xinyan Zhang and
Boyi Guo},
title = {BhGLM: Bayesian hierarchical GLMs and survival models, with applications
to genomics and epidemiology},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1419--1421},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty803},
doi = {10.1093/BIOINFORMATICS/BTY803},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YiTZG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YinBSDBVS19,
author = {Bojian Yin and
Marleen Balvert and
Rick A. A. van der Spek and
Bas E. Dutilh and
Sander M. Boht{\'{e}} and
Jan Veldink and
Alexander Sch{\"{o}}nhuth},
title = {Using the structure of genome data in the design of deep neural networks
for predicting amyotrophic lateral sclerosis from genotype},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i538--i547},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz369},
doi = {10.1093/BIOINFORMATICS/BTZ369},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YinBSDBVS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YinZM19,
author = {John Yin and
Chao Zhang and
Siavash Mirarab},
title = {{ASTRAL-MP:} scaling {ASTRAL} to very large datasets using randomization
and parallelization},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {3961--3969},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz211},
doi = {10.1093/BIOINFORMATICS/BTZ211},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YinZM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YousefAA19,
author = {Malik Yousef and
Loai AbdAllah and
Jens Allmer},
title = {maTE: discovering expressed interactions between microRNAs and their
targets},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4020--4028},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz204},
doi = {10.1093/BIOINFORMATICS/BTZ204},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YousefAA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuLJL19,
author = {Hua Yu and
Lu Lu and
Bingke Jiao and
Chengzhi Liang},
title = {Systematic discovery of novel and valuable plant gene modules by large-scale
RNA-seq samples},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {361--364},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty642},
doi = {10.1093/BIOINFORMATICS/BTY642},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLJL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuSZCC19,
author = {Jialin Yu and
Shaoping Shi and
Fang Zhang and
Guodong Chen and
Man Cao},
title = {PredGly: predicting lysine glycation sites for Homo sapiens based
on XGboost feature optimization},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2749--2756},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1043},
doi = {10.1093/BIOINFORMATICS/BTY1043},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuSZCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuZZ19,
author = {Yun Yu and
Lei{-}Hong Zhang and
Shuqin Zhang},
title = {Simultaneous clustering of multiview biomedical data using manifold
optimization},
journal = {Bioinform.},
volume = {35},
number = {20},
pages = {4029--4037},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz217},
doi = {10.1093/BIOINFORMATICS/BTZ217},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanCWHZJ19,
author = {Hao Yuan and
Lei Cai and
Zhengyang Wang and
Xia Hu and
Shaoting Zhang and
Shuiwang Ji},
title = {Computational modeling of cellular structures using conditional deep
generative networks},
journal = {Bioinform.},
volume = {35},
number = {12},
pages = {2141--2149},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty923},
doi = {10.1093/BIOINFORMATICS/BTY923},
timestamp = {Mon, 02 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanCWHZJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanHD19,
author = {Huili Yuan and
Shun He and
Minghua Deng},
title = {Compositional data network analysis via lasso penalized D-trace loss},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3404--3411},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz098},
doi = {10.1093/BIOINFORMATICS/BTZ098},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanHD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanTDLCZTCH19,
author = {Le Yuan and
Yu Tian and
Shaozhen Ding and
Yanfang Liu and
Fu Chen and
Tong Zhang and
Weizhong Tu and
Junni Chen and
Qian{-}Nan Hu},
title = {PrecursorFinder: a customized biosynthetic precursor explorer},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1603--1604},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty838},
doi = {10.1093/BIOINFORMATICS/BTY838},
timestamp = {Tue, 14 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanTDLCZTCH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanZWS19,
author = {Jie Yuan and
Jiajian Zhou and
Huating Wang and
Hao Sun},
title = {SKmDB: an integrated database of next generation sequencing information
in skeletal muscle},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {847--855},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty705},
doi = {10.1093/BIOINFORMATICS/BTY705},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanZWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YueL19,
author = {Jia{-}Xing Yue and
Gianni Liti},
title = {simuG: a general-purpose genome simulator},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4442--4444},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz424},
doi = {10.1093/BIOINFORMATICS/BTZ424},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YueL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YunesB19,
author = {Jeffrey M. Yunes and
Patricia C. Babbitt},
title = {Effusion: prediction of protein function from sequence similarity
networks},
journal = {Bioinform.},
volume = {35},
number = {3},
pages = {442--451},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty672},
doi = {10.1093/BIOINFORMATICS/BTY672},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YunesB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengG19,
author = {Biao Zeng and
Greg Gibson},
title = {PolyQTL: Bayesian multiple eQTL detection with control for population
structure and sample relatedness},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1061--1063},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty728},
doi = {10.1093/BIOINFORMATICS/BTY728},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengG19a,
author = {Haoyang Zeng and
David K. Gifford},
title = {DeepLigand: accurate prediction of {MHC} class {I} ligands using peptide
embedding},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i278--i283},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz330},
doi = {10.1093/BIOINFORMATICS/BTZ330},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengG19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengZLZNC19,
author = {Xiangxiang Zeng and
Siyi Zhu and
Xiangrong Liu and
Yadi Zhou and
Ruth Nussinov and
Feixiong Cheng},
title = {deepDR: a network-based deep learning approach to in silico drug repositioning},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5191--5198},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz418},
doi = {10.1093/BIOINFORMATICS/BTZ418},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengZLZNC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangDXHY19,
author = {Chi Zhang and
Shan{-}Shan Dong and
Jun{-}Yang Xu and
Wei{-}Ming He and
Tie{-}Lin Yang},
title = {PopLDdecay: a fast and effective tool for linkage disequilibrium decay
analysis based on variant call format files},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1786--1788},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty875},
doi = {10.1093/BIOINFORMATICS/BTY875},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangDXHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangK19,
author = {Jian Zhang and
Lukasz A. Kurgan},
title = {{SCRIBER:} accurate and partner type-specific prediction of protein-binding
residues from proteins sequences},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i343--i353},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz324},
doi = {10.1093/BIOINFORMATICS/BTZ324},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLCSSL19,
author = {Jikai Zhang and
Haidong Lan and
Yuandong Chan and
Yuan Shang and
Bertil Schmidt and
Weiguo Liu},
title = {{BGSA:} a bit-parallel global sequence alignment toolkit for multi-core
and many-core architectures},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2306--2308},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty930},
doi = {10.1093/BIOINFORMATICS/BTY930},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLCSSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLCYYZYXNGJ19,
author = {Yang Zhang and
Tianyuan Liu and
Liqun Chen and
Jinxurong Yang and
Jiayi Yin and
Yuncong Zhang and
Zhixi Yun and
Hao Xu and
Lin Ning and
Feng{-}Biao Guo and
Yongshuai Jiang and
Hao Lin and
Dong Wang and
Yan Huang and
Jian Huang},
title = {RIscoper: a tool for {RNA-RNA} interaction extraction from the literature},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3199--3202},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz044},
doi = {10.1093/BIOINFORMATICS/BTZ044},
timestamp = {Thu, 29 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLCYYZYXNGJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLLW19,
author = {Shixiong Zhang and
Xiangtao Li and
Qiuzhen Lin and
Ka{-}Chun Wong},
title = {Synergizing CRISPR/Cas9 off-target predictions for ensemble insights
and practical applications},
journal = {Bioinform.},
volume = {35},
number = {7},
pages = {1108--1115},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty748},
doi = {10.1093/BIOINFORMATICS/BTY748},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLMLFKCSJ19,
author = {Meng Zhang and
Fuyi Li and
Tatiana T. Marquez{-}Lago and
Andr{\'{e}} Leier and
Cunshuo Fan and
Chee Keong Kwoh and
Kuo{-}Chen Chou and
Jiangning Song and
Cangzhi Jia},
title = {MULTiPly: a novel multi-layer predictor for discovering general and
specific types of promoters},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2957--2965},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz016},
doi = {10.1093/BIOINFORMATICS/BTZ016},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLMLFKCSJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLYXXX19,
author = {Minzhe Zhang and
Sangin Lee and
Bo Yao and
Guanghua Xiao and
Lin Xu and
Yang Xie},
title = {{DIGREM:} an integrated web-based platform for detecting effective
multi-drug combinations},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1792--1794},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty860},
doi = {10.1093/BIOINFORMATICS/BTY860},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLYXXX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangMI19,
author = {Wei Zhang and
Jianzhu Ma and
Trey Ideker},
title = {Classifying tumors by supervised network propagation},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {2528},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1072},
doi = {10.1093/BIOINFORMATICS/BTY1072},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangMI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangMKHS19,
author = {Yi Zhang and
Mohith Manjunath and
Yeonsung Kim and
Joerg Heintz and
Jun S. Song},
title = {SequencEnG: an interactive knowledge base of sequencing techniques},
journal = {Bioinform.},
volume = {35},
number = {8},
pages = {1438--1440},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty794},
doi = {10.1093/BIOINFORMATICS/BTY794},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangMKHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangOYHY19,
author = {Xiao{-}Fei Zhang and
Le Ou{-}Yang and
Shuo Yang and
Xiaohua Hu and
Hong Yan},
title = {DiffNetFDR: differential network analysis with false discovery rate
control},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3184--3186},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz051},
doi = {10.1093/BIOINFORMATICS/BTZ051},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangOYHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangOYZHY19,
author = {Xiao{-}Fei Zhang and
Le Ou{-}Yang and
Shuo Yang and
Xing{-}Ming Zhao and
Xiaohua Hu and
Hong Yan},
title = {EnImpute: imputing dropout events in single-cell RNA-sequencing data
via ensemble learning},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4827--4829},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz435},
doi = {10.1093/BIOINFORMATICS/BTZ435},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangOYZHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangS19,
author = {Yuqi Zhang and
Michel F. Sanner},
title = {AutoDock CrankPep: combining folding and docking to predict protein-peptide
complexes},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5121--5127},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz459},
doi = {10.1093/BIOINFORMATICS/BTZ459},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangTJLGNHXDZZ19,
author = {Yuwei Zhang and
Yang Tao and
Huihui Ji and
Wei Li and
Xingli Guo and
Derry Minyao Ng and
Maria Haleem and
Yang Xi and
Changzheng Dong and
Jinshun Zhao and
Lina Zhang and
Xiaohong Zhang and
Yangyang Xie and
Xiaoyu Dai and
Qi Liao},
title = {Genome-wide identification of the essential protein-coding genes and
long non-coding RNAs for human pan-cancer},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4344--4349},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz230},
doi = {10.1093/BIOINFORMATICS/BTZ230},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangTJLGNHXDZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZBX19,
author = {He Zhang and
Xiaowei Zhan and
James Brugarolas and
Yang Xie},
title = {{DEFOR:} depth- and frequency-based somatic copy number alteration
detector},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3824--3825},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz170},
doi = {10.1093/BIOINFORMATICS/BTZ170},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZBX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZCCXTWGGTX19,
author = {Zheng Zhang and
Zhaozhong Zhu and
Wenjun Chen and
Zena Cai and
Beibei Xu and
Zhiying Tan and
Aiping Wu and
Xingyi Ge and
Xinhong Guo and
Zhongyang Tan and
Zanxian Xia and
Haizhen Zhu and
Taijiao Jiang and
Yousong Peng},
title = {Cell membrane proteins with high N-glycosylation, high expression
and multiple interaction partners are preferred by mammalian viruses
as receptors},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {723--728},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty694},
doi = {10.1093/BIOINFORMATICS/BTY694},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZCCXTWGGTX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZFZMH19,
author = {Song{-}Yao Zhang and
Shao{-}Wu Zhang and
Xiao{-}Nan Fan and
Teng Zhang and
Jia Meng and
Yufei Huang},
title = {FunDMDeep-m6A: identification and prioritization of functional differential
m6A methylation genes},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i90--i98},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz316},
doi = {10.1093/BIOINFORMATICS/BTZ316},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZFZMH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
retrieved on 2024-04-25 19:22 CEST from data curated by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
