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@article{DBLP:journals/jcamd/AbdoGAP20,
  author       = {Ammar Abdo and
                  Eissa Ghaleb and
                  Naser K. A. Alajmi and
                  Maude Pupin},
  title        = {Monomer structure fingerprints: an extension of the monomer composition
                  version for peptide databases},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1147--1156},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00336-8},
  doi          = {10.1007/S10822-020-00336-8},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/AbdoGAP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/AghazadehKRB20,
  author       = {Hossein Aghazadeh and
                  Mokhtar Ganjali Koli and
                  Reza Ranjbar and
                  Kamran Pooshang Bagheri},
  title        = {Interactions of {GF-17} derived from {LL-37} antimicrobial peptide
                  with bacterial membranes: a molecular dynamics simulation study},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1261--1273},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00348-4},
  doi          = {10.1007/S10822-020-00348-4},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/AghazadehKRB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ArifAAFLY20,
  author       = {Muhammad Arif and
                  Saeed Ahmad and
                  Farman Ali and
                  Ge Fang and
                  Min Li and
                  Dong{-}Jun Yu},
  title        = {TargetCPP: accurate prediction of cell-penetrating peptides from optimized
                  multi-scale features using gradient boost decision tree},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {841--856},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00307-z},
  doi          = {10.1007/S10822-020-00307-Z},
  timestamp    = {Sun, 30 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/ArifAAFLY20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ArslanFA20,
  author       = {Evrim Arslan and
                  Basak Koca Findik and
                  Viktorya Aviyente},
  title        = {A blind {SAMPL6} challenge: insight into the octanol-water partition
                  coefficients of drug-like molecules via a {DFT} approach},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {463--470},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00284-3},
  doi          = {10.1007/S10822-020-00284-3},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/ArslanFA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/AshidaK20,
  author       = {Takeshi Ashida and
                  Takeshi Kikuchi},
  title        = {A new method for estimating the relative binding free energy, derived
                  from a free energy variational principle for the Pim-1-kinase-ligand
                  and FKBP-ligand systems},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {647--658},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00302-4},
  doi          = {10.1007/S10822-020-00302-4},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/AshidaK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/AtanasioDR20,
  author       = {Silvia Atanasio and
                  Giuseppe Deganutti and
                  Christopher A. Reynolds},
  title        = {Addressing free fatty acid receptor 1 {(FFAR1)} activation using supervised
                  molecular dynamics},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1181--1193},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00338-6},
  doi          = {10.1007/S10822-020-00338-6},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/AtanasioDR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BasciuKMBV20,
  author       = {Andrea Basciu and
                  Panagiotis I. Koukos and
                  Giuliano Malloci and
                  Alexandre M. J. J. Bonvin and
                  Attilio Vittorio Vargiu},
  title        = {Coupling enhanced sampling of the apo-receptor with template-based
                  ligand conformers selection: performance in pose prediction in the
                  {D3R} Grand Challenge 4},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {149--162},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00244-6},
  doi          = {10.1007/S10822-019-00244-6},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BasciuKMBV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BaumgartnerE20,
  author       = {Matthew P. Baumgartner and
                  David A. Evans},
  title        = {Side chain virtual screening of matched molecular pairs: a PDB-wide
                  and ChEMBL-wide analysis},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {953--963},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00313-1},
  doi          = {10.1007/S10822-020-00313-1},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BaumgartnerE20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BelgamoAPRRTCF20,
  author       = {Juli{\'{a}}n A. B{\'{e}}lgamo and
                  Lucas N. Alberca and
                  Jorge L. P{\'{o}}rfido and
                  Franco N. Caram Romero and
                  Santiago Rodriguez and
                  Alan Talevi and
                  Betina C{\'{o}}rsico and
                  Gisela R. Franchini},
  title        = {Application of target repositioning and in silico screening to exploit
                  fatty acid binding proteins (FABPs) from Echinococcus multilocularis
                  as possible drug targets},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1275--1288},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00352-8},
  doi          = {10.1007/S10822-020-00352-8},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BelgamoAPRRTCF20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BelloGR20,
  author       = {Martiniano Bello and
                  Concepci{\'{o}}n Guadarrama{-}Garc{\'{\i}}a and
                  Rolando Alberto Rodriguez{-}Fonseca},
  title        = {Dissecting the molecular recognition of dual lapatinib derivatives
                  for {EGFR/HER2}},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {293--303},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00270-4},
  doi          = {10.1007/S10822-019-00270-4},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BelloGR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BorioniCPMPPG20,
  author       = {Jos{\'{e}} L. Borioni and
                  Valeria Cavallaro and
                  Adriana B. Pierini and
                  Ana Paula Murray and
                  Alicia B. Pe{\~{n}}{\'{e}}{\~{n}}ory and
                  Marcelo Puiatti and
                  Manuela E. Garc{\'{\i}}a},
  title        = {An activity prediction model for steroidal and triterpenoidal inhibitors
                  of Acetylcholinesterase enzyme},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1079--1090},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00324-y},
  doi          = {10.1007/S10822-020-00324-Y},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BorioniCPMPPG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BrownELLRS20,
  author       = {Nathan Brown and
                  Peter Ertl and
                  Richard A. Lewis and
                  Torsten Luksch and
                  Daniel Reker and
                  Nadine Schneider},
  title        = {Artificial intelligence in chemistry and drug design},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {709--715},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00317-x},
  doi          = {10.1007/S10822-020-00317-X},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BrownELLRS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BufanoLBLNSBC20,
  author       = {Marianna Bufano and
                  Marion Laudette and
                  Jean{-}Paul Blondeau and
                  Frank Lezoualc'h and
                  Marianna Nalli and
                  Romano Silvestri and
                  Andrea Brancale and
                  Antonio Coluccia},
  title        = {Modeling Epac1 interactions with the allosteric inhibitor {AM-001}
                  by co-solvent molecular dynamics},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1171--1179},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00332-y},
  doi          = {10.1007/S10822-020-00332-Y},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BufanoLBLNSBC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/CharoenkwanNHS20,
  author       = {Phasit Charoenkwan and
                  Chanin Nantasenamat and
                  Md. Mehedi Hasan and
                  Watshara Shoombuatong},
  title        = {Meta-iPVP: a sequence-based meta-predictor for improving the prediction
                  of phage virion proteins using effective feature representation},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1105--1116},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00323-z},
  doi          = {10.1007/S10822-020-00323-Z},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/CharoenkwanNHS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ChenWSPY20,
  author       = {Jianzhong Chen and
                  Wei Wang and
                  Haibo Sun and
                  Laixue Pang and
                  Baohua Yin},
  title        = {Mutation-mediated influences on binding of anaplastic lymphoma kinase
                  to crizotinib decoded by multiple replica Gaussian accelerated molecular
                  dynamics},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1289--1305},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00355-5},
  doi          = {10.1007/S10822-020-00355-5},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/ChenWSPY20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ClarkMCLPRLFGGW20,
  author       = {Robert D. Clark and
                  Denise N. Morris and
                  Gary Chinigo and
                  Michael S. Lawless and
                  Jacques Prudhomme and
                  Karine G. Le Roch and
                  Maria Jos{\'{e}} Lafuente and
                  Santiago Ferrer and
                  Francisco Javier Gamo and
                  Robert Gadwood and
                  Walter S. Woltosz},
  title        = {Design and tests of prospective property predictions for novel antimalarial
                  2-aminopropylaminoquinolones},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1117--1132},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00333-x},
  doi          = {10.1007/S10822-020-00333-X},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/ClarkMCLPRLFGGW20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ColodetteFMFSB20,
  author       = {Natalie M. Colodette and
                  Lucas S. Franco and
                  Rodolfo C. Maia and
                  Harold H. Fokoue and
                  Carlos Mauricio R. Sant'Anna and
                  Eliezer J. Barreiro},
  title        = {Novel phosphatidylinositol 4-kinases {III} beta (PI4KIII{\(\beta\)})
                  inhibitors discovered by virtual screening using free energy models},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1091--1103},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00327-9},
  doi          = {10.1007/S10822-020-00327-9},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/ColodetteFMFSB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/DingXQCZHSH20,
  author       = {Ye Ding and
                  You Xu and
                  Cheng Qian and
                  Jinfeng Chen and
                  Jian Zhu and
                  Houhou Huang and
                  Yi Shi and
                  Jing Huang},
  title        = {Predicting partition coefficients of drug-like molecules in the {SAMPL6}
                  challenge with Drude polarizable force fields},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {421--435},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00282-5},
  doi          = {10.1007/S10822-020-00282-5},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/DingXQCZHSH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/FanIB20,
  author       = {Shujie Fan and
                  Bogdan I. Iorga and
                  Oliver Beckstein},
  title        = {Prediction of octanol-water partition coefficients for the SAMPL6-log
                  {P} molecules using molecular dynamics simulations with OPLS-AA, {AMBER}
                  and {CHARMM} force fields},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {543--560},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00267-z},
  doi          = {10.1007/S10822-019-00267-Z},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/FanIB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GarciaTHG20,
  author       = {Gonzalo Cerruela Garc{\'{\i}}a and
                  Jos{\'{e}} P{\'{e}}rez{-}Parras Toledano and
                  Aida de Haro{-}Garc{\'{\i}}a and
                  Nicol{\'{a}}s Garc{\'{\i}}a{-}Pedrajas},
  title        = {Influence of feature rankers in the construction of molecular activity
                  prediction models},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {305--325},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00273-1},
  doi          = {10.1007/S10822-019-00273-1},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/GarciaTHG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GhiandoniBCHWWG20,
  author       = {Gian Marco Ghiandoni and
                  Michael J. Bodkin and
                  Beining Chen and
                  Dimitar Hristozov and
                  James E. A. Wallace and
                  James Webster and
                  Valerie J. Gillet},
  title        = {Enhancing reaction-based de novo design using a multi-label reaction
                  class recommender},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {783--803},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00300-6},
  doi          = {10.1007/S10822-020-00300-6},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/GhiandoniBCHWWG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GilsonA20,
  author       = {Michael K. Gilson and
                  Rommie E. Amaro},
  title        = {Drug Design Data Resource, Grand Challenge 4, second of two issues},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {97},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00296-z},
  doi          = {10.1007/S10822-020-00296-Z},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/GilsonA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GreenPLSMMBPM20,
  author       = {Darren V. S. Green and
                  Stephen D. Pickett and
                  Christopher N. Luscombe and
                  Stefan Senger and
                  David Marcus and
                  Jamel Meslamani and
                  David Brett and
                  Adam Powell and
                  Jonathan Masson},
  title        = {{BRADSHAW:} a system for automated molecular design},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {747--765},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00234-8},
  doi          = {10.1007/S10822-019-00234-8},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/GreenPLSMMBPM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GreenPLSMMBPM20a,
  author       = {Darren V. S. Green and
                  Stephen D. Pickett and
                  Christopher N. Luscombe and
                  Stefan Senger and
                  David Marcus and
                  Jamel Meslamani and
                  David Brett and
                  Adam Powell and
                  Jonathan Masson},
  title        = {Correction to: {BRADSHAW:} a system for automated molecular design},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {767},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00243-7},
  doi          = {10.1007/S10822-019-00243-7},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/GreenPLSMMBPM20a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GuanLM20,
  author       = {Davy Guan and
                  Raymond Lui and
                  Slade Matthews},
  title        = {LogP prediction performance with the {SMD} solvation model and the
                  {M06} density functional family for {SAMPL6} blind prediction challenge
                  molecules},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {511--522},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00278-1},
  doi          = {10.1007/S10822-020-00278-1},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/GuanLM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GunnerMRIC20,
  author       = {Marilyn R. Gunner and
                  Taichi Murakami and
                  Ari{\"{e}}n S. Rustenburg and
                  Mehtap Isik and
                  John D. Chodera},
  title        = {Standard state free energies, not pK\({}_{\mbox{a}}\)s, are ideal
                  for describing small molecule protonation and tautomeric states},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {561--573},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00280-7},
  doi          = {10.1007/S10822-020-00280-7},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/GunnerMRIC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/GureevNGVGT20,
  author       = {Maxim Gureev and
                  Daria Novikova and
                  Tatyana Grigoreva and
                  Svetlana Vorona and
                  Alexander Garabadzhiu and
                  Vyacheslav Tribulovich},
  title        = {Simulation of {MDM2} N-terminal domain conformational lability in
                  the presence of imidazoline based inhibitors of MDM2-p53 protein-protein
                  interaction},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {55--70},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00260-6},
  doi          = {10.1007/S10822-019-00260-6},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/GureevNGVGT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/HanpaiboolLTR20,
  author       = {Chonnikan Hanpaibool and
                  Matina Leelawiwat and
                  Kaito Takahashi and
                  Thanyada Rungrotmongkol},
  title        = {Source of oseltamivir resistance due to single {E119D} and double
                  {E119D/H274Y} mutations in pdm09H1N1 influenza neuraminidase},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {27--37},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00251-7},
  doi          = {10.1007/S10822-019-00251-7},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/HanpaiboolLTR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/HuB20,
  author       = {Huabin Hu and
                  J{\"{u}}rgen Bajorath},
  title        = {Simplified activity cliff network representations with high interpretability
                  and immediate access to {SAR} information},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {943--952},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00319-9},
  doi          = {10.1007/S10822-020-00319-9},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/HuB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/IsikBFRCM20,
  author       = {Mehtap Isik and
                  Teresa Danielle Bergazin and
                  Thomas Fox and
                  Andrea Rizzi and
                  John D. Chodera and
                  David L. Mobley},
  title        = {Assessing the accuracy of octanol-water partition coefficient predictions
                  in the {SAMPL6} Part {II} log {P} Challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {335--370},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00295-0},
  doi          = {10.1007/S10822-020-00295-0},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/IsikBFRCM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/IsikLMRC20,
  author       = {Mehtap Isik and
                  Dorothy Levorse and
                  David L. Mobley and
                  Timothy Rhodes and
                  John D. Chodera},
  title        = {Octanol-water partition coefficient measurements for the {SAMPL6}
                  blind prediction challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {405--420},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00271-3},
  doi          = {10.1007/S10822-019-00271-3},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/IsikLMRC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/JonesB20,
  author       = {Michael R. Jones and
                  Bernard R. Brooks},
  title        = {Quantum chemical predictions of water-octanol partition coefficients
                  applied to the {SAMPL6} logP blind challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {485--493},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00286-1},
  doi          = {10.1007/S10822-020-00286-1},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/JonesB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KadukovaCG20,
  author       = {Maria Kadukova and
                  Vladimir Chupin and
                  Sergei Grudinin},
  title        = {Docking rigid macrocycles using Convex-PL, AutoDock Vina, and RDKit
                  in the {D3R} Grand Challenge 4},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {191--200},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00263-3},
  doi          = {10.1007/S10822-019-00263-3},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/KadukovaCG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KhannaMDP20,
  author       = {Vikram Khanna and
                  Jacob I. Monroe and
                  Michael F. Doherty and
                  Baron Peters},
  title        = {Performing solvation free energy calculations in {LAMMPS} using the
                  decoupling approach},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {641--646},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00303-3},
  doi          = {10.1007/S10822-020-00303-3},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KhannaMDP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KhatunHSK20,
  author       = {Mst. Shamima Khatun and
                  Md. Mehedi Hasan and
                  Watshara Shoombuatong and
                  Hiroyuki Kurata},
  title        = {ProIn-Fuse: improved and robust prediction of proinflammatory peptides
                  by fusing of multiple feature representations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1229--1236},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00343-9},
  doi          = {10.1007/S10822-020-00343-9},
  timestamp    = {Wed, 07 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KhatunHSK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KotelnikovALIPB20,
  author       = {Sergei Kotelnikov and
                  Andrey Alekseenko and
                  Cong Liu and
                  Mikhail Ignatov and
                  Dzmitry Padhorny and
                  Emiliano Brini and
                  Mark Lukin and
                  Evangelos A. Coutsias and
                  Ken A. Dill and
                  Dima Kozakov},
  title        = {Sampling and refinement protocols for template-based macrocycle docking:
                  2018 {D3R} Grand Challenge 4},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {179--189},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00257-1},
  doi          = {10.1007/S10822-019-00257-1},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KotelnikovALIPB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KovarSPMSBKZB20,
  author       = {Petr Kov{\'{a}}r and
                  Jakub Skoda and
                  Miroslav Posp{\'{\i}}sil and
                  Kl{\'{a}}ra Mel{\'{a}}nov{\'{a}} and
                  Jan Svoboda and
                  Ludv{\'{\i}}k Benes and
                  Petr Kut{\'{a}}lek and
                  V{\'{\i}}tezslav Zima and
                  Filip Bures},
  title        = {How N-(pyridin-4-yl)pyridin-4-amine and its methyl and nitro derivatives
                  are arranged in the interlayer space of zirconium sulfophenylphosphonate:
                  a problem solved by experimental and calculation methods},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {683--695},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00299-w},
  doi          = {10.1007/S10822-020-00299-W},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KovarSPMSBKZB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KramerHJB20,
  author       = {Andreas Kr{\"{a}}mer and
                  Phillip S. Hudson and
                  Michael R. Jones and
                  Bernard R. Brooks},
  title        = {Multi-phase Boltzmann weighting: accounting for local inhomogeneity
                  in molecular simulations of water-octanol partition coefficients in
                  the {SAMPL6} challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {471--483},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00285-2},
  doi          = {10.1007/S10822-020-00285-2},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KramerHJB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KuderMKK20,
  author       = {Kamil J. Kuder and
                  Ilona Michalik and
                  Katarzyna Kiec{-}Kononowicz and
                  Peter Kolb},
  title        = {A Taxicab geometry quantification system to evaluate the performance
                  of in silico methods: a case study on adenosine receptors ligands},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {697--707},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00301-5},
  doi          = {10.1007/S10822-020-00301-5},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KuderMKK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LansPCC20,
  author       = {Isaias Lans and
                  Karen Palacio{-}Rodr{\'{\i}}guez and
                  Claudio N. Cavasotto and
                  Pilar Cossio},
  title        = {Flexi-pharma: a molecule-ranking strategy for virtual screening using
                  pharmacophores from ligand-free conformational ensembles},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1063--1077},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00329-7},
  doi          = {10.1007/S10822-020-00329-7},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/LansPCC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LinBHMV20,
  author       = {Arkadii I. Lin and
                  Bernd Beck and
                  Dragos Horvath and
                  Gilles Marcou and
                  Alexandre Varnek},
  title        = {Diversifying chemical libraries with generative topographic mapping},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {805--815},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00215-x},
  doi          = {10.1007/S10822-019-00215-X},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/LinBHMV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LiuK20,
  author       = {Kai Liu and
                  Hironori Kokubo},
  title        = {Prediction of ligand binding mode among multiple cross-docking poses
                  by molecular dynamics simulations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1195--1205},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00340-y},
  doi          = {10.1007/S10822-020-00340-Y},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/LiuK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Lopez-LopezROM20,
  author       = {Edgar L{\'{o}}pez{-}L{\'{o}}pez and
                  Obdulia Rabal and
                  Julen Oyarzabal and
                  Jos{\'{e}} L. Medina{-}Franco},
  title        = {Towards the understanding of the activity of G9a inhibitors: an activity
                  landscape and molecular modeling approach},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {659--669},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00298-x},
  doi          = {10.1007/S10822-020-00298-X},
  timestamp    = {Tue, 16 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/Lopez-LopezROM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LoschenRK20,
  author       = {Christoph Loschen and
                  Jens Reinisch and
                  Andreas Klamt},
  title        = {{COSMO-RS} based predictions for the {SAMPL6} logP challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {385--392},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00259-z},
  doi          = {10.1007/S10822-019-00259-Z},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/LoschenRK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LuiGM20,
  author       = {Raymond Lui and
                  Davy Guan and
                  Slade Matthews},
  title        = {A comparison of molecular representations for lipophilicity quantitative
                  structure-property relationships with results from the {SAMPL6} logP
                  Prediction Challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {523--534},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00279-0},
  doi          = {10.1007/S10822-020-00279-0},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/LuiGM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/MagantiB20,
  author       = {Lakshmi Maganti and
                  Dhananjay Bhattacharyya},
  title        = {Sequence specificity in DNA-drug intercalation: {MD} simulation and
                  density functional theory approaches},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {83--95},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00268-y},
  doi          = {10.1007/S10822-019-00268-Y},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/MagantiB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/MakarovM20,
  author       = {G. I. Makarov and
                  T. M. Makarova},
  title        = {A noncanonical binding site of linezolid revealed via molecular dynamics
                  simulations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {281--291},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00269-x},
  doi          = {10.1007/S10822-019-00269-X},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/MakarovM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/MecklenfeldR20,
  author       = {Andreas Mecklenfeld and
                  Gabriele Raabe},
  title        = {Applicability of a thermodynamic cycle approach for a force field
                  parametrization targeting non-aqueous solvation free energies},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {71--82},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00261-5},
  doi          = {10.1007/S10822-019-00261-5},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/MecklenfeldR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/MiljkovicB20,
  author       = {Filip Miljkovic and
                  J{\"{u}}rgen Bajorath},
  title        = {Data structures for computational compound promiscuity analysis and
                  exemplary applications to inhibitors of the human kinome},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {1--10},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00266-0},
  doi          = {10.1007/S10822-019-00266-0},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/MiljkovicB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/MillsG20,
  author       = {Alberto Mills and
                  Federico Gago},
  title        = {Atomistic insight into sequence-directed {DNA} bending and minicircle
                  formation propensity in the absence and presence of phased A-tracts},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {253--265},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00288-z},
  doi          = {10.1007/S10822-020-00288-Z},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/MillsG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/NguyenGWW20,
  author       = {Duc Duy Nguyen and
                  Kaifu Gao and
                  Menglun Wang and
                  Guo{-}Wei Wei},
  title        = {MathDL: mathematical deep learning for {D3R} Grand Challenge 4},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {131--147},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00237-5},
  doi          = {10.1007/S10822-019-00237-5},
  timestamp    = {Mon, 01 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/NguyenGWW20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/NicolaKIA20,
  author       = {George Nicola and
                  Irina Kufareva and
                  Andrey V. Ilatovskiy and
                  Ruben Abagyan},
  title        = {Druggable exosites of the human kino-pocketome},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {219--230},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00276-y},
  doi          = {10.1007/S10822-019-00276-Y},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/NicolaKIA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Nikitin20,
  author       = {Alexei M. Nikitin},
  title        = {Non-zero Lennard-Jones parameters for the Toukan-Rahman water model:
                  more accurate calculations of the solvation free energy of organic
                  substances},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {437--441},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00256-2},
  doi          = {10.1007/S10822-019-00256-2},
  timestamp    = {Thu, 27 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/Nikitin20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/OlandersABK20,
  author       = {Gustav Olanders and
                  Hiba Alogheli and
                  Peter Brandt and
                  Anders Karl{\'{e}}n},
  title        = {Conformational analysis of macrocycles: comparing general and specialized
                  methods},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {231--252},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00277-2},
  doi          = {10.1007/S10822-020-00277-2},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/OlandersABK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/OlsonCCGJHALMK20,
  author       = {Brian Olson and
                  Anthony Cruz{-}Balberdy and
                  Lieyang Chen and
                  Mossa Ghattas and
                  Yeonji Ji and
                  Kunhui Huang and
                  Steven Ayoub and
                  Tyler Luchko and
                  Daniel J. McKay and
                  Tom Kurtzman},
  title        = {An online repository of solvation thermodynamic and structural maps
                  of SARS-CoV-2 targets},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1219--1228},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00341-x},
  doi          = {10.1007/S10822-020-00341-X},
  timestamp    = {Thu, 16 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/OlsonCCGJHALMK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/OuimetP20,
  author       = {Jonathan A. Ouimet and
                  Andrew S. Paluch},
  title        = {Predicting octanol/water partition coefficients for the {SAMPL6} challenge
                  using the SM12, SM8, and {SMD} solvation models},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {575--588},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00293-2},
  doi          = {10.1007/S10822-020-00293-2},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/OuimetP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/PaciottiACS20,
  author       = {Roberto Paciotti and
                  Mariangela Agamennone and
                  Cecilia Coletti and
                  Loriano Storchi},
  title        = {Characterization of {PD-L1} binding sites by a combined {FMO/GRID-DRY}
                  approach},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {897--914},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00306-0},
  doi          = {10.1007/S10822-020-00306-0},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/PaciottiACS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ParksGCYSWJMLBA20,
  author       = {Conor D. Parks and
                  Zied Gaieb and
                  Michael Chiu and
                  Huanwang Yang and
                  Chenghua Shao and
                  W. Patrick Walters and
                  Johanna M. Jansen and
                  Georgia B. McGaughey and
                  Richard A. Lewis and
                  Scott D. Bembenek and
                  Michael K. Ameriks and
                  Tara Mirzadegan and
                  Stephen K. Burley and
                  Rommie E. Amaro and
                  Michael K. Gilson},
  title        = {{D3R} grand challenge 4: blind prediction of protein-ligand poses,
                  affinity rankings, and relative binding free energies},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {99--119},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00289-y},
  doi          = {10.1007/S10822-020-00289-Y},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/ParksGCYSWJMLBA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/PatelKJBW20,
  author       = {Prajay Patel and
                  David M. Kuntz and
                  Michael R. Jones and
                  Bernard R. Brooks and
                  Angela K. Wilson},
  title        = {{SAMPL6} logP challenge: machine learning and quantum mechanical approaches},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {495--510},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00287-0},
  doi          = {10.1007/S10822-020-00287-0},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/PatelKJBW20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/PathakDBCS20,
  author       = {Bani Kumar Pathak and
                  Debajyoti Das and
                  Sayan Bhakta and
                  Partha Chakrabarti and
                  Jayati Sengupta},
  title        = {Resveratrol as a nontoxic excipient stabilizes insulin in a bioactive
                  hexameric form},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {915--927},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00311-3},
  doi          = {10.1007/S10822-020-00311-3},
  timestamp    = {Fri, 05 Nov 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/PathakDBCS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/PeronaRMMG20,
  author       = {Almudena Perona and
                  M. Piedad Ros and
                  Alberto Mills and
                  Antonio Morreale and
                  Federico Gago},
  title        = {Distinct binding of cetirizine enantiomers to human serum albumin
                  and the human histamine receptor H\({}_{\mbox{1}}\)},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1045--1062},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00328-8},
  doi          = {10.1007/S10822-020-00328-8},
  timestamp    = {Sun, 11 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/PeronaRMMG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/PrasadB20,
  author       = {Samarjeet Prasad and
                  Bernard R. Brooks},
  title        = {A deep learning approach for the blind logP prediction in {SAMPL6}
                  challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {535--542},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00292-3},
  doi          = {10.1007/S10822-020-00292-3},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/PrasadB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Procacci20,
  author       = {Piero Procacci},
  title        = {A remark on the efficiency of the double-system/single-box nonequilibrium
                  approach in the {SAMPL6} SAMPLing challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {635--639},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00312-2},
  doi          = {10.1007/S10822-020-00312-2},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/Procacci20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ProcacciG20,
  author       = {Piero Procacci and
                  Guido Guarnieri},
  title        = {{SAMPL6} blind predictions of water-octanol partition coefficients
                  using nonequilibrium alchemical approaches},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {371--384},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00233-9},
  doi          = {10.1007/S10822-019-00233-9},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/ProcacciG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RaczK20,
  author       = {Anita R{\'{a}}cz and
                  Gy{\"{o}}rgy M. Keser{\"{u}}},
  title        = {Large-scale evaluation of cytochrome {P450} 2C9 mediated drug interaction
                  potential with machine learning-based consensus modeling},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {831--839},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00308-y},
  doi          = {10.1007/S10822-020-00308-Y},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/RaczK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RajanR20,
  author       = {Ravi Kumar Rajan and
                  Muthiah Ramanathan},
  title        = {Identification and neuroprotective evaluation of a potential c-Jun
                  N-terminal kinase 3 inhibitor through structure-based virtual screening
                  and in-vitro assay},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {6},
  pages        = {671--682},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00297-y},
  doi          = {10.1007/S10822-020-00297-Y},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/RajanR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RedzepovicF20,
  author       = {Izudin Redzepovic and
                  Boris Furtula},
  title        = {Predictive potential of eigenvalue-based topological molecular descriptors},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {975--982},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00320-2},
  doi          = {10.1007/S10822-020-00320-2},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/RedzepovicF20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RiquelmeV20,
  author       = {Maximiliano Riquelme and
                  Esteban V{\"{o}}hringer{-}Martinez},
  title        = {{SAMPL6} Octanol-water partition coefficients from alchemical free
                  energy calculations with {MBIS} atomic charges},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {327--334},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00281-6},
  doi          = {10.1007/S10822-020-00281-6},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/RiquelmeV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RizziJSAGNBPHGC20,
  author       = {Andrea Rizzi and
                  Travis Jensen and
                  David R. Slochower and
                  Matteo Aldeghi and
                  Vytautas Gapsys and
                  Dimitris Ntekoumes and
                  Stefano Bosisio and
                  Michail Papadourakis and
                  Niel M. Henriksen and
                  Bert L. de Groot and
                  Zoe Cournia and
                  Alex Dickson and
                  Julien Michel and
                  Michael K. Gilson and
                  Michael R. Shirts and
                  David L. Mobley and
                  John D. Chodera},
  title        = {The {SAMPL6} SAMPLing challenge: assessing the reliability and efficiency
                  of binding free energy calculations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {601--633},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00290-5},
  doi          = {10.1007/S10822-020-00290-5},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/RizziJSAGNBPHGC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RobinsonGL20,
  author       = {Matthew C. Robinson and
                  Robert C. Glen and
                  Alpha A. Lee},
  title        = {Validating the validation: reanalyzing a large-scale comparison of
                  deep learning and machine learning models for bioactivity prediction},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {717--730},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00274-0},
  doi          = {10.1007/S10822-019-00274-0},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/RobinsonGL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Rodriguez-Perez20,
  author       = {Raquel Rodr{\'{\i}}guez{-}P{\'{e}}rez and
                  J{\"{u}}rgen Bajorath},
  title        = {Interpretation of machine learning models using shapley values: application
                  to compound potency and multi-target activity predictions},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1013--1026},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00314-0},
  doi          = {10.1007/S10822-020-00314-0},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/Rodriguez-Perez20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Sanchez-Marquez20,
  author       = {Jes{\'{u}}s S{\'{a}}nchez{-}M{\'{a}}rquez and
                  Victor Garc{\'{\i}}a and
                  David Zorrilla and
                  Manuel Fern{\'{a}}ndez},
  title        = {Software to obtain spatially localized functions from different radial
                  functions},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {267--280},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00272-2},
  doi          = {10.1007/S10822-019-00272-2},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/Sanchez-Marquez20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SarfarazML20,
  author       = {Sara Sarfaraz and
                  Iqra Muneer and
                  Haiyan Liu},
  title        = {Combining fragment docking with graph theory to improve ligand docking
                  for homology model structures},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1237--1259},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00345-7},
  doi          = {10.1007/S10822-020-00345-7},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/SarfarazML20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SasmalEM20,
  author       = {Sukanya Sasmal and
                  Lea El{-}Khoury and
                  David L. Mobley},
  title        = {{D3R} Grand Challenge 4: ligand similarity and MM-GBSA-based pose
                  prediction and affinity ranking for {BACE-1} inhibitors},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {163--177},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00249-1},
  doi          = {10.1007/S10822-019-00249-1},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/SasmalEM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Sixto-LopezBC20,
  author       = {Yudibeth Sixto{-}L{\'{o}}pez and
                  Martiniano Bello and
                  Jos{\'{e}} Correa{-}Basurto},
  title        = {Exploring the inhibitory activity of valproic acid against the {HDAC}
                  family using an {MMGBSA} approach},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {857--878},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00304-2},
  doi          = {10.1007/S10822-020-00304-2},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/Sixto-LopezBC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SoniBJ20,
  author       = {Anjali Soni and
                  Ruchika Bhat and
                  Bhyravabhotla Jayaram},
  title        = {Improving the binding affinity estimations of protein-ligand complexes
                  using machine-learning facilitated force field method},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {817--830},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00305-1},
  doi          = {10.1007/S10822-020-00305-1},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/SoniBJ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/StroganovNMDGSC20,
  author       = {Oleg V. Stroganov and
                  Fedor N. Novikov and
                  Michael G. Medvedev and
                  Artem O. Dmitrienko and
                  Igor S. Gerasimov and
                  Igor V. Svitanko and
                  Ghermes G. Chilov},
  title        = {The role of human in the loop: lessons from {D3R} challenge 4},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {121--130},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00291-4},
  doi          = {10.1007/S10822-020-00291-4},
  timestamp    = {Wed, 06 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/StroganovNMDGSC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/StumpfeHB20,
  author       = {Dagmar Stumpfe and
                  Huabin Hu and
                  J{\"{u}}rgen Bajorath},
  title        = {Advances in exploring activity cliffs},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {929--942},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00315-z},
  doi          = {10.1007/S10822-020-00315-Z},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/StumpfeHB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SunHLZ20,
  author       = {Zhaoxi Sun and
                  Qiao{-}Le He and
                  Xiao Li and
                  Zhengdan Zhu},
  title        = {{SAMPL6} host-guest binding affinities and binding poses from spherical-coordinates-biased
                  simulations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {5},
  pages        = {589--600},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00294-1},
  doi          = {10.1007/S10822-020-00294-1},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/SunHLZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SzwabowskiCSWCB20,
  author       = {Gregory L. Szwabowski and
                  Paige N. Castleman and
                  Chandler K. Sears and
                  Lee H. Wink and
                  Judith A. Cole and
                  Daniel L. Baker and
                  Abby L. Parrill},
  title        = {Benchmarking {GPCR} homology model template selection in combination
                  with de novo loop generation},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {10},
  pages        = {1027--1044},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00325-x},
  doi          = {10.1007/S10822-020-00325-X},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/SzwabowskiCSWCB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Thiruchittampalam20,
  author       = {Shalini Thiruchittampalam and
                  Samantha Weerasinghe},
  title        = {Plausible compounds drawn from plants as curative agents for neurodegeneration:
                  An in-silico approach},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {1003--1011},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00322-0},
  doi          = {10.1007/S10822-020-00322-0},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/Thiruchittampalam20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/TielkerTEGK20,
  author       = {Nicolas Tielker and
                  Daniel Tomazic and
                  Lukas Eberlein and
                  Stefan G{\"{u}}ssregen and
                  Stefan M. Kast},
  title        = {The {SAMPL6} challenge on predicting octanol-water partition coefficients
                  from {EC-RISM} theory},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {453--461},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00283-4},
  doi          = {10.1007/S10822-020-00283-4},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/TielkerTEGK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/TikhonovLYYZ20,
  author       = {Denis B. Tikhonov and
                  Lianyun Lin and
                  Daniel S. C. Yang and
                  Zhiguang Yuchi and
                  Boris S. Zhorov},
  title        = {Phenylalkylamines in calcium channels: computational analysis of experimental
                  structures},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1157--1169},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00330-0},
  doi          = {10.1007/S10822-020-00330-0},
  timestamp    = {Tue, 20 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/TikhonovLYYZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/TripathiSTTSSS20,
  author       = {Manish Kumar Tripathi and
                  Piyoosh Sharma and
                  Avanish Tripathi and
                  Prabhash Nath Tripathi and
                  Pavan Srivastava and
                  Ankit Seth and
                  Sushant Kumar Shrivastava},
  title        = {Computational exploration and experimental validation to identify
                  a dual inhibitor of cholinesterase and amyloid-beta for the treatment
                  of Alzheimer's disease},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {983--1002},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00318-w},
  doi          = {10.1007/S10822-020-00318-W},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/TripathiSTTSSS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/VangalaSPM20,
  author       = {Radhika Vangala and
                  Sree Kanth Sivan and
                  Saikiran Reddy Peddi and
                  Vijjulatha Manga},
  title        = {Computational design, synthesis and evaluation of new sulphonamide
                  derivatives targeting {HIV-1} gp120},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {39--54},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00258-0},
  doi          = {10.1007/S10822-019-00258-0},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/VangalaSPM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/WangN20,
  author       = {Bo Wang and
                  Ho{-}Leung Ng},
  title        = {Deep neural network affinity model for {BACE} inhibitors in {D3R}
                  Grand Challenge 4},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {2},
  pages        = {201--217},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00275-z},
  doi          = {10.1007/S10822-019-00275-Z},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/WangN20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/WangR20,
  author       = {Shuzhe Wang and
                  Sereina Riniker},
  title        = {Use of molecular dynamics fingerprints (MDFPs) in {SAMPL6} octanol-water
                  log {P} blind challenge},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {393--403},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00252-6},
  doi          = {10.1007/S10822-019-00252-6},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/WangR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/WangRZ20,
  author       = {Huiqun Wang and
                  Bethany A. Reinecke and
                  Yan Zhang},
  title        = {Computational insights into the molecular mechanisms of differentiated
                  allosteric modulation at the mu opioid receptor by structurally similar
                  bitopic modulators},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {8},
  pages        = {879--895},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00309-x},
  doi          = {10.1007/S10822-020-00309-X},
  timestamp    = {Tue, 13 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/WangRZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/WebelKRNNV20,
  author       = {Henry E. Webel and
                  Talia B. Kimber and
                  Silke Radetzki and
                  Martin Neuenschwander and
                  Marc Nazar{\'{e}} and
                  Andrea Volkamer},
  title        = {Revealing cytotoxic substructures in molecules using deep learning},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {731--746},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00310-4},
  doi          = {10.1007/S10822-020-00310-4},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/WebelKRNNV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/XiaKPT20,
  author       = {Zhonghua Xia and
                  Pavel Karpov and
                  Grzegorz M. Popowicz and
                  Igor V. Tetko},
  title        = {Focused Library Generator: case of Mdmx inhibitors},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {7},
  pages        = {769--782},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00242-8},
  doi          = {10.1007/S10822-019-00242-8},
  timestamp    = {Wed, 15 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/XiaKPT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/XuZCLSRLZC20,
  author       = {Xiaoqian Xu and
                  Li Zhang and
                  Ying Cai and
                  Dongxin Liu and
                  Zhengwen Shang and
                  Qiuhong Ren and
                  Qiong Li and
                  Weidong Zhao and
                  Yuhua Chen},
  title        = {Inhibitor discovery for the E. coli meningitis virulence factor IbeA
                  from homology modeling and virtual screening},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {1},
  pages        = {11--25},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00250-8},
  doi          = {10.1007/S10822-019-00250-8},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/XuZCLSRLZC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/YauEL20,
  author       = {Mei Qian Yau and
                  Abigail L. Emtage and
                  Jason S. E. Loo},
  title        = {Benchmarking the performance of {MM/PBSA} in virtual screening enrichment
                  using the GPCR-Bench dataset},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {11},
  pages        = {1133--1145},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00339-5},
  doi          = {10.1007/S10822-020-00339-5},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/YauEL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/YazarO20,
  author       = {Metin Yazar and
                  Pemra Ozbek},
  title        = {Revisiting allostery in CREB-binding protein {(CBP)} using residue-based
                  interaction energy},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {9},
  pages        = {965--974},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00316-y},
  doi          = {10.1007/S10822-020-00316-Y},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/YazarO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/YonchevB20,
  author       = {Dimitar G. Yonchev and
                  J{\"{u}}rgen Bajorath},
  title        = {DeepCOMO: from structure-activity relationship diagnostics to generative
                  molecular design using the compound optimization monitor methodology},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {12},
  pages        = {1207--1218},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-020-00349-3},
  doi          = {10.1007/S10822-020-00349-3},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/YonchevB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/ZamoraPGRCL20,
  author       = {William J. Zamora and
                  Silvana Pinheiro and
                  Kilian German and
                  Clara P{\'{e}}rez{-}R{\`{a}}fols and
                  Carles Curutchet and
                  F. Javier Luque},
  title        = {Prediction of the n-octanol/water partition coefficients in the {SAMPL6}
                  blind challenge from {MST} continuum solvation calculations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {4},
  pages        = {443--451},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00262-4},
  doi          = {10.1007/S10822-019-00262-4},
  timestamp    = {Mon, 25 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/ZamoraPGRCL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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