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@article{DBLP:journals/biomedsem/AgibetovJOSBGCO18,
author = {Asan Agibetov and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Marta Ondresik and
Alessandro Solimando and
Imon Banerjee and
Giovanna Guerrini and
Chiara Eva Catalano and
Joaquim Miguel Oliveira and
Giuseppe Patan{\`{e}} and
Rui Lu{\'{\i}}s Reis and
Michela Spagnuolo},
title = {Supporting shared hypothesis testing in the biomedical domain},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {9:1--9:22},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0177-x},
doi = {10.1186/S13326-018-0177-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/AgibetovJOSBGCO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/AmithT18,
author = {Muhammad Amith and
Cui Tao},
title = {Representing vaccine misinformation using ontologies},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {22:1--22:13},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0190-0},
doi = {10.1186/S13326-018-0190-0},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/AmithT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BarrosDR18,
author = {Joana M. Barros and
Jim Duggan and
Dietrich Rebholz{-}Schuhmann},
title = {Disease mentions in airport and hospital geolocations expose dominance
of news events for disease concerns},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {18:1--18:11},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0186-9},
doi = {10.1186/S13326-018-0186-9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/BarrosDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CasteleiroDRPMM18,
author = {Mercedes Arg{\"{u}}ello Casteleiro and
George Demetriou and
Warren J. Read and
Maria Jesus Fernandez Prieto and
Nava Maroto and
Diego Maseda{-}Fernandez and
Goran Nenadic and
Julie Klein and
John A. Keane and
Robert Stevens},
title = {Deep learning meets ontologies: experiments to anchor the cardiovascular
disease ontology in the biomedical literature},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {13:1--13:24},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0181-1},
doi = {10.1186/S13326-018-0181-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/CasteleiroDRPMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Chandrasekarasastry18,
author = {Nagesh Panyam Chandrasekarasastry and
Karin Verspoor and
Trevor Cohn and
Kotagiri Ramamohanarao},
title = {Exploiting graph kernels for high performance biomedical relation
extraction},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {7:1--7:11},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0168-3},
doi = {10.1186/S13326-017-0168-3},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/Chandrasekarasastry18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/El-SappaghKAK18,
author = {Shaker H. Ali El{-}Sappagh and
Daehan Kwak and
Farman Ali and
Kyung Sup Kwak},
title = {{DMTO:} a realistic ontology for standard diabetes mellitus treatment},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {8:1--8:30},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0176-y},
doi = {10.1186/S13326-018-0176-Y},
timestamp = {Sun, 30 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/El-SappaghKAK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/FariaPMMCC18,
author = {Daniel Faria and
Catia Pesquita and
Isabela Mott and
Catarina Martins and
Francisco M. Couto and
Isabel F. Cruz},
title = {Tackling the challenges of matching biomedical ontologies},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {4:1--4:19},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0170-9},
doi = {10.1186/S13326-017-0170-9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/FariaPMMCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HeXZLOO18,
author = {Yongqun He and
Zuoshuang Xiang and
Jie Zheng and
Yu Lin and
James A. Overton and
Edison Ong},
title = {The eXtensible ontology development {(XOD)} principles and tool implementation
to support ontology interoperability},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {3:1--3:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0169-2},
doi = {10.1186/S13326-017-0169-2},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HeXZLOO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HurOH18,
author = {Junguk Hur and
Arzucan {\"{O}}zg{\"{u}}r and
Yongqun He},
title = {Ontology-based literature mining and class effect analysis of adverse
drug reactions associated with neuropathy-inducing drugs},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {17:1--17:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0185-x},
doi = {10.1186/S13326-018-0185-X},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HurOH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JudkinsTBB18,
author = {John Judkins and
Jessica Tay{-}Sontheimer and
Richard D. Boyce and
Mathias Brochhausen},
title = {Extending the {DIDEO} ontology to include entities from the natural
product drug interaction domain of discourse},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {15:1--15:9},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0183-z},
doi = {10.1186/S13326-018-0183-Z},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/JudkinsTBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KolyvakisKSK18,
author = {Prodromos Kolyvakis and
Alexandros Kalousis and
Barry Smith and
Dimitris Kiritsis},
title = {Biomedical ontology alignment: an approach based on representation
learning},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {21:1--21:20},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0187-8},
doi = {10.1186/S13326-018-0187-8},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KolyvakisKSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KropfUSKDH18,
author = {Stefan Kropf and
Alexandr Uciteli and
Katrin Schierle and
Peter Kr{\"{u}}cken and
Kerstin Denecke and
Heinrich Herre},
title = {Querying archetype-based EHRs by search ontology-based XPath engineering},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {16:1--16:14},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0180-2},
doi = {10.1186/S13326-018-0180-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/KropfUSKDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MatentzogluMMS18,
author = {Nicolas Matentzoglu and
James Malone and
Chris Mungall and
Robert Stevens},
title = {{MIRO:} guidelines for minimum information for the reporting of an
ontology},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {6:1--6:13},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0172-7},
doi = {10.1186/S13326-017-0172-7},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MatentzogluMMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Metke-JimenezSH18,
author = {Alejandro Metke{-}Jimenez and
Jim Steel and
David P. Hansen and
Michael Lawley},
title = {Ontoserver: a syndicated terminology server},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {24:1--24:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0191-z},
doi = {10.1186/S13326-018-0191-Z},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Metke-JimenezSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/NeveolDVSZ18,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Hercules Dalianis and
Sumithra Velupillai and
Guergana Savova and
Pierre Zweigenbaum},
title = {Clinical Natural Language Processing in languages other than English:
opportunities and challenges},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {12:1--12:13},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0179-8},
doi = {10.1186/S13326-018-0179-8},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/NeveolDVSZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/OliveiraP18,
author = {Daniela Oliveira and
Catia Pesquita},
title = {Improving the interoperability of biomedical ontologies with compound
alignments},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {1:1--1:13},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0171-8},
doi = {10.1186/S13326-017-0171-8},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/OliveiraP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/OsborneNDSB18,
author = {John David Osborne and
Matthew B. Neu and
Maria I. Danila and
Thamar Solorio and
Steven J. Bethard},
title = {{CUILESS2016:} a clinical corpus applying compositional normalization
of text mentions},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {2:1--2:9},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0173-6},
doi = {10.1186/S13326-017-0173-6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/OsborneNDSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Osumi-Sutherland18,
author = {David Osumi{-}Sutherland and
Enrico Ponta and
M{\'{e}}lanie Courtot and
Helen E. Parkinson and
Laura Badi},
title = {Using {OWL} reasoning to support the generation of novel gene sets
for enrichment analysis},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {10:1--10:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0175-z},
doi = {10.1186/S13326-018-0175-Z},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Osumi-Sutherland18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/RindfleschBCFZK18,
author = {Thomas C. Rindflesch and
Catherine Blake and
Michael J. Cairelli and
Marcelo Fiszman and
Caroline J. Zeiss and
Halil Kilicoglu},
title = {Investigating the role of interleukin-1 beta and glutamate in inflammatory
bowel disease and epilepsy using discovery browsing},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {25:1--25:14},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0192-y},
doi = {10.1186/S13326-018-0192-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/RindfleschBCFZK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SenderovSFSCASM18,
author = {Viktor Senderov and
Kiril Simov and
Nico M. Franz and
Pavel Stoev and
Terry Catapano and
Donat Agosti and
Guido Sautter and
Robert A. Morris and
Lyubomir Penev},
title = {OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {5:1--5:15},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0174-5},
doi = {10.1186/S13326-017-0174-5},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/SenderovSFSCASM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ShenCTYL18,
author = {Ying Shen and
Daoyuan Chen and
Buzhou Tang and
Min Yang and
Kai Lei},
title = {{EAPB:} entropy-aware path-based metric for ontology quality},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {20:1--20:11},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0188-7},
doi = {10.1186/S13326-018-0188-7},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ShenCTYL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SolovievaSFN18,
author = {Elena Solovieva and
Toshihide Shikanai and
Noriaki Fujita and
Hisashi Narimatsu},
title = {GGDonto ontology as a knowledge-base for genetic diseases and disorders
of glycan metabolism and their causative genes},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {14:1--14:14},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0182-0},
doi = {10.1186/S13326-018-0182-0},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SolovievaSFN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VlietstraVSMK18,
author = {Wytze J. Vlietstra and
Rein Vos and
Anneke M. Sijbers and
Erik M. van Mulligen and
Jan A. Kors},
title = {Using predicate and provenance information from a knowledge graph
for drug efficacy screening},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {23:1--23:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0189-6},
doi = {10.1186/S13326-018-0189-6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/VlietstraVSMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WangZYZ18,
author = {Junxiang Wang and
Liang Zhao and
Yanfang Ye and
Yuji Zhang},
title = {Adverse event detection by integrating twitter data and {VAERS}},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {19:1--19:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0184-y},
doi = {10.1186/S13326-018-0184-Y},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WangZYZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhaoZLC18,
author = {Mengyi Zhao and
Songmao Zhang and
Weizhuo Li and
Guowei Chen},
title = {Matching biomedical ontologies based on formal concept analysis},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {11:1--11:27},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0178-9},
doi = {10.1186/S13326-018-0178-9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ZhaoZLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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