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@article{DBLP:journals/dagstuhl-reports/GundryMP23,
author = {Rebekah L. Gundry and
Lennart Martens and
Magnus Palmblad},
title = {Computational Proteomics (Dagstuhl Seminar 23301)},
journal = {Dagstuhl Reports},
volume = {13},
number = {7},
pages = {152--165},
year = {2023},
url = {https://doi.org/10.4230/DagRep.13.7.152},
doi = {10.4230/DAGREP.13.7.152},
timestamp = {Thu, 14 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/GundryMP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/BockerGMP21,
author = {Sebastian B{\"{o}}cker and
Rebekah L. Gundry and
Lennart Martens and
Magnus Palmblad},
title = {Computational Proteomics (Dagstuhl Seminar 21271)},
journal = {Dagstuhl Reports},
volume = {11},
number = {6},
pages = {1--13},
year = {2021},
url = {https://doi.org/10.4230/DagRep.11.6.1},
doi = {10.4230/DAGREP.11.6.1},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/BockerGMP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/HaseebAS19,
author = {Muhammad Haseeb and
Fatima Afzali and
Fahad Saeed},
title = {{LBE:} {A} Computational Load Balancing Algorithm for Speeding up
Parallel Peptide Search in Mass-Spectrometry Based Proteomics},
booktitle = {{IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPSW} 2019, Rio de Janeiro, Brazil, May 20-24, 2019},
pages = {191--198},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/IPDPSW.2019.00040},
doi = {10.1109/IPDPSW.2019.00040},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/HaseebAS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/Bilbao19,
author = {Aivett Bilbao},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Proteomics Mass Spectrometry Data Analysis Tools},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
2},
pages = {84--95},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20274-4},
doi = {10.1016/B978-0-12-809633-8.20274-4},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/Bilbao19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/PetalcorinSLP19,
author = {Marwenie F. Petalcorin and
Naeem Shafqat and
Zen H. Lu and
Mark I. R. Petalcorin},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Clinical Proteomics},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
3},
pages = {911--925},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20450-0},
doi = {10.1016/B978-0-12-809633-8.20450-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/bioinf/PetalcorinSLP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/Robin19,
author = {Thibault Robin},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Proteomics Data Representation and Databases},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
2},
pages = {76--83},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20273-2},
doi = {10.1016/B978-0-12-809633-8.20273-2},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/Robin19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/BandeiraM19,
author = {Nuno Bandeira and
Lennart Martens},
title = {Computational Proteomics (Dagstuhl Seminar 19351)},
journal = {Dagstuhl Reports},
volume = {9},
number = {8},
pages = {70--83},
year = {2019},
url = {https://doi.org/10.4230/DagRep.9.8.70},
doi = {10.4230/DAGREP.9.8.70},
timestamp = {Mon, 06 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/BandeiraM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/sp/ChaudhuriGDC18,
author = {Parimal Pal Chaudhuri and
Soumyabrata Ghosh and
Adip Dutta and
Somshubhro Pal Choudhury},
title = {A New Kind of Computational Biology - Cellular Automata Based Models
for Genomics and Proteomics},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-981-13-1639-5},
doi = {10.1007/978-981-13-1639-5},
isbn = {978-981-13-1638-8},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/ChaudhuriGDC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/be/Bittremieux17,
author = {Wout Bittremieux},
title = {Computational solutions for quality control of mass spectrometry-based
proteomics},
school = {University of Antwerp, Belgium},
year = {2017},
url = {https://hdl.handle.net/10067/1415590151162165141},
timestamp = {Mon, 18 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/be/Bittremieux17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiWYDMS17,
author = {Zhiwei Ji and
Bing Wang and
Ke Yan and
Ligang Dong and
Guanmin Meng and
Lei Shi},
title = {A linear programming computational framework integrates phosphor-proteomics
and prior knowledge to predict drug efficacy},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {127:1--127:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0501-6},
doi = {10.1186/S12918-017-0501-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiWYDMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/KusterLM17,
author = {Bernhard K{\"{u}}ster and
Kathryn S. Lilley and
Lennart Martens},
title = {Computational Proteomics (Dagstuhl Seminar 17421)},
journal = {Dagstuhl Reports},
volume = {7},
number = {10},
pages = {69--83},
year = {2017},
url = {https://doi.org/10.4230/DagRep.7.10.69},
doi = {10.4230/DAGREP.7.10.69},
timestamp = {Thu, 29 Mar 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/KusterLM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Informatica15k,
author = {Massimo Natale},
title = {Computational tools for the interactive exploration of proteomics
data and automatic bio-networks reconstruction},
school = {Polytechnic University of Turin, Italy},
year = {2015},
url = {http://hdl.handle.net/11583/2592757},
timestamp = {Wed, 03 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/basesearch/Informatica15k.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Perez-RiverolUS15,
author = {Yasset P{\'{e}}rez{-}Riverol and
Julian Uszkoreit and
Aniel S{\'{a}}nchez and
Tobias Ternent and
Noemi del{-}Toro and
Henning Hermjakob and
Juan Antonio Vizca{\'{\i}}no and
Rui Wang},
title = {ms-data-core-api: an open-source, metadata-oriented library for computational
proteomics},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2903--2905},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv250},
doi = {10.1093/BIOINFORMATICS/BTV250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Perez-RiverolUS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/de/Neuhauser14,
author = {Nadin Neuhauser},
title = {Computational approaches to enhance mass spectrometry-based proteomics
(Neue Softwareentwicklungen f{\"{u}}r die massenspektrometrie-basierte
Proteomforschung)},
school = {Technical University of Munich, Germany},
year = {2014},
url = {https://mediatum.ub.tum.de/1136349},
urn = {urn:nbn:de:bvb:91-diss-20130503-1136349-0-1},
timestamp = {Fri, 20 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/de/Neuhauser14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Marx14,
author = {Harald Marx},
title = {Computational Proteomics},
school = {Technical University Munich},
year = {2014},
url = {https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20140611-1206664-0-4},
urn = {urn:nbn:de:bvb:91-diss-20140611-1206664-0-4},
timestamp = {Sat, 17 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/dnb/Marx14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jaciii/MamunS14,
author = {Kabir A. Mamun and
Alok Sharma},
title = {Importance of Computational Intelligent in Proteomics},
journal = {J. Adv. Comput. Intell. Intell. Informatics},
volume = {18},
number = {4},
pages = {469--473},
year = {2014},
url = {https://doi.org/10.20965/jaciii.2014.p0469},
doi = {10.20965/JACIII.2014.P0469},
timestamp = {Fri, 24 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jaciii/MamunS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/de/Tyanova13,
author = {Stefka Tyanova},
title = {Computational Methods and Tools for Functional Analysis and Mining
of High-throughput Proteomics Data (Bioinformatische Verfahren zur
funktionalen Datenanalyse und Mining von High-throughput Proteomikdaten)},
school = {Technical University of Munich, Germany},
year = {2013},
url = {https://mediatum.ub.tum.de/1145078},
urn = {urn:nbn:de:bvb:91-diss-20130819-1145078-0-3},
timestamp = {Fri, 20 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/de/Tyanova13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ethos/Goh13,
author = {Wen Goh},
title = {Computational proteomics using network-based strategies},
school = {Imperial College London, {UK}},
year = {2013},
url = {https://hdl.handle.net/10044/1/24107},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/ethos/Goh13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigact/Papamichail13a,
author = {Dimitris Papamichail},
title = {Review of introduction to computational proteomics by Golan Yona},
journal = {{SIGACT} News},
volume = {44},
number = {4},
pages = {38--41},
year = {2013},
url = {https://doi.org/10.1145/2556663.2556671},
doi = {10.1145/2556663.2556671},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigact/Papamichail13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiR12,
author = {Yong Fuga Li and
Predrag Radivojac},
title = {Computational approaches to protein inference in shotgun proteomics},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-16}},
pages = {S4},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S16-S4},
doi = {10.1186/1471-2105-13-S16-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarsnesVCHSBM11,
author = {Harald Barsnes and
Marc Vaudel and
Niklaas Colaert and
Kenny Helsens and
Albert Sickmann and
Frode S. Berven and
Lennart Martens},
title = {compomics-utilities: an open-source Java library for computational
proteomics},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {70},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-70},
doi = {10.1186/1471-2105-12-70},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BarsnesVCHSBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KallV11,
author = {Lukas K{\"{a}}ll and
Olga Vitek},
title = {Computational Mass Spectrometry-Based Proteomics},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {12},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002277},
doi = {10.1371/JOURNAL.PCBI.1002277},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KallV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bicob/BartonH10,
author = {Alan J. Barton and
Arsalan S. Haqqani},
editor = {Hisham Al{-}Mubaid},
title = {Nonlinear Retention Time Shifts in nanoLC-MS Data: {A} Fuzzy-Evolutionary
Computational Proteomics Approach},
booktitle = {Proceedings of the {ISCA} 2nd International Conference on Bioinformatics
and Computational Biology, BICoB-2010, March 24-26, 2010, Sheraton
Waikiki Hotel, Honolulu, Hawaii, {USA}},
pages = {139--144},
publisher = {{ISCA}},
year = {2010},
timestamp = {Sat, 12 Jun 2010 17:38:08 +0200},
biburl = {https://dblp.org/rec/conf/bicob/BartonH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/Barton10,
author = {Alan J. Barton},
title = {Searching for a single mathematical function to address the nonlinear
retention time shifts problem in nanoLC-MS data: {A} fuzzy-evolutionary
computational proteomics approach},
booktitle = {Proceedings of the 2010 {IEEE} Symposium on Computational Intelligence
in Bioinformatics and Computational Biology, {CIBCB} 2010, Montreal,
QC, Canada, May 2-5, 2010},
pages = {1--8},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/CIBCB.2010.5510688},
doi = {10.1109/CIBCB.2010.5510688},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/Barton10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/Verkhivker09,
author = {Gennady Verkhivker},
title = {Computational proteomics analysis of binding mechanisms and molecular
signatures of the {HIV-1} protease drugs},
journal = {Artif. Intell. Medicine},
volume = {45},
number = {2-3},
pages = {197--206},
year = {2009},
url = {https://doi.org/10.1016/j.artmed.2008.08.011},
doi = {10.1016/J.ARTMED.2008.08.011},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/artmed/Verkhivker09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/Ma09,
author = {Bin Ma},
title = {Challenges in Computational Analysis of Mass Spectrometry Data for
Proteomics},
journal = {J. Comput. Sci. Technol.},
volume = {25},
number = {1},
pages = {107--123},
year = {2009},
url = {https://doi.org/10.1007/s11390-010-9309-1},
doi = {10.1007/S11390-010-9309-1},
timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcst/Ma09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Vitek09,
author = {Olga Vitek},
title = {Getting Started in Computational Mass Spectrometry-Based Proteomics},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {5},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000366},
doi = {10.1371/JOURNAL.PCBI.1000366},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Vitek09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JeongC09,
author = {Jieun Jeong and
Jake Y. Chen},
title = {{RIC:} Ranking with Interaction Chains and Its Application in Computational
Clinical Proteomics Studies},
booktitle = {2009 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2009, Washington, DC, USA, November 1-4, 2009, Proceedings},
pages = {216--221},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/BIBM.2009.58},
doi = {10.1109/BIBM.2009.58},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JeongC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Cannataro08,
author = {Mario Cannataro},
title = {Computational proteomics: management and analysis of proteomics data},
journal = {Briefings Bioinform.},
volume = {9},
number = {2},
pages = {97--101},
year = {2008},
url = {https://doi.org/10.1093/bib/bbn011},
doi = {10.1093/BIB/BBN011},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Cannataro08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrusniakBCCEGLLMSVZAW08,
author = {Mi{-}Youn K. Brusniak and
Bernd Bodenmiller and
David S. Campbell and
Kelly Cooke and
James Eddes and
Andrew Garbutt and
Hollis Lau and
Simon Letarte and
Lukas N. Mueller and
Vagisha Sharma and
Olga Vitek and
Ning Zhang and
Ruedi Aebersold and
Julian D. Watts},
title = {Corra: Computational framework and tools for {LC-MS} discovery and
targeted mass spectrometry-based proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-542},
doi = {10.1186/1471-2105-9-542},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BrusniakBCCEGLLMSVZAW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NiuMDAL08,
author = {Xinnan Niu and
K. Jill McAfee and
Dexter T. Duncan and
Michael Assink and
Andrew J. Link},
title = {A computational and analysis tool for proteomics research},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-7}},
year = {2008},
url = {http://www.biomedcentral.com/1471-2105/9/S7/P22},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NiuMDAL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/sci/SchleifVHWDT08,
author = {Frank{-}Michael Schleif and
Thomas Villmann and
Barbara Hammer and
Martijn van der Werff and
Andr{\'{e}} M. Deelder and
Rob A. E. M. Tollenaar},
editor = {Tomasz G. Smolinski and
Mariofanna G. Milanova and
Aboul Ella Hassanien},
title = {Analysis of Spectral Data in Clinical Proteomics by Use of Learning
Vector Quantizers},
booktitle = {Computational Intelligence in Biomedicine and Bioinformatics, Current
Trends and Applications},
series = {Studies in Computational Intelligence},
volume = {151},
pages = {141--167},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-70778-3\_6},
doi = {10.1007/978-3-540-70778-3\_6},
timestamp = {Fri, 27 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/sci/SchleifVHWDT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2008P8101,
editor = {Christian G. Huber and
Oliver Kohlbacher and
Michal Linial and
Kathrin Marcus and
Knut Reinert},
title = {Computational Proteomics, 02.03. - 07.03.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08101},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/portals/08101/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2008P8101.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/BockerR08,
author = {Sebastian B{\"{o}}cker and
Florian Rasche},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Michal Linial and
Kathrin Marcus and
Knut Reinert},
title = {Towards de novo identification of metabolites by analyzing tandem
mass spectra},
booktitle = {Computational Proteomics, 02.03. - 07.03.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08101},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1783/},
timestamp = {Thu, 10 Jun 2021 13:02:06 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/BockerR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/ReinertHMLK08,
author = {Knut Reinert and
Christian G. Huber and
Kathrin Marcus and
Michal Linial and
Oliver Kohlbacher},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Michal Linial and
Kathrin Marcus and
Knut Reinert},
title = {08101 Abstracts Collection - Computational Proteomics},
booktitle = {Computational Proteomics, 02.03. - 07.03.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08101},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1784/},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/ReinertHMLK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0018510,
author = {Xuhua Xia},
title = {Bioinformatics and the cell - modern computational approaches in genomics,
proteomics and transcriptomics},
publisher = {Springer},
year = {2007},
url = {http://www.springerlink.com/content/978-0-387-71336-6},
isbn = {978-0-387-71336-6},
timestamp = {Tue, 25 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/daglib/0018510.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/de/Taubig07,
author = {Hanjo T{\"{a}}ubig},
title = {Fast Structure Searching for Computational Proteomics (Schnelle Struktursuche
f{\"{u}}r computer-basierte Proteomforschung)},
school = {Technical University of Munich, Germany},
year = {2007},
url = {https://mediatum.ub.tum.de/626680},
urn = {urn:nbn:de:bvb:91-diss-20070828-626680-1-6},
timestamp = {Fri, 20 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/de/Taubig07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Webb-RobertsonC07,
author = {Bobbie{-}Jo M. Webb{-}Robertson and
William R. Cannon},
title = {Current trends in computational inference from mass spectrometry-based
proteomics},
journal = {Briefings Bioinform.},
volume = {8},
number = {5},
pages = {304--317},
year = {2007},
url = {https://doi.org/10.1093/bib/bbm023},
doi = {10.1093/BIB/BBM023},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Webb-RobertsonC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PfeiferLHK07,
author = {Nico Pfeifer and
Andreas Leinenbach and
Christian G. Huber and
Oliver Kohlbacher},
title = {Statistical learning of peptide retention behavior in chromatographic
separations: a new kernel-based approach for computational proteomics},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-468},
doi = {10.1186/1471-2105-8-468},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PfeiferLHK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ColingeB07,
author = {Jacques Colinge and
Keiryn L. Bennett},
title = {Introduction to Computational Proteomics},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {7},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030114},
doi = {10.1371/JOURNAL.PCBI.0030114},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ColingeB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispa/CannataroV07,
author = {Mario Cannataro and
Pierangelo Veltri},
editor = {Parimala Thulasiraman and
Xubin He and
Tony Li Xu and
Mieso K. Denko and
Ruppa K. Thulasiram and
Laurence Tianruo Yang},
title = {Services, Standards, and Technologies for High Performance Computational
Proteomics},
booktitle = {Frontiers of High Performance Computing and Networking {ISPA} 2007
Workshops, {ISPA} 2007 International Workshops SSDSN, UPWN, WISH,
SGC, ParDMCom, HiPCoMB, and {IST-AWSN} Niagara Falls, Canada, August
28 - September 1, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4743},
pages = {404--413},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74767-3\_42},
doi = {10.1007/978-3-540-74767-3\_42},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ispa/CannataroV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wilf/Verkhivker07,
author = {Gennady Verkhivker},
editor = {Francesco Masulli and
Sushmita Mitra and
Gabriella Pasi},
title = {Computational Proteomics of Biomolecular Interactions in Sequence
and Structure Space of the Tyrosine Kinome: Evolutionary Constraints
and Protein Conformational Selection Determine Binding Signatures
of Cancer Drugs},
booktitle = {Applications of Fuzzy Sets Theory, 7th International Workshop on Fuzzy
Logic and Applications, {WILF} 2007, Camogli, Italy, July 7-10, 2007,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4578},
pages = {604--611},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73400-0\_77},
doi = {10.1007/978-3-540-73400-0\_77},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/wilf/Verkhivker07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2006sbcp,
editor = {Trey Ideker and
Vineet Bafna},
title = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73060-6},
doi = {10.1007/978-3-540-73060-6},
isbn = {978-3-540-73059-0},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2006sbcp.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FasuloEWNE06,
author = {Daniel P. Fasulo and
Anne{-}Katrin Emde and
Lu{-}Yong Wang and
Karin Noy and
Nathan Edwards},
editor = {Trey Ideker and
Vineet Bafna},
title = {Alignment of Mass Spectrometry Data by Clique Finding and Optimization},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {119--129},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_9},
doi = {10.1007/978-3-540-73060-6\_9},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FasuloEWNE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HormozdiariBPS06,
author = {Fereydoun Hormozdiari and
Petra Berenbrink and
Natasa Przulj and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Trey Ideker and
Vineet Bafna},
title = {Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph
in {PPI} Network Emulation},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {1--13},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_1},
doi = {10.1007/978-3-540-73060-6\_1},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HormozdiariBPS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangZRB06,
author = {Hailiang Huang and
Lan V. Zhang and
Frederick P. Roth and
Joel S. Bader},
editor = {Trey Ideker and
Vineet Bafna},
title = {Probabilistic Paths for Protein Complex Inference},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {14--28},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_2},
doi = {10.1007/978-3-540-73060-6\_2},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangZRB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaltenbachBR06,
author = {Hans{-}Michael Kaltenbach and
Sebastian B{\"{o}}cker and
Sven Rahmann},
editor = {Trey Ideker and
Vineet Bafna},
title = {Markov Additive Chains and Applications to Fragment Statistics for
Peptide Mass Fingerprinting},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {29--41},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_3},
doi = {10.1007/978-3-540-73060-6\_3},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KaltenbachBR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LefebvreLBFC06,
author = {C{\'{e}}line Lefebvre and
Wei Keat Lim and
Katia Basso and
Riccardo Dalla Favera and
Andrea Califano},
editor = {Trey Ideker and
Vineet Bafna},
title = {A Context-Specific Network of Protein-DNA and Protein-Protein Interactions
Reveals New Regulatory Motifs in Human {B} Cells},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {42--56},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_4},
doi = {10.1007/978-3-540-73060-6\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LefebvreLBFC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RuanZ06,
author = {Jianhua Ruan and
Weixiong Zhang},
editor = {Trey Ideker and
Vineet Bafna},
title = {Identification and Evaluation of Functional Modules in Gene Co-expression
Networks},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {57--76},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_5},
doi = {10.1007/978-3-540-73060-6\_5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RuanZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RuthsTNR06,
author = {Derek A. Ruths and
Jen{-}Te Tseng and
Luay Nakhleh and
Prahlad T. Ram},
editor = {Trey Ideker and
Vineet Bafna},
title = {De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction,
Targeted Therapy and Protein Microarray Analysis},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {108--118},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_8},
doi = {10.1007/978-3-540-73060-6\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RuthsTNR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongL06,
author = {Mingzhou (Joe) Song and
Z. Lewis Liu},
editor = {Trey Ideker and
Vineet Bafna},
title = {A Linear Discrete Dynamic System Model for Temporal Gene Interaction
and Regulatory Network Influence in Response to Bioethanol Conversion
Inhibitor {HMF} for Ethanologenic Yeast},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {77--95},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_6},
doi = {10.1007/978-3-540-73060-6\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SongL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuMKNT06,
author = {Yin Wu and
Yehia Mechref and
Iveta Klouckova and
Milos V. Novotny and
Haixu Tang},
editor = {Trey Ideker and
Vineet Bafna},
title = {A Computational Approach for the Identification of Site-Specific Protein
Glycosylations Through Ion-Trap Mass Spectrometry},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {96--107},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_7},
doi = {10.1007/978-3-540-73060-6\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuMKNT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/ChenPSW06,
author = {Jake Yue Chen and
Sarah L. Pinkerton and
Changyu Shen and
Mu Wang},
editor = {Hisham Haddad},
title = {An integrated computational proteomics method to extract protein targets
for Fanconi Anemia studies},
booktitle = {Proceedings of the 2006 {ACM} Symposium on Applied Computing (SAC),
Dijon, France, April 23-27, 2006},
pages = {173--179},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1141277.1141316},
doi = {10.1145/1141277.1141316},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sac/ChenPSW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2005P5471,
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2006},
url = {http://drops.dagstuhl.de/portals/05471/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2005P5471.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sma/Donald05,
author = {Bruce Randall Donald},
editor = {Leif Kobbelt and
Vadim Shapiro},
title = {Computational and physical modeling challenges in structural molecular
biology and proteomics},
booktitle = {Proceedings of the Tenth {ACM} Symposium on Solid and Physical Modeling
2005, Cambridge, Massachusetts, USA, June 13-15, 2005},
pages = {7},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1060244.1060245},
doi = {10.1145/1060244.1060245},
timestamp = {Wed, 26 Jun 2019 19:43:44 +0200},
biburl = {https://dblp.org/rec/conf/sma/Donald05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/BockerM05,
author = {Sebastian B{\"{o}}cker and
Veli M{\"{a}}kinen},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Combinatorial Approaches for Mass Spectra Recalibration},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/545},
timestamp = {Thu, 10 Jun 2021 13:02:10 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/BockerM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Conrad05,
author = {Tim Conrad},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {New statistical algorithms for clinical proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/542},
timestamp = {Thu, 08 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Conrad05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/DelmotteMLRKKH05,
author = {Nathana{\"{e}}l Delmotte and
Bettina M. Mayr and
Andreas Leinenbach and
Knut Reinert and
Oliver Kohlbacher and
Christoph L. Klein and
Christian G. Huber},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Evaluation of {LC-MS} data for the absolute quantitative analysis
of marker proteins},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/539},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/DelmotteMLRKKH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Gropl05,
author = {Clemens Gr{\"{o}}pl},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {An Algorithm for Feature Finding in {LC/MS} Raw Data},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/534},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Gropl05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/HuberKR05,
author = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {05471 Executive Summary - Computational Proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/540},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/HuberKR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/HuberKR05a,
author = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {05471 Abstract Collection - Computational Proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/556},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/HuberKR05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/LangeGKH05,
author = {Eva Lange and
Clemens Gr{\"{o}}pl and
Oliver Kohlbacher and
Andreas Hildebrandt},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {High-accuracy peak picking of proteomics data},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/535},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/LangeGKH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/LehmannWRS05,
author = {Wolf D. Lehmann and
Junhua Wei and
Juri Rappsilber and
Mojiborahman Salek},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {The Peptide MS/MS-Fragmentome: {A} Set of Predictable Fragment Ions
with Highly Redundant Sequence Information},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/547},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/LehmannWRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/SchleyAMH05,
author = {Christian Schley and
Matthias Altmeyer and
Rolf M{\"{u}}ller and
Christian G. Huber},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Multidimensional Peptide/Protein Analysis and Identification by Sequence
Database Search Using Mass Spectrometric Data},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/538},
timestamp = {Wed, 27 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dagstuhl/SchleyAMH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Schluter05,
author = {Hartmut Schl{\"{u}}ter},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Future Challenges in Proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/544},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Schluter05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Schulz-Trieglaff05,
author = {Ole Schulz{-}Trieglaff},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Software platforms for quantitative proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/537},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Schulz-Trieglaff05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/SturmQHK05,
author = {Marc Sturm and
Sascha Quinten and
Christian G. Huber and
Oliver Kohlbacher},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {A machine learning approach for prediction of {DNA} and peptide retention
times},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/548},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/SturmQHK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Tholey05,
author = {Andreas Tholey},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {{MALDI} Mass Spectrometry for Quantitative Proteomics - Approaches,
Scopes and Limitations},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/536},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Tholey05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/TollBHHOLH05,
author = {Hansj{\"{o}}rg Toll and
Peter Berger and
Andreas Hofmann and
Andreas Hildebrandt and
Herbert Oberacher and
Hans{-}Peter Lenhof and
Christian G. Huber},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass
Spectrometry and Bioinformatic Tools},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/543},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/TollBHHOLH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangC04,
author = {Zheng Rong Yang and
Kuo{-}Chen Chou},
title = {Bio-support vector machines for computational proteomics},
journal = {Bioinform.},
volume = {20},
number = {5},
pages = {735--741},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/btg477},
doi = {10.1093/BIOINFORMATICS/BTG477},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuZ04,
author = {Yin Liu and
Hongyu Zhao},
title = {A computational approach for ordering signal transduction pathway
components from genomics and proteomics Data},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {158},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-158},
doi = {10.1186/1471-2105-5-158},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ngc/HuedoBML04,
author = {Eduardo Huedo and
Ugo Bastolla and
Rub{\'{e}}n S. Montero and
Ignacio Mart{\'{\i}}n Llorente},
title = {Computational Proteomics on the Grid},
journal = {New Gener. Comput.},
volume = {22},
number = {2},
pages = {191--192},
year = {2004},
url = {https://doi.org/10.1007/BF03040959},
doi = {10.1007/BF03040959},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ngc/HuedoBML04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ai/Baldi03,
author = {Pierre Baldi},
editor = {Yang Xiang and
Brahim Chaib{-}draa},
title = {Machine Learning Methods for Computational Proteomics and Beyond},
booktitle = {Advances in Artificial Intelligence, 16th Conference of the Canadian
Society for Computational Studies of Intelligence, {AI} 2003, Halifax,
Canada, June 11-13, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2671},
pages = {8},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-44886-1\_3},
doi = {10.1007/3-540-44886-1\_3},
timestamp = {Thu, 28 Sep 2023 12:27:05 +0200},
biburl = {https://dblp.org/rec/conf/ai/Baldi03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/Gerstein03,
author = {Mark Gerstein},
title = {Computational Proteomics: Genome-scale Analysis of Protein Structure,
Function, {\&} Evolution(Invited Talk)},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2003,
October 12-14, 2003, Neuherberg/Garching near Munich, Germany},
pages = {53},
year = {2003},
timestamp = {Tue, 15 Mar 2005 13:11:15 +0100},
biburl = {https://dblp.org/rec/conf/gcb/Gerstein03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ws/Wang03/Wu03,
author = {Cathy H. Wu},
editor = {Jason Tsong{-}Li Wang and
Cathy H. Wu and
Paul P. Wang},
title = {The Protein Information Resource for Functional Genomics and Proteomics},
booktitle = {Computational Biology and Genome Informatics},
pages = {117--137},
publisher = {World Scientific},
year = {2003},
timestamp = {Sat, 03 Aug 2019 22:52:51 +0200},
biburl = {https://dblp.org/rec/books/ws/Wang03/Wu03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Abagyan02,
author = {Ruben Abagyan},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Computational structural proteomics and virtual ligand screening},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {1},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565197},
doi = {10.1145/565196.565197},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Abagyan02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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