Search dblp for Publications

export results for "Sjoerd de Vries"

 download as .bib file

@article{DBLP:journals/bmcbi/KravchenkoVSB24,
  author       = {Anna Kravchenko and
                  Sjoerd Jacob de Vries and
                  Malika Sma{\"{\i}}l{-}Tabbone and
                  Isaure Chauvot de Beauch{\^{e}}ne},
  title        = {{HIPPO:} HIstogram-based Pseudo-POtential for scoring protein-ssRNA
                  fragment-based docking poses},
  journal      = {{BMC} Bioinform.},
  volume       = {25},
  number       = {1},
  pages        = {129},
  year         = {2024}
}
@article{DBLP:journals/corr/abs-2409-16071,
  author       = {Sjoerd de Vries and
                  Dirk Thierens},
  title        = {Learning with Confidence: Training Better Classifiers from Soft Labels},
  journal      = {CoRR},
  volume       = {abs/2409.16071},
  year         = {2024}
}
@article{DBLP:journals/jcisd/KaramiMGLDLLVT23,
  author       = {Yasaman Karami and
                  Samuel Murail and
                  Julien Giribaldi and
                  Benjamin Lefranc and
                  Florian Defontaine and
                  Olivier Lesouhaitier and
                  J{\'{e}}r{\^{o}}me Leprince and
                  Sjoerd Jacob de Vries and
                  Pierre Tuff{\'{e}}ry},
  title        = {Exploring a Structural Data Mining Approach to Design Linkers for
                  Head-to-Tail Peptide Cyclization},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {20},
  pages        = {6436--6450},
  year         = {2023}
}
@article{DBLP:journals/nar/ReyMVDT23,
  author       = {Julien Rey and
                  Samuel Murail and
                  Sjoerd Jacob de Vries and
                  Philippe Derreumaux and
                  Pierre Tuff{\'{e}}ry},
  title        = {{PEP-FOLD4:} a pH-dependent force field for peptide structure prediction
                  in aqueous solution},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{W1}},
  pages        = {432--437},
  year         = {2023}
}
@article{DBLP:journals/corr/abs-2309-04318,
  author       = {Sjoerd de Vries and
                  Dirk Thierens},
  title        = {Generating the Ground Truth: Synthetic Data for Label Noise Research},
  journal      = {CoRR},
  volume       = {abs/2309.04318},
  year         = {2023}
}
@article{DBLP:journals/bioinformatics/MoniotGVB22,
  author       = {Antoine Moniot and
                  Yann Guermeur and
                  Sjoerd Jacob de Vries and
                  Isaure Chauvot de Beauch{\^{e}}ne},
  title        = {ProtNAff: protein-bound Nucleic Acid filters and fragment libraries},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {16},
  pages        = {3911--3917},
  year         = {2022}
}
@article{DBLP:journals/cbm/VriesDTHLOTB22,
  author       = {Sjoerd de Vries and
                  Thijs ten Doesschate and
                  Joan E. E. Tott{\'{e}} and
                  Judith W. Heutz and
                  Yvette G. T. Loeffen and
                  Jan Jelrik Oosterheert and
                  Dirk Thierens and
                  Edwin Boel},
  title        = {A semi-supervised decision support system to facilitate antibiotic
                  stewardship for urinary tract infections},
  journal      = {Comput. Biol. Medicine},
  volume       = {146},
  pages        = {105621},
  year         = {2022}
}
@article{DBLP:journals/jtaer/SchrotenboerCHV22,
  author       = {Dana Schrotenboer and
                  Efthymios Constantinides and
                  Carolina Herrando and
                  Sjoerd de Vries},
  title        = {The Effects of Omni-Channel Retailing on Promotional Strategy},
  journal      = {J. Theor. Appl. Electron. Commer. Res.},
  volume       = {17},
  number       = {2},
  pages        = {360--374},
  year         = {2022}
}
@article{DBLP:journals/ijec/VollenbroekVD21,
  author       = {Wouter Vollenbroek and
                  Sjoerd de Vries and
                  Jan van Dijk},
  title        = {Supporting Social Capital by Utilizing Community Network Positions},
  journal      = {Int. J. e Collab.},
  volume       = {17},
  number       = {2},
  pages        = {40--54},
  year         = {2021}
}
@article{DBLP:journals/kbs/VriesT21,
  author       = {Sjoerd de Vries and
                  Dirk Thierens},
  title        = {A reliable ensemble based approach to semi-supervised learning},
  journal      = {Knowl. Based Syst.},
  volume       = {215},
  pages        = {106738},
  year         = {2021}
}
@article{DBLP:journals/nar/KaramiRPMTV19,
  author       = {Yasaman Karami and
                  Julien Rey and
                  Guillaume Postic and
                  Samuel Murail and
                  Pierre Tuff{\'{e}}ry and
                  Sjoerd Jacob de Vries},
  title        = {DaReUS-Loop: a web server to model multiple loops in homology models},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Webserver-Issue},
  pages        = {W423--W428},
  year         = {2019}
}
@inproceedings{DBLP:conf/ict4ageingwell/ReitsmaSV19,
  author       = {Auke Reitsma and
                  Ton Spil and
                  Sjoerd de Vries},
  title        = {Using Laddering to Understand the Use of Gamified Wearables by Seniors},
  booktitle    = {{ICT4AWE}},
  pages        = {92--103},
  publisher    = {SciTePress},
  year         = {2019}
}
@inproceedings{DBLP:conf/amcis/SchulzSV18,
  author       = {Luisa Schulz and
                  Ton Spil and
                  Sjoerd de Vries},
  title        = {Gamified Wearables in Obesity Therapy for Youth},
  booktitle    = {{AMCIS}},
  publisher    = {Association for Information Systems},
  year         = {2018}
}
@article{DBLP:journals/jcc/VriesZ17,
  author       = {Sjoerd Jacob de Vries and
                  Martin Zacharias},
  title        = {Fast and accurate grid representations for atom-based docking with
                  partner flexibility},
  journal      = {J. Comput. Chem.},
  volume       = {38},
  number       = {17},
  pages        = {1538--1546},
  year         = {2017}
}
@article{DBLP:journals/nar/VriesRSZT17,
  author       = {Sjoerd Jacob de Vries and
                  Julien Rey and
                  Christina E. M. Schindler and
                  Martin Zacharias and
                  Pierre Tuff{\'{e}}ry},
  title        = {The pepATTRACT web server for blind, large-scale peptide-protein docking},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Webserver-Issue},
  pages        = {W361--W364},
  year         = {2017}
}
@inproceedings{DBLP:conf/hci/BeldadAV17,
  author       = {Ardion Beldad and
                  Fitria Avicenna and
                  Sjoerd de Vries},
  title        = {The Effects of Online Review Message Appeal and Online Review Source
                  Across Two Product Types on Review Credibility, Product Attitude,
                  and Purchase Intention},
  booktitle    = {{HCI} {(24)}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10294},
  pages        = {163--173},
  publisher    = {Springer},
  year         = {2017}
}
@article{DBLP:journals/ploscb/BeaucheneVZ16,
  author       = {Isaure Chauvot de Beauch{\^{e}}ne and
                  Sjoerd Jacob de Vries and
                  Martin Zacharias},
  title        = {Binding Site Identification and Flexible Docking of Single Stranded
                  {RNA} to Proteins Using a Fragment-Based Approach},
  journal      = {PLoS Comput. Biol.},
  volume       = {12},
  number       = {1},
  year         = {2016}
}
@inproceedings{DBLP:conf/ic3k/VollenbroekV16,
  author       = {Wouter Vollenbroek and
                  Sjoerd de Vries},
  title        = {Interaction Patterns in Web-based Knowledge Communities: Two-Mode
                  Network Approach},
  booktitle    = {{KMIS}},
  pages        = {100--107},
  publisher    = {SciTePress},
  year         = {2016}
}
@article{DBLP:journals/ijwbc/VollenbroekVCK14,
  author       = {Wouter Vollenbroek and
                  Sjoerd de Vries and
                  Efthymios Constantinides and
                  Piet Kommers},
  title        = {Identification of influence in social media communities},
  journal      = {Int. J. Web Based Communities},
  volume       = {10},
  number       = {3},
  pages        = {280--297},
  year         = {2014}
}
@inproceedings{DBLP:conf/webist/VollenbroekCV13,
  author       = {Wouter Vollenbroek and
                  Efthymios Constantinides and
                  Sjoerd de Vries},
  title        = {Co-creation in Social Media Platforms: End-users as Innovation Partners
                  - Online Co-innovation within the Open Discovery Space},
  booktitle    = {{WEBIST}},
  pages        = {381--385},
  publisher    = {SciTePress},
  year         = {2013}
}
@article{DBLP:journals/grid/WassenaarDLSVSZBGFRBHJBJGSVDVVFKSFILSJVBPMFB12,
  author       = {Tsjerk A. Wassenaar and
                  Marc van Dijk and
                  Nuno Loureiro{-}Ferreira and
                  Gijs van der Schot and
                  Sjoerd Jacob de Vries and
                  Christophe Schmitz and
                  Johan van der Zwan and
                  Rolf Boelens and
                  Andrea Giachetti and
                  Lucio Ferella and
                  Antonio Rosato and
                  Ivano Bertini and
                  Torsten Herrmann and
                  Hendrik R. A. Jonker and
                  Anurag Bagaria and
                  Victor Jaravine and
                  Peter G{\"{u}}ntert and
                  Harald Schwalbe and
                  Wim F. Vranken and
                  Jurgen F. Doreleijers and
                  Gert Vriend and
                  Geerten W. Vuister and
                  Daniel Franke and
                  Alexey Kikhney and
                  Dmitri I. Svergun and
                  Rasmus H. Fogh and
                  John M. C. Ionides and
                  Ernest D. Laue and
                  Chris A. E. M. Spronk and
                  Simonas Jurksa and
                  Marco Verlato and
                  Simone Badoer and
                  Stefano Dal Pra and
                  Mirco Mazzucato and
                  Eric Frizziero and
                  Alexandre M. J. J. Bonvin},
  title        = {WeNMR: Structural Biology on the Grid},
  journal      = {J. Grid Comput.},
  volume       = {10},
  number       = {4},
  pages        = {743--767},
  year         = {2012}
}
@article{DBLP:journals/ploscb/WijkMVTB12,
  author       = {Sjoerd J. L. van Wijk and
                  Adrien S. J. Melquiond and
                  Sjoerd Jacob de Vries and
                  H. Th. Marc Timmers and
                  Alexandre M. J. J. Bonvin},
  title        = {Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed
                  by an {ASP} to {GLU} Substitution in an Intra-Molecular Salt-Bridge
                  Network},
  journal      = {PLoS Comput. Biol.},
  volume       = {8},
  number       = {11},
  year         = {2012}
}
@article{DBLP:journals/displays/EmmerikVB11,
  author       = {Martijn L. van Emmerik and
                  Sjoerd C. de Vries and
                  Jelte E. Bos},
  title        = {Internal and external fields of view affect cybersickness},
  journal      = {Displays},
  volume       = {32},
  number       = {4},
  pages        = {169--174},
  year         = {2011}
}
@inproceedings{DBLP:conf/iwsg/WassenaarDLSVSZBGFRBHJBJGSVDVVFKSFILSVBPMFB11,
  author       = {Tsjerk A. Wassenaar and
                  Marc van Dijk and
                  Nuno Loureiro{-}Ferreira and
                  Gijs van der Schot and
                  Sjoerd Jacob de Vries and
                  Christophe Schmitz and
                  Johan van der Zwan and
                  Rolf Boelens and
                  Andrea Giachetti and
                  Lucio Ferella and
                  Antonio Rosato and
                  Ivano Bertini and
                  Torsten Herrmann and
                  Hendrik R. A. Jonker and
                  Anurag Bagaria and
                  Victor Jaravine and
                  Peter G{\"{u}}ntert and
                  Harald Schwalbe and
                  Wim F. Vranken and
                  Jurgen F. Doreleijers and
                  Gert Vriend and
                  Geerten W. Vuister and
                  Daniel Franke and
                  Alexey Kikhney and
                  Dmitri I. Svergun and
                  Rasmus H. Fogh and
                  John M. C. Ionides and
                  Ernest D. Laue and
                  Chris A. E. M. Spronk and
                  Marco Verlato and
                  Simone Badoer and
                  Stefano Dal Pra and
                  Mirco Mazzucato and
                  Eric Frizziero and
                  Alexandre M. J. J. Bonvin},
  title        = {WeNMR: Structural Biology on the Grid},
  booktitle    = {IWSG-Life},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {819},
  publisher    = {CEUR-WS.org},
  year         = {2011}
}
@article{DBLP:journals/giq/JansenVS10,
  author       = {Jurjen Jansen and
                  Sjoerd de Vries and
                  Paul van Schaik},
  title        = {The Contextual Benchmark Method: Benchmarking e-Government services},
  journal      = {Gov. Inf. Q.},
  volume       = {27},
  number       = {3},
  pages        = {213--219},
  year         = {2010}
}
@incollection{DBLP:books/others/10/VriesSS10,
  author       = {Sjoerd de Vries and
                  Paul van Schaik and
                  Dick Slettenhaar},
  title        = {Schooltrack: an {EPSS} for Action Research},
  booktitle    = {Electronic Performance Support},
  publisher    = {Gower Publ.},
  year         = {2010}
}
@article{DBLP:journals/toh/HogemaVEK09,
  author       = {Jeroen H. Hogema and
                  Sjoerd C. de Vries and
                  Jan B. F. van Erp and
                  Raymond J. Kiefer},
  title        = {A Tactile Seat for Direction Coding in Car Driving: Field Evaluation},
  journal      = {{IEEE} Trans. Haptics},
  volume       = {2},
  number       = {4},
  pages        = {181--188},
  year         = {2009}
}
@inproceedings{DBLP:conf/egov/JansenVGAD09,
  author       = {Jurjen Jansen and
                  Sjoerd de Vries and
                  Thea van der Geest and
                  Rex Arendsen and
                  Jan van Dijk},
  title        = {The State of Client-Centered Public Service Delivery in the Netherlands},
  booktitle    = {{EGOV}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5693},
  pages        = {293--304},
  publisher    = {Springer},
  year         = {2009}
}
@article{DBLP:journals/bioinformatics/VriesB06,
  author       = {Sjoerd Jacob de Vries and
                  Alexandre M. J. J. Bonvin},
  title        = {Intramolecular surface contacts contain information about protein-protein
                  interface regions},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {17},
  pages        = {2094--2098},
  year         = {2006}
}
@article{DBLP:journals/ijwbc/VriesK04,
  author       = {Sjoerd de Vries and
                  Piet Kommers},
  title        = {Online knowledge communities: future trends and research issues},
  journal      = {Int. J. Web Based Communities},
  volume       = {1},
  number       = {1},
  pages        = {115--123},
  year         = {2004}
}
@article{DBLP:journals/informaticaSI/Vries03,
  author       = {Sjoerd de Vries},
  title        = {Concourse: The Design of an Online Collaborated Writing Center},
  journal      = {Informatica (Slovenia)},
  volume       = {27},
  number       = {3},
  pages        = {255--262},
  year         = {2003}
}
@inproceedings{DBLP:conf/iadis/Vries02,
  author       = {Sjoerd de Vries},
  title        = {A Reference Model for the Development of Networked Organizational
                  Communication: {A} Communication Perspective},
  booktitle    = {{ICWI}},
  pages        = {799--804},
  publisher    = {{IADIS}},
  year         = {2002}
}
@inproceedings{DBLP:conf/ifip3-1/Vries02,
  author       = {Sjoerd de Vries},
  title        = {Online Knowledge Communities: Meeting Places for Continuing Professional
                  Development},
  booktitle    = {{SECIII}},
  series       = {{IFIP} Conference Proceedings},
  volume       = {244},
  pages        = {215--224},
  publisher    = {Kluwer},
  year         = {2002}
}
@inproceedings{DBLP:conf/webnet/VriesBR00,
  author       = {Sjoerd de Vries and
                  Paul Bloemen and
                  Lonneke Roossink},
  title        = {Online Knowledge Communities},
  booktitle    = {WebNet},
  pages        = {124--129},
  publisher    = {{AACE}},
  year         = {2000}
}
@inproceedings{DBLP:conf/webnet/VriesD96,
  author       = {Sjoerd de Vries and
                  Henk Donker},
  title        = {{HERODOTUS:} An Educational Site as an Integral Part of a Study Book},
  booktitle    = {WebNet},
  publisher    = {{AACE}},
  year         = {1996}
}